BAC Information

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BAC

Clone NameB6Ng01-135B11
Chromosome2 (Build37)
Map Location 172,614,503 - 172,760,295
singlet/doubletdoublet
Overlap geneBmp7
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B11.bB6Ng01-135B11.g
ACCDH935220DH935221
length1,023608
definitionDH935220|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B11, 5' end.DH935221|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,759,276 - 172,760,295)(172,614,503 - 172,615,110)
sequence
gaattcaccaattcaccccctagaacattttagccaaaccattcaggggc
tccaccgccagcgtgtggggttctttgtgcggggggggggtcagcttggg
gcacttgctttatttattccagaactctctttcctagtccctgcaagtgt
ttatagaggcaggatggcttgcactgtaagctcgcttgctctcatgcacc
accatggctattatgtgagccggttggtattagctgtgtgctcagctggg
attgaattccccgggttttgcagcaaatggcatttgacaaacactatttg
acaaaaaatgtgacttggtatttcttaatgtggaacagatatttcacggt
taacctcccccgggtgaaaaaaatcgctcgacccccaagtgcaatggcgg
agcagatgaacaccagggctgggctgggaaatgccccccccctttccagg
atgggctgtttatgatttgggggatgtcaggagtgcacagagcccgacac
gccccgttgtgaagctcgagtagcgtgtgccaggctggcctttcaacatt
tgtgtcggaaggcatcgcggggagcggcgcaaagcctctgctgatcctct
aggagtggatcgaattaatgaggcctctgcgaacaccagggtttgagaaa
ctactttatcgtttgagaaccagagtgcttataatctggttcctgtacca
acatgtttaacgtgtgttaatgcatttccaaaccggagccgctcagcaca
gttctgcttttcattaattgatgtcggtagcatggtacagtatttcaaag
ggccggccaagcataaactgtgttttccaatttccttcctttcctgtgtt
tgggatgccattgttaatttgttcccatgcaggagccggggctgccaacc
ggctttctataaagggcttcacagtgaagctttcaagccctcacttggtg
ctcgggccgcctgggccagtttcctgacactttgcagttaattctggatg
atctattggggtgggggggtggg
gaattctctgcaaagtcacacagcaatgccaagtgtctcctagcatgcag
gaagccctgcatcctgtccccagcaccatagaaacagcacccagcactgc
accgctgaaaccccagcactcaggaggttgaggcagcaggatccgctcag
ggtcgtcttccctgcctatagagttggaggaagcccataaagctgcccca
agcccgcgcttagggtcctcaagtcaagctccctcccatcttgcctgggt
gcagtgagcattggaaatccaggcacaggtgtaattacggactcacactt
ccaagagccaacttgcccacgctggcaacggccttttaagacggctgtca
ctcagcatccgcaaggctaatgacggggtagggaacatgaaagtggaggg
gagcgggtggggtggtcagcggctgcccgccccttccttttaagtgctca
ttatgaaatatttatctgattgacagccctggcagccccaccctaagccc
ctttcatgttgcatggctctgtgcccctccgcccagccagggcctcacag
ccaggggctgctcctggctccctgccctccctgatgaggagcaggggaga
ggggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172759276_172760295
seq2: B6Ng01-135B11.b_47_1069 (reverse)

seq1  CCCAACCCCCCACCCC-ATAGATCATCCAGAATTAACTGCAAAGTGTCAG  49
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCCACCCCAATAGATCATCCAGAATTAACTGCAAAGTGTCAG  50

seq1  GAAACTGGGCCAGGCGGCCCGAGCA-CGAGTGAGGGCTGGAAGCCTTCAC  98
      |||||||| |||||||||||||||| | |||||||||| |||  ||||||
seq2  GAAACTGGCCCAGGCGGCCCGAGCACCAAGTGAGGGCTTGAAAGCTTCAC  100

seq1  TGTGAAGCCCTTTATAGAAAGCCGGTTGGCAGCCCCGGCTCCTGCATGGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCCCTTTATAGAAAGCCGGTTGGCAGCCCCGGCTCCTGCATGGG  150

seq1  AACAAATTAACAATGGCATCCCAAACACAGGAAAGGAAGGAAATTGG-AA  197
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACAAATTAACAATGGCATCCCAAACACAGGAAAGGAAGGAAATTGGAAA  200

seq1  ACACAGTTTATGCTTGGCCGGCCCTTTGAAATACTGTACCATGCTACCGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTATGCTTGGCCGGCCCTTTGAAATACTGTACCATGCTACCGA  250

seq1  CATCAATTAATGAAAAGCAGAACTGTGCTGAGCGGCTCCGGTTTGGAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTAATGAAAAGCAGAACTGTGCTGAGCGGCTCCGGTTTGGAAAT  300

seq1  GCATTAACACACGTTAAACATGTTGGTACAGGAACCAGATTATAAGCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACACACGTTAAACATGTTGGTACAGGAACCAGATTATAAGCACT  350

seq1  CTGGTTCTCAAACGATAAAGTAGTTTCTCAAACCCTGGTGTTCGCAGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTCAAACGATAAAGTAGTTTCTCAAACCCTGGTGTTCGCAGAGG  400

seq1  CCTCATTAATTCGATCCACTCCTAGAGGATCAGCAGAGGCTTTGCGCCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTAATTCGATCCACTCCTAGAGGATCAGCAGAGGCTTTGCGCCGC  450

seq1  TCCCCGCGATGCCTTCCGACACAAATGTTGAAAGGCCAGCCTGGCACACG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCGATGCCTTCCGACACAAATGTTGAAAGGCCAGCCTGGCACACG  500

seq1  CTACTCGAGCTTCACAACGGGGCGTGTCGGGCTCTGTGCACTCCTGACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCGAGCTTCACAACGGGGCGTGTCGGGCTCTGTGCACTCCTGACAT  550

seq1  CCCCCAAATCATAAACAGCCCATCCTGGAAAGGGGGGGGGCATTTCCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATCATAAACAGCCCATCCTGGAAAGGGGGGGGGCATTTCCCAG  600

seq1  CCCAGCCCTGGTGTTCATCTGCTCCGCCATTGCACTTGGGGGTCGAGCGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTGGTGTTCATCTGCTCCGCCATTGCACTTGGGGGTCGAGCGA  650

seq1  TTTTTTTCACCCGGGGGAGGTTAACCGTGAAATATCTGTTCCACATTAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACCCGGGGGAGGTTAACCGTGAAATATCTGTTCCACATTAAG  700

seq1  AAATACCAAGTCACATTTTTTGTCAAATAGTGTTTGTCAAATGCCATTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAGTCACATTTTTTGTCAAATAGTGTTTGTCAAATGCCATTTG  750

seq1  CTGCAAAACCCGGGGAATTCAATCCCAGCTGAGCACACAGCTAATACCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAACCCGGGGAATTCAATCCCAGCTGAGCACACAGCTAATACCAA  800

seq1  CCGGCTCACATAATAGCCATGGTGGTGCATGAGAGCAAGCGAGCTTACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCACATAATAGCCATGGTGGTGCATGAGAGCAAGCGAGCTTACAG  850

seq1  TGCAAGCCATCCTGCCTCTATAAACACTTGCAGGGACTAGGAAAGAGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCATCCTGCCTCTATAAACACTTGCAGGGACTAGGAAAGAGAGT  900

seq1  TCTGGAATAAATAAAGCAAGTGCCCCAAGCTGACCCCCCCCCCGCACAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATAAATAAAGCAAGTGCCCCAAGCTGACCCCCCCCCCGCACAAA  950

seq1  GAACCCCACACGCTGGCGGTGGAGCCCCTGAATGGTTTGGCAAGAATGTT  997
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  GAACCCCACACGCTGGCGGTGGAGCCCCTGAATGGTTTGGCTAAAATGTT  1000

seq1  CTAGGGGGTGAATTGGTGAATTC  1020
      |||||||||||||||||||||||
seq2  CTAGGGGGTGAATTGGTGAATTC  1023

seq1: chr2_172614503_172615110
seq2: B6Ng01-135B11.g_71_678

seq1  GAATTCTCTGCAAAGTCACACAGCAATGCCAAGTGTCTCCTAGCATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAAAGTCACACAGCAATGCCAAGTGTCTCCTAGCATGCAG  50

seq1  GAAGCCCTGCATCCTGTCCCCAGCACCATAGAAACAGCACCCAGCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGCATCCTGTCCCCAGCACCATAGAAACAGCACCCAGCACTGC  100

seq1  ACCGCTGAAACCCCAGCACTCAGGAGGTTGAGGCAGCAGGATCCGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGAAACCCCAGCACTCAGGAGGTTGAGGCAGCAGGATCCGCTCAG  150

seq1  GGTCGTCTTCCCTGCCTATAGAGTTGGAGGAAGCCCATAAAGCTGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTCTTCCCTGCCTATAGAGTTGGAGGAAGCCCATAAAGCTGCCCCA  200

seq1  AGCCCGCGCTTAGGGTCCTCAAGTCAAGCTCCCTCCCATCTTGCCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGCGCTTAGGGTCCTCAAGTCAAGCTCCCTCCCATCTTGCCTGGGT  250

seq1  GCAGTGAGCATTGGAAATCCAGGCACAGGTGTAATTACGGACTCACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGCATTGGAAATCCAGGCACAGGTGTAATTACGGACTCACACTT  300

seq1  CCAAGAGCCAACTTGCCCACGCTGGCAACGGCCTTTTAAGACGGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCCAACTTGCCCACGCTGGCAACGGCCTTTTAAGACGGCTGTCA  350

seq1  CTCAGCATCCGCAAGGCTAATGACGGGGTAGGGAACATGAAAGTGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATCCGCAAGGCTAATGACGGGGTAGGGAACATGAAAGTGGAGGG  400

seq1  GAGCGGGTGGGGTGGTCAGCGGCTGCCCGCCCCTTCCTTTTAAGTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGTGGGGTGGTCAGCGGCTGCCCGCCCCTTCCTTTTAAGTGCTCA  450

seq1  TTATGAAATATTTATCTGATTGACAGCCCTGGCAGCCCCACCCTAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATATTTATCTGATTGACAGCCCTGGCAGCCCCACCCTAAGCCC  500

seq1  CTTTCATGTTGCATGGCTCTGTGCCCCTCCGCCCAGCCAGGGCCTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTTGCATGGCTCTGTGCCCCTCCGCCCAGCCAGGGCCTCACAG  550

seq1  CCAGGGGCTGCTCCTGGCTCCCTGCCCTCCCTGATGAGGAGCAGGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCTGCTCCTGGCTCCCTGCCCTCCCTGATGAGGAGCAGGGGAGA  600

seq1  GGGGTGGA  608
      ||||||||
seq2  GGGGTGGA  608