BAC Information

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BAC

Clone NameB6Ng01-135C04
Chromosome2 (Build37)
Map Location 120,480,199 - 120,481,376
singlet/doubletsinglet
Overlap geneStard9
Upstream geneNdufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
Downstream geneCdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C04.bB6Ng01-135C04.g
ACCDH935252DH935253
length1,170747
definitionDH935252|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C04, 5' end.DH935253|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtccccaagaccctcatggtagaagaagagaaccaacttctgc
aatgtgccctctgacctctgacaggtacacctacaggaaggatggattga
tggatagataggtagacagagagatagacagaaaagttgtagggctgagc
ctgccatttggagtgacagacagacagacaggtgagctgtagagctgagg
ctatttagagtcatctgtgtctgaatcctgggcttgtttttacagtgaca
catagcctttttatttaaacgtgggcccataattttttcagtggtttctg
tgctagcagaccctgctactgggaaagcagttttctagaaatattgccag
gtggaatgaaggagtgggaggcccagccaggaagggagctgagcaagtgt
cactcagggttggggtcagagcagtcttaacaagctaggctccaccaggt
gtcctcagtaggtcagttagagaataaccatgtaatggtgagaagcagaa
aggggagattgagtcaatgtggccacattgggaagaggaacaaggaggtc
caatgatcccccacctccaaaatgaccttgcggatcctgacctgaggttc
aggtttacatagaagggcaagtcagacttaaatagcaaatccggggtagt
cagatgtggtcccctccaccgcattgtctaagctcttttctctcttagaa
ggtgacctaacaacctgtatgaaccaggcttcagccttttctttctccca
gattgggagttctcaaaaagttctaatttcttggagcctattgtctcagt
cagagagccaaaggtagccaccagaatctctttagaatatcttcatacct
acagggtagctagctacacaagggacacttagaaagtctaattctactag
gctgtattttatacacagtggattttccttgtcagtaattgtttccttta
gatttttctcactggactattgcttgaaattgccatatagaactctggct
gtaaacagagttcccataacctgagtacagcccttagacaggtgtaccac
ttttaagagtgaactactttactagtaagctgcattcttagaatagtgag
gatccaggttgtggtgtggctagggcactgaatagatctgtctgcagcac
caaatcttgatactataaga
gaattcacaatggaggaatctcaaatggctgagaagcacttaaagaaatg
ttcaaagtccttagtgatcagggaagtgcaaatcagaacgaccctgagat
tccaccttacaccaactagaatgactaagatcaaaaactcagcacatgct
ggtgaggatgtagaagagagaggaacacttctctattgctgatggaattg
ctgatggtacaaccactctggaaatcaatccggtagttcctcagaaaatt
gaaaataatatctacctgaagtcccagctataccattcttgggcatatat
ccaaaagatgacccaccatgccacaggggcacgtgttctactatgttcat
aatggccttatttgtgatagccagaagctgttaacaacctagatgtccct
caaacaaagaatggatacagaaaatgtggttcatttacacaatggaacac
tattcagctattaagaatgaggacattatgagttttgcaggcaaatggat
ggaactagaaaatatcatcctgagtgaagccacctagacccaaaaggaca
tgcatggtatgtactcactaataagtggatattagccaaaaagtacagaa
tacctaggatacaatccacagaactcaagaaggataacaagcagaagggc
ccaagtggggatgcttcaatcccacttagaagggggaagaaaataatcat
ggaaggcagagagggagggacctgggtgggagaggggaggggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120480199_120481376
seq2: B6Ng01-135C04.b_45_1214

seq1  GAATTCAGTCCCCAAGACCCTCATGGTAGAAGAAGAGAACCAACTTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCCAAGACCCTCATGGTAGAAGAAGAGAACCAACTTCTGC  50

seq1  AATGTGCCCTCTGACCTCTGACAGGTACACCTACAGGAAGGATGGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCCTCTGACCTCTGACAGGTACACCTACAGGAAGGATGGATTGA  100

seq1  TGGATAGATAGGTAGACAGAGAGATAGACAGAAAAGTTGTAGGGCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGATAGGTAGACAGAGAGATAGACAGAAAAGTTGTAGGGCTGAGC  150

seq1  CTGCCATTTGGAGTGACAGACAGACAGACAGGTGAGCTGTAGAGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTGGAGTGACAGACAGACAGACAGGTGAGCTGTAGAGCTGAGG  200

seq1  CTATTTAGAGTCATCTGTGTCTGAATCCTGGGCTTGTTTTTACAGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGAGTCATCTGTGTCTGAATCCTGGGCTTGTTTTTACAGTGACA  250

seq1  CATAGCCTTTTTATTTAAACGTGGGCCCATAATTTTTTCAGTGGTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTTTTTATTTAAACGTGGGCCCATAATTTTTTCAGTGGTTTCTG  300

seq1  TGCTAGCAGACCCTGCTACTGGGAAAGCAGTTTTCTAGAAATATTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCAGACCCTGCTACTGGGAAAGCAGTTTTCTAGAAATATTGCCAG  350

seq1  GTGGAATGAAGGAGTGGGAGGCCCAGCCAGGAAGGGAGCTGAGCAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGAAGGAGTGGGAGGCCCAGCCAGGAAGGGAGCTGAGCAAGTGT  400

seq1  CACTCAGGGTTGGGGTCAGAGCAGTCTTAACAAGCTAGGCTCCACCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGGTTGGGGTCAGAGCAGTCTTAACAAGCTAGGCTCCACCAGGT  450

seq1  GTCCTCAGTAGGTCAGTTAGAGAATAACCATGTAATGGTGAGAAGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTAGGTCAGTTAGAGAATAACCATGTAATGGTGAGAAGCAGAA  500

seq1  AGGGGAGATTGAGTCAATGTGGCCACATTGGGAAGAGGAACAAGGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGATTGAGTCAATGTGGCCACATTGGGAAGAGGAACAAGGAGGTC  550

seq1  CAATGATCCCCCACCTCCAAAATGACCTTGCGGATCCTGACCTGAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCCCCCACCTCCAAAATGACCTTGCGGATCCTGACCTGAGGTTC  600

seq1  AGGTTTACATAGAAGGGCAAGTCAGACTTAAATAGCAAATCCGGGGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTACATAGAAGGGCAAGTCAGACTTAAATAGCAAATCCGGGGTAGT  650

seq1  CAGATGTGGTCCCCTCCACCGCATTGTCTAAGCTCTTTTCTCTCTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGGTCCCCTCCACCGCATTGTCTAAGCTCTTTTCTCTCTTAGAA  700

seq1  GGTGACCTAACAACCTGTATGAACCAGGCTTCAGCCTTTTCTTTCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTAACAACCTGTATGAACCAGGCTTCAGCCTTTTCTTTCTCCCA  750

seq1  GATTGGGAGTTCTCAAAAAGTTCTAATTTCTTGGAGCCTATTGTCTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGAGTTCTCAAAAAGTTCTAATTTCTTGGAGCCTATTGTCTCAGT  800

seq1  CAGAGAGCCAAAGGTAGCCACCAGAATCTCTTTAGAATATCTTCATACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCAAAGGTAGCCACCAGAATCTCTTTAGAATATCTTCATACCT  850

seq1  ACAGGGTAGCTAGCTACACAAGGGACACTTAGAAGGTCTAATTCTACTAG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGGGTAGCTAGCTACACAAGGGACACTTAGAAAGTCTAATTCTACTAG  900

seq1  GCTGTATTTTATACACAGTGGATTTTCCTTGTCAGTAATTGTTTCCTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTTTATACACAGTGGATTTTCCTTGTCAGTAATTGTTTCCTTTA  950

seq1  GATTTTTCTCACCTGGACTATTGCTTGAAATTGCCATATAGAACCTCTGG  1000
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  GATTTTTCTCA-CTGGACTATTGCTTGAAATTGCCATATAGAA-CTCTGG  998

seq1  CTGGTAAACAGAGTTCCCATAACCTGAGTACAGCCCTTAGACAGGTGTAC  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-GTAAACAGAGTTCCCATAACCTGAGTACAGCCCTTAGACAGGTGTAC  1047

seq1  CACCTTTTAAGAGTGAAACCTAC-TTACTAGTAGGCTGGCATTCTTAGGA  1099
      || ||||||||||||||  |||| ||||||||| ||| ||||||||| ||
seq2  CA-CTTTTAAGAGTGAA--CTACTTTACTAGTAAGCT-GCATTCTTA-GA  1092

seq1  ATAGTGAAGGGATCCAGGTGTGTGTGTGTGGCTAGGGCACTG-ATAGTAT  1148
      |||||||  |||||||||| |||| ||||||||||||||||| |||| ||
seq2  ATAGTGA--GGATCCAGGT-TGTG-GTGTGGCTAGGGCACTGAATAG-AT  1137

seq1  CTG-CTGCAGCATCAAATC-TGAT-CTATAAGA  1178
      ||| |||||||| |||||| |||| ||||||||
seq2  CTGTCTGCAGCACCAAATCTTGATACTATAAGA  1170