BAC Information

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BAC

Clone NameB6Ng01-135D03
Chromosome2 (Build37)
Map Location 172,614,503 - 172,760,295
singlet/doubletdoublet
Overlap geneBmp7
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D03.bB6Ng01-135D03.g
ACCDH935298DH935299
length1,020610
definitionDH935298|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D03, 5' end.DH935299|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,758,982 - 172,760,295)(172,614,503 - 172,615,111)
sequence
gaattcaccaattcaccccctagaacattcttgccaaaccattcaggggc
tccaccgccagcgtgtggggttctttgtgcggggggggggtcagcttggg
gcacttgctttatttattccagaactctctttcctagtccctgcaagtgt
ttatagaggcaggatggcttgcactgtaagctcgcttgctctcatgcacc
accatggctattatgtgagccggttggtattagctgtgtgctcagctggg
attgaattccccgggttttgcagcaaatggcatttgacaaacactatttg
acaaaaaatgtgacttggtatttcttaatgtggaacagatatttcacggt
taacctcccccgggtgaaaaaaatcgctcgacccccaagtgcaatggcgg
agcagatgaacaccagggctgggctgggaaatgccccccccctttccagg
atgggctgtttatgatttgggggatgtcaggagtgcacagagcccgacac
gccccgttgtgaagctcgagtagcgtgtgccaggctggcctttcaacatt
tgtgtcggaaggcatcgcggggagcggcgcaaagcctctgctgatcctct
aggagtggatcgaattaatgaggcctctgcgaacaccagggtttgagaaa
ctactttatcgtttgagaaccagagtgcttataatctggttcctgtacca
acatgtttaacgtgtgttaatgcatttccaaaccggagccgctcagcaca
gttctgcttttcattaattgatgtcggtagcatggtacagtatttcaaag
ggccggccaagcataaactgtgtttccaatttccttcctttcctgtgttt
gggatgccattgttaatttgttcccatgcaggagccggggctgccaaccg
gctttctataaagggcttcacagtgaaggcttccagccctcactcgtgct
cgggccgcctggccagttttctgaacactttgcagtaattttggatgatc
tatggggtgggggggttggg
gaattctctgcaaagtcacacagcaatgccaagtgtctcctagcatgcag
gaagccctgcatcctgtccccagcaccatagaaacagcacccagcactgc
accgctgaaaccccagcactcaggaggttgaggcagcaggatccgctcag
ggtcgtcttccctgcctatagagttggaggaagcccataaagctgcccca
agcccgcgcttagggtcctcaagtcaagctccctcccatcttgcctgggt
gcagtgagcattggaaatccaggcacaggtgtaattacggactcacactt
ccaagagccaacttgcccacgctggcaacggccttttaagacggctgtca
ctcagcatccgcaaggctaatgacggggtagggaacatgaaagtggaggg
gagcgggtggggtggtcagcggctgcccgccccttccttttaagtgctca
ttatgaaatatttatctgattgacagccctggcagccccaccctaagccc
ctttcatgttgcatggctctgtgcccctccgcccagccagggcctcacag
ccaggggctgctcctggctccctgccctccctgatgaggagcaggggaga
ggggtggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172758982_172760295
seq2: B6Ng01-135D03.b_47_1066 (reverse)

seq1  CCCAACAACAAGAAGTATATTTATTATGCACCTATTTCTGGGATGATGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTGTGTTTTCTTGAGACTCTTTTAAGGAGAGGACTATTCCCCAGCTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACGGAGTGTGGGGACAGACTCGGAGACGTTAAAATAGCTCGCCCAAGGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACACAGACGCTATTCTACGGTGGAAACAGACGCATGGGTTTAAGCCGCG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTAAAAAGAATTACTGTGGATGTTCCTCAGGGCGCCCTTGCCAAGCCAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCACCGCTGTCACCAAGAACTTCCGTTCCTCGCAGGGAAGCCCCCAAC  300
                                                 ||| | |
seq2  -------------------------------------------CCCAACC  7

seq1  CCCCCACCCCATAGATCATCCAGAATTAACTGCAAAGTG-TCAGGAAACT  349
      |||||||||||||||||||||| |||| ||||||||||| |||| |||||
seq2  CCCCCACCCCATAGATCATCCAAAATT-ACTGCAAAGTGTTCAGAAAACT  56

seq1  GGGCCAGGCGGCCCGAGCACGAGTGAGGGCTGGAAGCCTTCACTGTGAAG  399
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGCCAGGCGGCCCGAGCACGAGTGAGGGCTGGAAGCCTTCACTGTGAAG  105

seq1  CCCTTTATAGAAAGCCGGTTGGCAGCCCCGGCTCCTGCATGGGAACAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATAGAAAGCCGGTTGGCAGCCCCGGCTCCTGCATGGGAACAAAT  155

seq1  TAACAATGGCATCCCAAACACAGGAAAGGAAGGAAATTGGAAACACAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGGCATCCCAAACACAGGAAAGGAAGGAAATTGGAAACACAGTT  205

seq1  TATGCTTGGCCGGCCCTTTGAAATACTGTACCATGCTACCGACATCAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGGCCGGCCCTTTGAAATACTGTACCATGCTACCGACATCAATT  255

seq1  AATGAAAAGCAGAACTGTGCTGAGCGGCTCCGGTTTGGAAATGCATTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGCAGAACTGTGCTGAGCGGCTCCGGTTTGGAAATGCATTAAC  305

seq1  ACACGTTAAACATGTTGGTACAGGAACCAGATTATAAGCACTCTGGTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTAAACATGTTGGTACAGGAACCAGATTATAAGCACTCTGGTTCT  355

seq1  CAAACGATAAAGTAGTTTCTCAAACCCTGGTGTTCGCAGAGGCCTCATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGATAAAGTAGTTTCTCAAACCCTGGTGTTCGCAGAGGCCTCATTA  405

seq1  ATTCGATCCACTCCTAGAGGATCAGCAGAGGCTTTGCGCCGCTCCCCGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATCCACTCCTAGAGGATCAGCAGAGGCTTTGCGCCGCTCCCCGCG  455

seq1  ATGCCTTCCGACACAAATGTTGAAAGGCCAGCCTGGCACACGCTACTCGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCCGACACAAATGTTGAAAGGCCAGCCTGGCACACGCTACTCGA  505

seq1  GCTTCACAACGGGGCGTGTCGGGCTCTGTGCACTCCTGACATCCCCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAACGGGGCGTGTCGGGCTCTGTGCACTCCTGACATCCCCCAAA  555

seq1  TCATAAACAGCCCATCCTGGAAAGGGGGGGGGCATTTCCCAGCCCAGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACAGCCCATCCTGGAAAGGGGGGGGGCATTTCCCAGCCCAGCCC  605

seq1  TGGTGTTCATCTGCTCCGCCATTGCACTTGGGGGTCGAGCGATTTTTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCATCTGCTCCGCCATTGCACTTGGGGGTCGAGCGATTTTTTTC  655

seq1  ACCCGGGGGAGGTTAACCGTGAAATATCTGTTCCACATTAAGAAATACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGGGAGGTTAACCGTGAAATATCTGTTCCACATTAAGAAATACCA  705

seq1  AGTCACATTTTTTGTCAAATAGTGTTTGTCAAATGCCATTTGCTGCAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATTTTTTGTCAAATAGTGTTTGTCAAATGCCATTTGCTGCAAAA  755

seq1  CCCGGGGAATTCAATCCCAGCTGAGCACACAGCTAATACCAACCGGCTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGAATTCAATCCCAGCTGAGCACACAGCTAATACCAACCGGCTCA  805

seq1  CATAATAGCCATGGTGGTGCATGAGAGCAAGCGAGCTTACAGTGCAAGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGCCATGGTGGTGCATGAGAGCAAGCGAGCTTACAGTGCAAGCC  855

seq1  ATCCTGCCTCTATAAACACTTGCAGGGACTAGGAAAGAGAGTTCTGGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCTCTATAAACACTTGCAGGGACTAGGAAAGAGAGTTCTGGAAT  905

seq1  AAATAAAGCAAGTGCCCCAAGCTGACCCCCCCCCCGCACAAAGAACCCCA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCAAGTGCCCCAAGCTGACCCCCCCCCCGCACAAAGAACCCCA  955

seq1  CACGCTGGCGGTGGAGCCCCTGAATGGTTTGGCAAGAATGTTCTAGGGGG  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGGCGGTGGAGCCCCTGAATGGTTTGGCAAGAATGTTCTAGGGGG  1005

seq1  TGAATTGGTGAATTC  1314
      |||||||||||||||
seq2  TGAATTGGTGAATTC  1020

seq1: chr2_172614503_172615111
seq2: B6Ng01-135D03.g_68_676

seq1  GAATTCTCTGCAAAGTCACACAGCAATGCCAAGTGTCTCCTAGCATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAAAGTCACACAGCAATGCCAAGTGTCTCCTAGCATGCAG  50

seq1  GAAGCCCTGCATCCTGTCCCCAGCACCATAGAAACAGCACCCAGCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGCATCCTGTCCCCAGCACCATAGAAACAGCACCCAGCACTGC  100

seq1  ACCGCTGAAACCCCAGCACTCAGGAGGTTGAGGCAGCAGGATCCGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGAAACCCCAGCACTCAGGAGGTTGAGGCAGCAGGATCCGCTCAG  150

seq1  GGTCGTCTTCCCTGCCTATAGAGTTGGAGGAAGCCCATAAAGCTGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTCTTCCCTGCCTATAGAGTTGGAGGAAGCCCATAAAGCTGCCCCA  200

seq1  AGCCCGCGCTTAGGGTCCTCAAGTCAAGCTCCCTCCCATCTTGCCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGCGCTTAGGGTCCTCAAGTCAAGCTCCCTCCCATCTTGCCTGGGT  250

seq1  GCAGTGAGCATTGGAAATCCAGGCACAGGTGTAATTACGGACTCACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGCATTGGAAATCCAGGCACAGGTGTAATTACGGACTCACACTT  300

seq1  CCAAGAGCCAACTTGCCCACGCTGGCAACGGCCTTTTAAGACGGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCCAACTTGCCCACGCTGGCAACGGCCTTTTAAGACGGCTGTCA  350

seq1  CTCAGCATCCGCAAGGCTAATGACGGGGTAGGGAACATGAAAGTGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATCCGCAAGGCTAATGACGGGGTAGGGAACATGAAAGTGGAGGG  400

seq1  GAGCGGGTGGGGTGGTCAGCGGCTGCCCGCCCCTTCCTTTTAAGTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGTGGGGTGGTCAGCGGCTGCCCGCCCCTTCCTTTTAAGTGCTCA  450

seq1  TTATGAAATATTTATCTGATTGACAGCCCTGGCAGCCCCACCCTAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATATTTATCTGATTGACAGCCCTGGCAGCCCCACCCTAAGCCC  500

seq1  CTTTCATGTTGCATGGCTCTGTGCCCCTCCGCCCAGCCAGGGCCTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTTGCATGGCTCTGTGCCCCTCCGCCCAGCCAGGGCCTCACAG  550

seq1  CCAGGGGCTGCTCCTGGCTCCCTGCCCTCCCTGATGAGGAGCAGGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCTGCTCCTGGCTCCCTGCCCTCCCTGATGAGGAGCAGGGGAGA  600

seq1  GGGGTGGAG  609
      |||||||||
seq2  GGGGTGGAG  609