BAC Information

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BAC

Clone NameB6Ng01-135D20
Chromosome2 (Build37)
Map Location 131,022,375 - 131,165,222
singlet/doubletdoublet
Overlap geneCdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24
Upstream geneTmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb
Downstream geneLOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D20.bB6Ng01-135D20.g
ACCDH935332DH935333
length1,1341,061
definitionDH935332|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D20, 5' end.DH935333|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,164,093 - 131,165,222)(131,022,375 - 131,023,433)
sequence
gaattccttaagactttatctcgtcaaggggctccttaggatatgagagg
ctgctgctgtaactttctttatactgttgtattctttggtaaaaacaagt
ttaatcagaagtaaattgaattgtttgaattgaggatttaatcttttgtc
agatggtactgcctttgtttttgagtatcatatcaagctatgaattattt
cttttaaaattgacactctaatagctctgctattattctaaaggtggaaa
catatgaaagccctttttaattaatcagtggaaggaaagcataccaggtt
aagatgaaaaagtccagactgctgaagctgattggacccagcgcttcctc
agatgcactgtatgtctgtccattccacccattcttcatgagtctttggt
aaatgttactaagctcccaagaaataacaaatctggaataaaatacaaga
taaataaataaataccacagatgacattggttttaaatttatttcctcaa
ccatatgaagaacagatacttgcatatctttttctagatagatgtactta
tttcttaagcaagattttatttttagagaattaaacctttgatctaaagc
tagttggactacagaaagctctgcttccctcatattttaaagtataaagc
tgaaaagaacttcacttgttcagttttaagatttctcagaagtactacag
agtaaccaaatcctagaatactcttaagatttagactattggaggctgct
cgcttgaacataatctagttaataatttgtttctccattttaatttggtt
taaatttactatgtacaaagtacttgagtagtcagaactgtgaagtacat
gacttccataaagataaacataaaagctctaggatatgctttgcattttt
aatttttatattatttctctccaaaaactattgagcttttttatgtatgt
taccctaaaatactgcattttcatgaaattatgtataggttaagaaaatg
aagttgcaccacctcaacaacatggctgccttaaacaagactgagcaatg
acaacgtcagttggtcatgcttatttgtggaaggaccagttcattcactc
cttgaaggggagggagaatggtgttatcctggga
gaattctacgtagctaggcttacaggcttgtaccaccagaccaggctctt
gagtggaccttgactgtgtcaaggaccttgactctcttgcttcctctttc
ctgggacgtgtcattgagtgctgtaacaggttatgaaacagctttccaga
aacagtggccactcctggtttacctctgccttcaccagagtgtcctctac
ctagtagccaggcttgtagtaggtgcattcctgtgctgaggagtctgtgt
acttgggaggctcttaaagcagtgtgtacagggcatggcctcttcctgac
atgtggcctgccctgaacctcctccaatgttgctccaggtgccgcttcat
cagggaacgggaccgtgcagctaacgactaccccagcctgtactacccgg
agatgtacatcctcaaaggcggctacaaggagttcttcccacagcatccg
gtactatgggtgggatggccacagctctcctggcatggactgtagggaca
gggtccaactaggctttaggccccacccccaccccagaacttcctctttc
tcccatactgatgggctctcttcatcttcccatcctctagaacttttgtg
agccccaggactaccgacccatgaaccacgaggctttcagggatgagctg
aggaactttcgccttaagactcgcagctgggctggggaacggagcaggag
ggaactttgtagcacgctgcaagaccagtgatgatgagcctgctgccatc
cttacctcgtgaggcttgggagccagtgggtcccatgggcctgtgaggcc
acctaccttatagaggcctcaggtgctatagggggttgggggcatggtgt
ggtgtcacatctgtctgccctgtcctcaatttcctgtctcactccactta
ttttctgtatcttggtactggtcccagcttaaagagctgaacctgagggt
ggatgccagctgaggagaagtctgttgtggttcagtgggagtccttttac
aggccttttttcctttgttgtgttgacctctttgccttcccccattttgg
ggagaagcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131164093_131165222
seq2: B6Ng01-135D20.b_36_1169 (reverse)

seq1  TCCCAG--TAACAACCATTCTCCCTCCC--TC-AGGAGTGATTGGAAACT  45
      ||||||  |||| |||||||||||||||  || |||||||| ||  ||||
seq2  TCCCAGGATAAC-ACCATTCTCCCTCCCCTTCAAGGAGTGAATG--AACT  47

seq1  GGCCCCTTCCACAA--TAGCATGACC-ACTGACGTTGTCATTGCTCAGGT  92
      ||  ||||||||||   ||||||||| |||||||||||||||||||| ||
seq2  GG-TCCTTCCACAAATAAGCATGACCAACTGACGTTGTCATTGCTCA-GT  95

seq1  CTTGTTT-AGGCAGCCATGTTGTTGAGGT-GTGCAACCTTCATTTTCTTT  140
      ||||||| ||||||||||||||||||||| |||||| |||||||||| ||
seq2  CTTGTTTAAGGCAGCCATGTTGTTGAGGTGGTGCAA-CTTCATTTTC-TT  143

seq1  AACCTATACATAATTTCATGAAAATGCAGTATTTTAGGGTAACATACAT-  189
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACCTATACATAATTTCATGAAAATGCAGTATTTTAGGGTAACATACATA  193

seq1  AAAAAGCTCAATAGTTTTTGGAGAGAAATAATATAAAAATTAAAAATGCA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTCAATAGTTTTTGGAGAGAAATAATATAAAAATTAAAAATGCA  243

seq1  AAGCATATCCTAGAGCTTTTATGTTTATCTTTATGGAAGTCATGTACTTC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATCCTAGAGCTTTTATGTTTATCTTTATGGAAGTCATGTACTTC  293

seq1  ACAGTTCTGACTACTCAAGTACTTTGTACATAGTAAATTTAAACCAAATT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTGACTACTCAAGTACTTTGTACATAGTAAATTTAAACCAAATT  343

seq1  AAAATGGAGAAACAAATTATTAACTAGATTATGTTCAAGCGAGCAGCCTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGAAACAAATTATTAACTAGATTATGTTCAAGCGAGCAGCCTC  393

seq1  CAATAGTCTAAATCTTAAGAGTATTCTAGGATTTGGTTACTCTGTAGTAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTCTAAATCTTAAGAGTATTCTAGGATTTGGTTACTCTGTAGTAC  443

seq1  TTCTGAGAAATCTTAAAACTGAACAAGTGAAGTTCTTTTCAGCTTTATAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAAATCTTAAAACTGAACAAGTGAAGTTCTTTTCAGCTTTATAC  493

seq1  TTTAAAATATGAGGGAAGCAGAGCTTTCTGTAGTCCAACTAGCTTTAGAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATGAGGGAAGCAGAGCTTTCTGTAGTCCAACTAGCTTTAGAT  543

seq1  CAAAGGTTTAATTCTCTAAAAATAAAATCTTGCTTAAGAAATAAGTACAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTTAATTCTCTAAAAATAAAATCTTGCTTAAGAAATAAGTACAT  593

seq1  CTATCTAGAAAAAGATATGCAAGTATCTGTTCTTCATATGGTTGAGGAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGAAAAAGATATGCAAGTATCTGTTCTTCATATGGTTGAGGAAA  643

seq1  TAAATTTAAAACCAATGTCATCTGTGGTATTTATTTATTTATCTTGTATT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAAACCAATGTCATCTGTGGTATTTATTTATTTATCTTGTATT  693

seq1  TTATTCCAGATTTGTTATTTCTTGGGAGCTTAGTAACATTTACCAAAGAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAGATTTGTTATTTCTTGGGAGCTTAGTAACATTTACCAAAGAC  743

seq1  TCATGAAGAATGGGTGGAATGGACAGACATACAGTGCATCTGAGGAAGCG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAATGGGTGGAATGGACAGACATACAGTGCATCTGAGGAAGCG  793

seq1  CTGGGTCCAATCAGCTTCAGCAGTCTGGACTTTTTCATCTTAACCTGGTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCAATCAGCTTCAGCAGTCTGGACTTTTTCATCTTAACCTGGTA  843

seq1  TGCTTTCCTTCCACTGATTAATTAAAAAGGGCTTTCATATGTTTCCACCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCTTCCACTGATTAATTAAAAAGGGCTTTCATATGTTTCCACCT  893

seq1  TTAGAATAATAGCAGAGCTATTAGAGTGTCAATTTTAAAAGAAATAATTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATAATAGCAGAGCTATTAGAGTGTCAATTTTAAAAGAAATAATTC  943

seq1  ATAGCTTGATATGATACTCAAAAACAAAGGCAGTACCATCTGACAAAAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGATATGATACTCAAAAACAAAGGCAGTACCATCTGACAAAAGA  993

seq1  TTAAATCCTCAATTCAAACAATTCAATTTACTTCTGATTAAACTTGTTTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCTCAATTCAAACAATTCAATTTACTTCTGATTAAACTTGTTTT  1043

seq1  TACCAAAGAATACAACAGTATAAAGAAAGTTACAGCAGCAGCCTCTCATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGAATACAACAGTATAAAGAAAGTTACAGCAGCAGCCTCTCATA  1093

seq1  TCCTAAGGAGCCCCTTGACGAGATAAAGTCTTAAGGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGAGCCCCTTGACGAGATAAAGTCTTAAGGAATTC  1134

seq1: chr2_131022375_131023433
seq2: B6Ng01-135D20.g_69_1129

seq1  GAATTCTACGTAGCTAGGCTTACAGGCTTGTACCACCAGACCAGGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGTAGCTAGGCTTACAGGCTTGTACCACCAGACCAGGCTCTT  50

seq1  GAGTGGACCTTGACTGTGTCAAGGACCTTGACTCTCTTGCTTCCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGACCTTGACTGTGTCAAGGACCTTGACTCTCTTGCTTCCTCTTTC  100

seq1  CTGGGACGTGTCATTGAGTGCTGTAACAGGTTATGAAACAGCTTTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACGTGTCATTGAGTGCTGTAACAGGTTATGAAACAGCTTTCCAGA  150

seq1  AACAGTGGCCACTCCTGGTTTACCTCTGCCTTCACCAGAGTGTCCTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGCCACTCCTGGTTTACCTCTGCCTTCACCAGAGTGTCCTCTAC  200

seq1  CTAGTAGCCAGGCTTGTAGTAGGTGCATTCCTGTGCTGAGGAGTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGCCAGGCTTGTAGTAGGTGCATTCCTGTGCTGAGGAGTCTGTGT  250

seq1  ACTTGGGAGGCTCTTAAAGCAGTGTGTACAGGGCATGGCCTCTTCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCTCTTAAAGCAGTGTGTACAGGGCATGGCCTCTTCCTGAC  300

seq1  ATGTGGCCTGCCCTGAACCTCCTCCAATGTTGCTCCAGGTGCCGCTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCTGCCCTGAACCTCCTCCAATGTTGCTCCAGGTGCCGCTTCAT  350

seq1  CAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGG  400

seq1  AGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG  450

seq1  GTACTATGGGTGGGATGGCCACAGCTCTCCTGGCATGGACTGTAGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATGGGTGGGATGGCCACAGCTCTCCTGGCATGGACTGTAGGGACA  500

seq1  GGGTCCAACTAGGCTTTAGGCCCCACCCCCACCCCAGAACTTCCTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAACTAGGCTTTAGGCCCCACCCCCACCCCAGAACTTCCTCTTTC  550

seq1  TCCCATACTGATGGGCTCTCTTCATCTTCCCATCCTCTAGAACTTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATACTGATGGGCTCTCTTCATCTTCCCATCCTCTAGAACTTTTGTG  600

seq1  AGCCCCAGGACTACCGACCCATGAACCACGAGGCTTTCAGGGATGAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGGACTACCGACCCATGAACCACGAGGCTTTCAGGGATGAGCTG  650

seq1  AGGAACTTTCGCCTTAAGACTCGCAGCTGGGCTGGGGAACGGAGCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTCGCCTTAAGACTCGCAGCTGGGCTGGGGAACGGAGCAGGAG  700

seq1  GGAACTTTGTAGCAGGCTGCAAGACCAGTGATGATGAGCCTGCTGCCATC  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAACTTTGTAGCACGCTGCAAGACCAGTGATGATGAGCCTGCTGCCATC  750

seq1  CTTACCTCGTGAGGCTTGGGAGCCAGTGGGTCCCATGGGCCTGTGAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCGTGAGGCTTGGGAGCCAGTGGGTCCCATGGGCCTGTGAGGCC  800

seq1  ACCTACCTTATAGAGGCCTCAGGTGCTATAGGGGGTTGGGGGCATGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTTATAGAGGCCTCAGGTGCTATAGGGGGTTGGGGGCATGGTGT  850

seq1  GGTGTCACATCTGTCTGCCCCTGTCCTCAATTTTCCTGTCTCACTCCACT  900
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  GGTGTCACATCTGTCTG-CCCTGTCCTCAA-TTTCCTGTCTCACTCCACT  898

seq1  TATTTTCTGTATCTTGGTACTGGTCCCAGCTTAAAGAGCTGAACCTGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGTATCTTGGTACTGGTCCCAGCTTAAAGAGCTGAACCTGAGG  948

seq1  GTGGATGCCAGCTGAGGAGAAGTCTGTTGT-GTTCAGTGGGAGTCCTTTT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGGATGCCAGCTGAGGAGAAGTCTGTTGTGGTTCAGTGGGAGTCCTTTT  998

seq1  ACA-GTCTTTTTTCCTTGTTTGTGTTGA-CTCTTTGTCTTCCCGCTTTTT  1047
      ||| | |||||||||||  ||||||||| ||||||| |||||| | ||||
seq2  ACAGGCCTTTTTTCCTTTGTTGTGTTGACCTCTTTGCCTTCCCCCATTTT  1048

seq1  GGGGAG-AGCCTC  1059
      |||||| ||||||
seq2  GGGGAGAAGCCTC  1061