BAC Information

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BAC

Clone NameB6Ng01-135I03
Chromosome2 (Build37)
Map Location 135,822,466 - 135,961,691
singlet/doubletdoublet
Overlap genePlcb4, 6330527O06Rik, Pak7
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788
Downstream geneLOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I03.bB6Ng01-135I03.g
ACCDH935525DH935526
length1,208722
definitionDH935525|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I03, 5' end.DH935526|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,822,466 - 135,823,679)(135,961,119 - 135,961,691)
sequence
gaattctgtacatgcatccaatgaaatacaataatatctaccttctattt
cctccttctgaattcccccatacacatcttcctcccaactttatatctta
cttttcatttaaaaaagcaaacaaacaaacaaacaaaaaacactaagtcc
agttagtgcagtttctatgtgcatgggtgtggagcctctttctatatttt
taaatcagtgtcttgtaagttttcagactctgtactacataacaactctt
cagagagggatactagggatatattgtccctgggacattagaaaataccc
atttaatcttatttttattctcaagcataagtggtatgaaggtgatactt
aggactggttgttaaagatgagacaatgaccatggagccgtcctcatgag
caggagttgaagtcctacaatgtgtaaagccctttgtcacgcgaggaaca
ggggacccaggaagcctgcctgggggtttctttctaggtccatgctgccg
aatgcagatctgcctcccgactctgcagagagaattttcccagtacttga
aaacaagacctaaaaaaaaacacattgaaagtttcttcgaagccagttac
cagatgttctcatctgcacagccagctccaaggagaacgtcctcttattg
cctagactttgttacctggttgctgaaattcatgtaaagggggagtttgg
ttatatgcctttgatcctctgcagtggactggctaggctggctggggtga
atgcaccttgcatttctgatactttcaacttacagtgtgggctcatcaga
ctccatcccatcctcagcgaaagagcgcctgcagcctgcagccgtgtccc
ctgttcttcatacccgactgaagggagcgatggaagcgagacagggagtt
tgcactgagtgctcttgcctaactgtctctcatgagttttccattcagtg
tgtttcagtgacagagaaggtgaatggggaaggcagaaaagaaaagccag
ggttggagaaatcagattatatgtttctgcaaaggcagacaataaataag
gcaaattgcaaaagggaataattatgcagccgtgacttctaatacttaca
gggatcttaactaatgtcggccggctttaggcgctgaataaaaaccatcg
taccatttatgtgagcctttctggaagagcccaaagaacattttcgcatg
ctggagaa
gaattcttggggggagggttatttgtttgttttgttttgttttgttgttt
gtctgattttttttgtccaagatacagataaaggaaattaaattttgttg
tctatgtgtcttagtctgtgcagatagaggacctggaaatagttaaaagt
caatgttcttgtttttagatagatagatagatagatagatagatagatag
atagagatagatagatagatagatagatagatagatagatatagatatcc
atacatgaatgcatgcatatatacatacatgagaaagagagaggtatata
acctgtcttagttacttttctattgttatgaagagacaacatggccaagg
aaacttttctttaaagagtttatttgggtttcttgttccagagggtgtgt
ctatgaccatcatggagaggaacatggcagcaggtagacatgatgccata
gttttaactgagaccttacttctggtccataagcatgatgcagagagaaa
acaaactgaaatgatatgcatgttggaatcctcaaagccatcccaattct
tccaacaaggcacacatcctgatctttccaagcagttccaccaactaggg
gccaaatatctgtgtgtatgacccatgaaagccattctcattcaaactgc
atactgctagcatattcttgcatgaaatgtactgttctgaatcacatatt
ataacttcctccttcattagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_135822466_135823679
seq2: B6Ng01-135I03.b_46_1253

seq1  GAATTCTGTACATGCATCCAATGAAATACAATAATATCTACCTTCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACATGCATCCAATGAAATACAATAATATCTACCTTCTATTT  50

seq1  CCTCCTTCTGAATTCCCCCATACACATCTTCCTCCCAACTTTATATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTGAATTCCCCCATACACATCTTCCTCCCAACTTTATATCTTA  100

seq1  CTTTTCATTTAAAAAAGCAAACAAACAAACAAACAAAAAACACTAAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTTAAAAAAGCAAACAAACAAACAAACAAAAAACACTAAGTCC  150

seq1  AGTTAGTGCAGTTTCTATGTGCATGGGTGTGGAGCCTCTTTCTATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTGCAGTTTCTATGTGCATGGGTGTGGAGCCTCTTTCTATATTTT  200

seq1  TAAATCAGTGTCTTGTAAGTTTTCAGACTCTGTACTACATAACAACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGTGTCTTGTAAGTTTTCAGACTCTGTACTACATAACAACTCTT  250

seq1  CAGAGAGGGATACTAGGGATATATTGTCCCTGGGACATTAGAAAATACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGATACTAGGGATATATTGTCCCTGGGACATTAGAAAATACCC  300

seq1  ATTTAATCTTATTTTTATTCTCAAGCATAAGTGGTATGAAGGTGATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCTTATTTTTATTCTCAAGCATAAGTGGTATGAAGGTGATACTT  350

seq1  AGGACTGGTTGTTAAAGATGAGACAATGACCATGGAGCCGTCCTCATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGTTGTTAAAGATGAGACAATGACCATGGAGCCGTCCTCATGAG  400

seq1  CAGGAGTTGAAGTCCTACAATGTGTAAAGCCCTTTGTCACGCGAGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTGAAGTCCTACAATGTGTAAAGCCCTTTGTCACGCGAGGAACA  450

seq1  GGGGACCCAGGAAGCCTGCCTGGGGGTTTCTTTCTAGGTCCATGCTGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCCAGGAAGCCTGCCTGGGGGTTTCTTTCTAGGTCCATGCTGCCG  500

seq1  AATGCAGATCTGCCTCCCGACTCTGCAGAGAGAATTTTCCCAGTACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATCTGCCTCCCGACTCTGCAGAGAGAATTTTCCCAGTACTTGA  550

seq1  AAACAAGACCTAAAAAAAAACACATTGAAAGTTTCTTCGAAGCCAGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGACCTAAAAAAAAACACATTGAAAGTTTCTTCGAAGCCAGTTAC  600

seq1  CAGATGTTCTCATCTGCACAGCCAGCTCCAAGGAGAACGTCCTCTTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTCTCATCTGCACAGCCAGCTCCAAGGAGAACGTCCTCTTATTG  650

seq1  CCTAGACTTTGTTACCTGGTTGCTGAAATTCATGTAAAGGGGGAGTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACTTTGTTACCTGGTTGCTGAAATTCATGTAAAGGGGGAGTTTGG  700

seq1  TTATATGCCTTTGATCCTCTGCAGTGGACTGGCTAGGCTGGCTGGGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCCTTTGATCCTCTGCAGTGGACTGGCTAGGCTGGCTGGGGTGA  750

seq1  ATGCACCTTGCATTTCTGATACTTTCAACTTACAGTGTGGGCTCATCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTTGCATTTCTGATACTTTCAACTTACAGTGTGGGCTCATCAGA  800

seq1  CTCCATCCCATCCTCAGCGAAGGAGCGCCTGCAGCCTGCAGCCGTGTCCC  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCCATCCCATCCTCAGCGAAAGAGCGCCTGCAGCCTGCAGCCGTGTCCC  850

seq1  CTGTTCTTCATACCCGACTGAAGGGAGCGATGGAAGCGAGACAGGGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCATACCCGACTGAAGGGAGCGATGGAAGCGAGACAGGGAGTT  900

seq1  TGCACTGAAGTGCTCTTGCCTAACTGTCTCTCATGAGTTTTCCATTCAGT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTG-AGTGCTCTTGCCTAACTGTCTCTCATGAGTTTTCCATTCAGT  949

seq1  GTGTTTCAGGTGACAGGAGAAGGTGAATGGGGAAGGCAGAAAAAGAAAAG  1000
      |||||||| |||||| ||||||||||||||||||||||| ||||||||||
seq2  GTGTTTCA-GTGACA-GAGAAGGTGAATGGGGAAGGCAG-AAAAGAAAAG  996

seq1  CCAGGGTTGGAGAAATCAGAATATATGTTTCTGCAAAGGCAGACAATAAA  1050
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGGGTTGGAGAAATCAGATTATATGTTTCTGCAAAGGCAGACAATAAA  1046

seq1  TAAGGCATA-TGCAAAAGGGAATAATTATGCAGCCGTGACTTCTTAATAC  1099
      ||||||| | ||||||||||||||||||||||||||||||||| ||||||
seq2  TAAGGCAAATTGCAAAAGGGAATAATTATGCAGCCGTGACTTC-TAATAC  1095

seq1  -TACAGGGATCCTTAGCT-ATGCCGG-CTGCTTAAGGGCGCTGAATAAAA  1146
       ||||||||| |||| || ||| ||| | |||| | ||||||||||||||
seq2  TTACAGGGAT-CTTAACTAATGTCGGCCGGCTTTA-GGCGCTGAATAAAA  1143

seq1  ACCATCGTAGCATTTATTGTGAGCGTTCCTGGAAGGAAGCCAGAGGAACA  1196
      ||||||||| |||||| ||||||| || |||||||  ||||  | |||||
seq2  ACCATCGTACCATTTA-TGTGAGCCTTTCTGGAAG--AGCCCAAAGAACA  1190

seq1  TTTCGGCATGCTGGAGAA  1214
      |||  |||||||||||||
seq2  TTTTCGCATGCTGGAGAA  1208

seq1: chr2_135961119_135961691
seq2: B6Ng01-135I03.g_232_790 (reverse)

seq1  ATCTAATGGAGGGGAGGAAGTTATAATATTGTGATTCCTGATACAGTACA  50
      |||||||| |  |||||||||||||||| ||||||| | || ||||||||
seq2  ATCTAATGAA--GGAGGAAGTTATAATA-TGTGATT-CAGA-ACAGTACA  45

seq1  TTTTCATTGCAAGAATATGCTAGGCAGTATGGCAGTTTGAATGAGAATGG  100
       ||||| ||||||||||||||| ||||||| |||||||||||||||||||
seq2  -TTTCA-TGCAAGAATATGCTA-GCAGTAT-GCAGTTTGAATGAGAATGG  91

seq1  CTTTCATGGGGTCATACACACAGATATTTGGCCCCTAGTTGGTGGAACTG  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAT-GGGTCATACACACAGATATTTGGCCCCTAGTTGGTGGAACTG  140

seq1  CTTGGGAAAGATCAGGATGTGTGGCCTTGTTGGAAGAATTGGGGATGGGC  200
      ||| |||||||||||||||||| ||||||||||||||||| ||||| |||
seq2  CTT-GGAAAGATCAGGATGTGT-GCCTTGTTGGAAGAATT-GGGAT-GGC  186

seq1  TTTGAGGATTCCAACATGCATATCATTTCAGTTTGTTTTCTCTCTGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGATTCCAACATGCATATCATTTCAGTTTGTTTTCTCTCTGCATC  236

seq1  ATGCTTATGGACCAGAAGTAAGGTCTCAGTTAAAACTATGGCATCATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATGGACCAGAAGTAAGGTCTCAGTTAAAACTATGGCATCATGTC  286

seq1  TACCTGCTGCCATGTTCCTCTCCATGATGGTCATAGACACACCCTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGCCATGTTCCTCTCCATGATGGTCATAGACACACCCTCTGGA  336

seq1  ACAAGAAACCCAAATAAACTCTTTAAAGAAAAGTTTCCTTGGCCATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAACCCAAATAAACTCTTTAAAGAAAAGTTTCCTTGGCCATGTTG  386

seq1  TCTCTTCATAACAATAGAAAAGTAACTAAGACAGGTTATATACCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATAACAATAGAAAAGTAACTAAGACAGGTTATATACCTCTCTC  436

seq1  TTTCTCATGTATGTATATATGCATGCATTCATGTATGGATATCTATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGTATGTATATATGCATGCATTCATGTATGGATATCTATATCT  486

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTCTATCTATCTATCTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTCTATCTATCTATCTATCT  536

seq1  ATCTATCTATCTATCTATCTAAA  573
      |||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTAAA  559