BAC Information

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BAC

Clone NameB6Ng01-135I08
Chromosome2 (Build37)6 (Build37)
Map Location 173,796,412 - 173,796,767111,965,316 - 111,965,449
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
Downstream geneLOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I08.bB6Ng01-135I08.g
ACCDH935535DH935536
length356498
definitionDH935535|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I08, 5' end.DH935536|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(173,796,412 - 173,796,767)(111,965,316 - 111,965,449)
sequence
tctctgagcataggtgtgacacactgacgggtgtgggagaaagtcattaa
gaagggcagagggcaggtgtgtgcctcaagggaatgagcaaaaaaaaaaa
aaccggtcctaccagatgaaaaggtactaatactggctcatcagaggagt
ggcttcatactgacagaaccacagtttggaaacttcccccaaagaaaggg
cagttgacctggagctgaagaacaaaagttcttgaggcagagagagcagg
aaatgcctttcaaacagaggaaacattgggtacaacgtccacagggtgaa
ggcagaggggaaggaggaagaggaggagaaggaagaggaggaggaggagg
aggatc
ttggccacagttgtttactctcagagcttggaatgtttctttgtacatcc
tttcagctttatagtgatgaaaattctggggtaattctgctgctgtatat
gagttgacccttttccatgatgtttttagaattatttttatattttgttt
atttggcatcttgattacaatgtgtcatggagagtttcttatttggccat
gtctgtttggagttctatgtgcctcttctgtttggatgtctgctttgtcc
cataaactggatagattttctgctgtaaatgtagtattatgtttattcca
cttgattttacctctactccatcttcaataccttaaattctcatgtttgt
cctcgtgaatgcatctcagatttcttactaatcatattcgtttttccaca
tatatatatatatatatatatatatatatatatatatatatagatataga
tatatatatagatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173796412_173796767
seq2: B6Ng01-135I08.b_49_404

seq1  TCTCTGAGCATAGGTGTGACACACTGACAGGTGTGGGAGAAAGTCATTAA  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCTGAGCATAGGTGTGACACACTGACGGGTGTGGGAGAAAGTCATTAA  50

seq1  GAAGGGCAGAGGGCAGGTGTGTGCCTCAAGGGAATGAGCAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCAGAGGGCAGGTGTGTGCCTCAAGGGAATGAGCAAAAAAAAAAA  100

seq1  AACCGGTCCTACCAGATGAAAAGGTACTAATACTGGCTCATCAGAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGTCCTACCAGATGAAAAGGTACTAATACTGGCTCATCAGAGGAGT  150

seq1  GGCTTCATACTGACAGAACCACAGTTTGGAAACTTCCCCCAAAGAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATACTGACAGAACCACAGTTTGGAAACTTCCCCCAAAGAAAGGG  200

seq1  CAGTTGACCTGGAGCTGAAGAACAAAAGTTCTTGAGGCAGAGAGAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACCTGGAGCTGAAGAACAAAAGTTCTTGAGGCAGAGAGAGCAGG  250

seq1  AAATGCCTTTCAAACAGAGGAAACATTGGGTACAACGTCCACAGGGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTTTCAAACAGAGGAAACATTGGGTACAACGTCCACAGGGTGAA  300

seq1  GGCAGAGGGGAAGGAGGAAGAGGAGGAGAAGGAAGAGGAGGAGGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGGAAGGAGGAAGAGGAGGAGAAGGAAGAGGAGGAGGAGGAGG  350

seq1  AGGATC  356
      ||||||
seq2  AGGATC  356

seq1: chr6_111965316_111965449
seq2: B6Ng01-135I08.g_470_571 (reverse)

seq1  TATATATATATATATATATATATATATGGTCACAAATATATATATACATA  50
        |||||||||||||||||||||||||        |||||||||||  ||
seq2  --TATATATATATATATATATATATAT--------ATATATATATATCTA  40

seq1  TATATAGTTTTACATTTATCTATATGTATATATATGTGTATATATGTGTA  100
      ||||||          ||||||||| ||||||||    ||||||    ||
seq2  TATATA----------TATCTATATCTATATATA----TATATA----TA  72

seq1  TATATATGTATATACATGTATATATATATATGTG  134
      ||||||| ||||||    ||||||||||||||||
seq2  TATATATATATATA----TATATATATATATGTG  102