BAC Information

Click to search

BAC

Clone NameB6Ng01-135M22
Chromosome2 (Build37)
Map Location 52,842,908 - 52,957,320
singlet/doubletdoublet
Overlap geneFmnl2
Upstream geneTnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
Downstream genePrpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135M22.bB6Ng01-135M22.g
ACCDH935753DH935754
length1,099844
definitionDH935753|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M22, 5' end.DH935754|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,956,204 - 52,957,320)(52,842,908 - 52,843,751)
sequence
gaattcagtgggtgggaccgtgagggagggacaaaggctggaatgtaaat
aaataattaattttttaaaattaccatgtctaatggaacaaaaaagctct
ataagggattttatcatcaggattttaaaggagctgaaactaagattcac
ataaatctgagatccaagaaatgagtctcccactgaagacctagtgtgtt
tcaggccttacagtcactgcagatctaatgaagatgtgactgagcagcct
tagcaaaggcttcgcatgcaagaactgtcaggatgcgtgctctggaggca
agagctccgcagaaggaacgcctgggccggcaagtttcctaggacaactg
aactcagtcaaggacaaggacagggctgcactggaaaggaatggccaagg
aagcctcatgaagaactctgtcctgagcccagaatgaagacttaggagct
gaaattcagaaacgccccaggtaggggtcaggcaggcaggaaggaagcca
aagggagaagagccatcaacaccatctccagctaggaagccaatggtcca
gtcagcaaagccaagcactttagtctgtgagcatgtggtctagagagggc
actagagcgaaaggccaaagttccatccagctgaggcctctatgcaggtc
accttggtggctatgggaattcacactaagtcgtgacttccttttgtcaa
ccatgtgactttccctcttatttgttaaattatcagcatttctgtccttt
aatcaaatgagtgaaacttgaaagggctccagaaagggagcattcacata
aagaaaaacactctagaatagatgactaacctcgtttgcctgagctcttt
actgtgtccacttgactgtggcgtgtgttttggaggaaaggggcctaaac
ttgagttttcattgttgaaagggtgccagagactcaccataaatctatgt
atatcttcatctgaatgttcatcagcttctcaaacgctgctttctcgcag
actgaaacacacgttgtatcatgcatagaaattacaaacagaagcatccc
aatttgctacagaacactgttagtactggacgatgtttctctaatatac
gaattccaggccatcctgggctacagagtaaaaacctgtgtcaggaaaca
gaacaaagtatattccctcctctttgcccaagactgcctttgttggattt
taagaggcaatgcgcttcagcatataggttgtggattcaaagtcttttaa
atttgaattctagcttttacttagtagcctcatgtcggccattaagatta
acttaaaaatcatgtcttcttttcaaaatgagaacagtgctgcgtgtggt
gaggtatatctgcaaagttgtcctccactgaggcagagggctctctagtc
tgtctctagacagactggactcacctgggctctctcaaagcaagacaaaa
tcatgaaaaataaggatgctcacctgacttaagcccctaagatagtttgt
ggcattctgacggtgttggctggtagtgccaccgtggcttccaccgctgc
tcctgatgctgttccactcacaccgagccaccgaacatcagcgaaaccaa
ggtcattcattggtgcatcatcaagataaagtctcagtattcccagccct
ttaaaagtcctgtattggggtttctattttatgatttttttaaaaggaat
atctgggtgggtactggttcactggaggcaggaagaaatctcttcttcgt
tagaaagttcttttcatttacaatgcaaagtttttggtctgcctatatca
gctctactgtttgtatggagtaggttattatgtctgttagctatactgta
tgtagggggctgctaagattgtttttatagtttaagtgtttctttgtgtg
catatgtgtgtgtttccacccattccctgccatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52956204_52957320
seq2: B6Ng01-135M22.b_49_1147 (reverse)

seq1  GTATATAAGAGAAAACAATCGT-CAGTACT-ACAGTG-TCTGTAGCAAAT  47
      |||||| |||||||   ||||| ||||||| |||||| ||||||||||| 
seq2  GTATATTAGAGAAA--CATCGTCCAGTACTAACAGTGTTCTGTAGCAAA-  47

seq1  TTTGGGATGCTTCTGTTTGTAATGTCTTATGCATGATAACCACGTGTGTT  97
       |||||||||||||||||||||| || |||||||||| || |||||||||
seq2  -TTGGGATGCTTCTGTTTGTAATTTC-TATGCATGAT-ACAACGTGTGTT  94

seq1  TCAGGTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCA  147
      ||| |||||| ||| ||||||||| |||||||||||||| ||||| ||||
seq2  TCA-GTCTGC-GAG-AAAGCAGCG-TTTGAGAAGCTGAT-GAACA-TTCA  138

seq1  GGAATGAAGATAATAACATAGATTTTATGGTGAGTTCTCTTGGCACCCCT  197
      |  |||||||||   ||||||| ||||||||||| |||| ||||| ||||
seq2  G--ATGAAGATA--TACATAGA-TTTATGGTGAG-TCTC-TGGCA-CCCT  180

seq1  TTCAACAATGAAAACTCAAGTTTAGGCCCCCTTTCCTCCAAAACACACGC  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCAACAATGAAAACTCAAGTTTAGG-CCCCTTTCCTCCAAAACACACGC  229

seq1  CACAGTCAAGTGGACACAGTAAAGAGCTCAGGCAAACGAGGTTAGTCATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCAAGTGGACACAGTAAAGAGCTCAGGCAAACGAGGTTAGTCATC  279

seq1  TATTCTAGAGTGTTTTTCTTTATGTGAATGCTCCCTTTCTGGAGCCCTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGAGTGTTTTTCTTTATGTGAATGCTCCCTTTCTGGAGCCCTTT  329

seq1  CAAGTTTCACTCATTTGATTAAAGGACAGAAATGCTGATAATTTAACAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCACTCATTTGATTAAAGGACAGAAATGCTGATAATTTAACAAA  379

seq1  TAAGAGGGAAAGTCACATGGTTGACAAAAGGAAGTCACGACTTAGTGTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGAAAGTCACATGGTTGACAAAAGGAAGTCACGACTTAGTGTGA  429

seq1  ATTCCCATAGCCACCAAGGTGACCTGCATAGAGGCCTCAGCTGGATGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATAGCCACCAAGGTGACCTGCATAGAGGCCTCAGCTGGATGGAA  479

seq1  CTTTGGCCTTTCGCTCTAGTGCCCTCTCTAGACCACATGCTCACAGACTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCTTTCGCTCTAGTGCCCTCTCTAGACCACATGCTCACAGACTA  529

seq1  AAGTGCTTGGCTTTGCTGACTGGACCATTGGCTTCCTAGCTGGAGATGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTGGCTTTGCTGACTGGACCATTGGCTTCCTAGCTGGAGATGGT  579

seq1  GTTGATGGCTCTTCTCCCTTTGGCTTCCTTCCTGCCTGCCTGACCCCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGCTCTTCTCCCTTTGGCTTCCTTCCTGCCTGCCTGACCCCTAC  629

seq1  CTGGGGCGTTTCTGAATTTCAGCTCCTAAGTCTTCATTCTGGGCTCAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCGTTTCTGAATTTCAGCTCCTAAGTCTTCATTCTGGGCTCAGGA  679

seq1  CAGAGTTCTTCATGAGGCTTCCTTGGCCATTCCTTTCCAGTGCAGCCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTTCATGAGGCTTCCTTGGCCATTCCTTTCCAGTGCAGCCCTG  729

seq1  TCCTTGTCCTTGACTGAGTTCAGTTGTCCTAGGAAACTTGCCGGCCCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCTTGACTGAGTTCAGTTGTCCTAGGAAACTTGCCGGCCCAGG  779

seq1  CGTTCCTTCTGCGGAGCTCTTGCCTCCAGAGCACGCATCCTGACAGTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTTCTGCGGAGCTCTTGCCTCCAGAGCACGCATCCTGACAGTTCT  829

seq1  TGCATGCGAAGCCTTTGCTAAGGCTGCTCAGTCACATCTTCATTAGATCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGAAGCCTTTGCTAAGGCTGCTCAGTCACATCTTCATTAGATCT  879

seq1  GCAGTGACTGTAAGGCCTGAAACACACTAGGTCTTCAGTGGGAGACTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACTGTAAGGCCTGAAACACACTAGGTCTTCAGTGGGAGACTCAT  929

seq1  TTCTTGGATCTCAGATTTATGTGAATCTTAGTTTCAGCTCCTTTAAAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATCTCAGATTTATGTGAATCTTAGTTTCAGCTCCTTTAAAATC  979

seq1  CTGATGATAAAATCCCTTATAGAGCTTTTTTGTTCCATTAGACATGGTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATAAAATCCCTTATAGAGCTTTTTTGTTCCATTAGACATGGTAA  1029

seq1  TTTTAAAAAATTAATTATTTATTTACATTCCAGCCTTTGTCCCTCCCTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATTAATTATTTATTTACATTCCAGCCTTTGTCCCTCCCTCA  1079

seq1  CGGTCCCACCCACTGAATTC  1117
      ||||||||||||||||||||
seq2  CGGTCCCACCCACTGAATTC  1099

seq1: chr2_52842908_52843751
seq2: B6Ng01-135M22.g_68_911

seq1  GAATTCCAGGCCATCCTGGGCTACAGAGTAAAAACCTGTGTCAGGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCATCCTGGGCTACAGAGTAAAAACCTGTGTCAGGAAACA  50

seq1  GAACAAAGTATATTCCCTCCTCTTTGCCCAAGACTGCCTTTGTTGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTATATTCCCTCCTCTTTGCCCAAGACTGCCTTTGTTGGATTT  100

seq1  TAAGAGGCAATGCGCTTCAGCATATAGGTTGTGGATTCAAAGTCTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCAATGCGCTTCAGCATATAGGTTGTGGATTCAAAGTCTTTTAA  150

seq1  ATTTGAATTCTAGCTTTTACTTAGTAGCCTCATGTCGGCCATTAAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTCTAGCTTTTACTTAGTAGCCTCATGTCGGCCATTAAGATTA  200

seq1  ACTTAAAAATCATGTCTTCTTTTCAAAATGAGAACAGTGCTGCGTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAATCATGTCTTCTTTTCAAAATGAGAACAGTGCTGCGTGTGGT  250

seq1  GAGGTATATCTGCAAAGTTGTCCTCCACTGAGGCAGAGGGCTCTCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATCTGCAAAGTTGTCCTCCACTGAGGCAGAGGGCTCTCTAGTC  300

seq1  TGTCTCTAGACAGACTGGACTCACCTGGGCTCTCTCAAAGCAAGACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAGACAGACTGGACTCACCTGGGCTCTCTCAAAGCAAGACAAAA  350

seq1  TCATGAAAAATAAGGATGCTCACCTGACTTAAGCCCCTAAGATAGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAAATAAGGATGCTCACCTGACTTAAGCCCCTAAGATAGTTTGT  400

seq1  GGCATTCTGACGGTGTTGGCTGGTAGTGCCACCGTGGCTTCCACCGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTGACGGTGTTGGCTGGTAGTGCCACCGTGGCTTCCACCGCTGC  450

seq1  TCCTGATGCTGTTCCACTCACACCGAGCCACCGAACATCAGCGAAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCTGTTCCACTCACACCGAGCCACCGAACATCAGCGAAACCAA  500

seq1  GGTCATTCATTGGTGCATCATCAAGATAAAGTCTCAGTATTCCCAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCATTGGTGCATCATCAAGATAAAGTCTCAGTATTCCCAGCCCT  550

seq1  TTAAAAGTCCTGTATTGGGGTTTCTATTTTATGATTTTTTTAAAAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCCTGTATTGGGGTTTCTATTTTATGATTTTTTTAAAAGGAAT  600

seq1  ATCTGGGTGGGTACTGGTTCACTGGAGGCAGGAAGAAATCTCTTCTTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTGGGTACTGGTTCACTGGAGGCAGGAAGAAATCTCTTCTTCGT  650

seq1  TAGAAAGTTCTTTTCATTTACAATGCAAAGTTTTTGGTCTGCCTATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTCTTTTCATTTACAATGCAAAGTTTTTGGTCTGCCTATATCA  700

seq1  GCTCTACTGTTTGTATGGAGTAGGTTATTATGTCTGTTAGCTATACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACTGTTTGTATGGAGTAGGTTATTATGTCTGTTAGCTATACTGTA  750

seq1  TGTAGGGGGCTGCTAAGATTGTTTTTATAGTTTAAGTGTTTCTTTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGGCTGCTAAGATTGTTTTTATAGTTTAAGTGTTTCTTTGTGTG  800

seq1  CATATGTGTGTGTTTCCACCCATTCCCTGCCATGTGTGTGTGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTGTGTTTCCACCCATTCCCTGCCATGTGTGTGTGTG  844