BAC Information

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BAC

Clone NameB6Ng01-135P06
Chromosome2 (Build37)
Map Location 73,868,919 - 74,052,314
singlet/doubletdoublet
Overlap geneLOC100040172
Upstream geneGtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P06.bB6Ng01-135P06.g
ACCDH935862DH935863
length1,1581,023
definitionDH935862|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P06, 5' end.DH935863|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,868,919 - 73,870,104)(74,051,277 - 74,052,314)
sequence
gaattctttccctctagacacgtcctagcaatgtttggaatcaaggacga
aggctgctagaagctataccatttcaacacatcaggtaattccctaggcg
gccatcccaaacatgtgacatcatttattgtagctgattggccagaagat
gcccaacctgacttcattaactttaatgatctggagatcacagagaaacc
acaggacacttagtaagtctgttgcttctgcgtcttacccaaggtagaac
atttccaaacaaagataactccttctccttaaacaaaacaaaatgaaaca
aaacaacaacaacaacaacaacaacaacaacagtaaaacccatgttggac
ttatagtaaaagaatagtattttcttctaacttacattcttatgttcaat
ttaatctggccacaattcactacagtttctgagatacatccttaaattag
aatgacaagctgggtggaggtggcacacgcctttaaccccagtactccag
aggcagaggcaactggatctctgagttaaaggccagcctggtctacagag
tgagttacaagataactagggctacacaggaaaaccctgtttcagaaaac
aaaacaaaacaaaacaaaacaaaacaaaacaagaccggacaagtaaaaaa
atttaggatgacaagatataactttaacttgtctaacacagaatcagatt
tcatcacttactagaggccagacttaaccttaactaaaatgatatttatc
tttgttgtctacttttatgggagttacttgaaaggttaagatgaagccac
agctatccatgtgcagtatattagttagcctctcatcgtaaaattattcc
tggctcaaaaagtaatgaagatgatgatatgacctttttcctttaagttc
actatgtgtctctgagatagactttcccctttcagctccatgtgtaggac
actgaatagcacgccagtatttctactgttaaggatggatggattactgg
cttcagtaaatcttttgaaggttttctactttgatgggatggtatatact
caagttattcttttttaagtctgagattctgagttgtatgttctttcaga
gatggggttcactgaaattcgttacgatgtttgctcatgtcagtagcatg
tcattggt
gaattctcagaaagaaaagaaagaaaactgaagaaagagtttaaagagac
cgatttatatgtaaaaagatcaaaaaagatgaggtaatttttttaaaaag
gcccatgctcttgacattagttcctggtctctgcaaaattcattttattc
ttataatgaccttctctttttataaagaaaatacttccccccccctttat
tgaccaaactgtaatgagaaaataagaagtttaatgccagtgggttattg
ttacctccccgccccctgaaaagcctgggaaagaattggctccaattaat
gtagaagccactctattcctattaaaatataatgcggttaataaagtgtt
agctggaaataaaaatgtaagtatagtgaaatgcaaatgtaggtgcaaac
accgagctattacatccgcccatgttgacttctgtagtggagaaaaaata
tccatgatgctttcagcgaatggaatagtatgcgaatgtactggaatgtc
gtcttcaggtctggaagcttgtgatttcagactttaattcctgcacacaa
actgactttaaaaagcaaaggtttgaaacagataaagcaacattttgcct
aaagttcattcatcaaagggccgcatattttgaaaagggtaaaagcacta
ctaaacccatcagggataagtaaaggctatatactatagattattttaat
cccccagctagatataaaagggataattacatatttgtggttgaagccat
gtggtggaaaaatcaatacaacttttttgtatgacacttcattagtgtga
aaaattttaaaagctgagaagaactgccttgcaattaatgcctctgctac
ttcagctccagtatggctttgtattatatctagtttatttgaaatagtgg
ctgcactatagagtaatggaaatcattgattatgcgcttgtatttgaaag
cctggcgagtcatacaggcccggcacagttagttagcttactatgagcac
tattgctgtagtaggttacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73868919_73870104
seq2: B6Ng01-135P06.b_44_1201

seq1  GAATTCTTTCCCTCTAGACACGTCCTAGCAATGTTTGGAATCAAGGACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTCTAGACACGTCCTAGCAATGTTTGGAATCAAGGACGA  50

seq1  AGGCTGCTAGAAGCTATACCATTTCAACACATCAGGTAATTCCCTAGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTAGAAGCTATACCATTTCAACACATCAGGTAATTCCCTAGGCG  100

seq1  GCCATCCCAAACATGTGACATCATTTATTGTAGCTGATTGGCCAGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCAAACATGTGACATCATTTATTGTAGCTGATTGGCCAGAAGAT  150

seq1  GCCCAACCTGACTTCATTAACTTTAATGATCTGGAGATCACAGAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCTGACTTCATTAACTTTAATGATCTGGAGATCACAGAGAAACC  200

seq1  ACAGGACACTTAGTAAGTCTGTTGCTTCTGCGTCTTACCCAAGGTAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACACTTAGTAAGTCTGTTGCTTCTGCGTCTTACCCAAGGTAGAAC  250

seq1  ATTTCCAAACAAAGATAACTCCTTCTCCTTAAACAAAACAAAATGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAACAAAGATAACTCCTTCTCCTTAAACAAAACAAAATGAAACA  300

seq1  AAACAACAACAACAACAACAACAACAACAACAGTAAAACCCATGTTGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACAACAACAACAACAACAACAACAGTAAAACCCATGTTGGAC  350

seq1  TTATAGTAAAAGAATAGTATTTTCTTCTAACTTACATTCTTATGTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAAAAGAATAGTATTTTCTTCTAACTTACATTCTTATGTTCAAT  400

seq1  TTAATCTGGCCACAATTCACTACAGTTTCTGAGATACATCCTTAAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGGCCACAATTCACTACAGTTTCTGAGATACATCCTTAAATTAG  450

seq1  AATGACAAGCTGGGTGGAGGTGGCACACGCCTTTAACCCCAGTACTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAGCTGGGTGGAGGTGGCACACGCCTTTAACCCCAGTACTCCAG  500

seq1  AGGCAGAGGCAACTGGATCTCTGAGTTAAAGGCCAGCCTGGTCTACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAACTGGATCTCTGAGTTAAAGGCCAGCCTGGTCTACAGAG  550

seq1  TGAGTTACAAGATAACTAGGGCTACACAGGAAAACCCTGTTTCAGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAAGATAACTAGGGCTACACAGGAAAACCCTGTTTCAGAAAAC  600

seq1  AAAACAAAACAAAACAAAACAAAACAAAACAAGACCGGACAAGTAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAACAAAACAAAACAAGACCGGACAAGTAAAAAA  650

seq1  ATTTAGGATGACAAGATATAACTTTAACTTGTCTAACACAGAATCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGATGACAAGATATAACTTTAACTTGTCTAACACAGAATCAGATT  700

seq1  TCATCACTTACTAGAGGCCAGACTTAACCTTAACTAAAATGATATTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTACTAGAGGCCAGACTTAACCTTAACTAAAATGATATTTATC  750

seq1  TTTGTTGTCTACTTTTATGGGAGTTACTTGAAAGGTTAAGATGAAGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTCTACTTTTATGGGAGTTACTTGAAAGGTTAAGATGAAGCCAC  800

seq1  AGCTATCCATGTGCAGTATATTAGGTTAGCCTCTCATCGTAAAATTATTC  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTATCCATGTGCAGTATATTA-GTTAGCCTCTCATCGTAAAATTATTC  849

seq1  CTGGCTCAAAAAGTAATGAAGATGATGATATGACCTTTTTCCTTTAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCAAAAAGTAATGAAGATGATGATATGACCTTTTTCCTTTAAGTT  899

seq1  CCACTATGTGTCTTCTGAGATAAGACTTTCCCC-TTCAGCTCCATGTGTA  949
       ||||||||||| |||||||| ||||||||||| ||||||||||||||| 
seq2  -CACTATGTGTC-TCTGAGAT-AGACTTTCCCCTTTCAGCTCCATGTGT-  945

seq1  AGGACACTGAATAGCACGCCAGTATTTCTACTGTTAAAGAATGGATGGAT  999
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  AGGACACTGAATAGCACGCCAGTATTTCTACTGTT-AAGGATGGATGGAT  994

seq1  TACTGGCTTCAAGGTAAAATCTTTTGAAGGGTTTTCTTACTTTGAATGGG  1049
      |||||||||||  || |||||||||||| ||||||| ||||||| |||||
seq2  TACTGGCTTCA--GT-AAATCTTTTGAA-GGTTTTC-TACTTTG-ATGGG  1038

seq1  ATTGGTAATATACTCAAGTTATCCTTTTTTAGGTCTGAAGATTTCTTGAG  1099
      | |||| ||||||||||||||| |||||||| ||||| |||||   ||||
seq2  A-TGGT-ATATACTCAAGTTATTCTTTTTTAAGTCTG-AGATT--CTGAG  1083

seq1  TTTGGTATGTCCTTTCAGAGATTGGGGTTCAACTGAAAAATCTTCGTTTA  1149
      ||  |||||| |||||||||| |||||||| |||||||    |||| |||
seq2  TT--GTATGTTCTTTCAGAGA-TGGGGTTC-ACTGAAA----TTCG-TTA  1124

seq1  CAGATGTTTTGCCTCATGTCAGTAGCATGTCAATGGT  1186
      | |||||||   |||||||||||||||||||| ||||
seq2  C-GATGTTT--GCTCATGTCAGTAGCATGTCATTGGT  1158

seq1: chr2_74051277_74052314
seq2: B6Ng01-135P06.g_69_1091 (reverse)

seq1  ACATGTTAACCTACTTACAGCAATTAGTGCTTCATTAGTAAGGCTAACTA  50
      ||||| |||||||| |||||||| |||||| ||| |||||| ||||||||
seq2  ACATG-TAACCTAC-TACAGCAA-TAGTGC-TCA-TAGTAA-GCTAACTA  44

seq1  ACTGTTGCCGGGCCCTGTAATGACTCGCCAGGCTTTCCAGATACAAGCGC  100
      |||| ||||||| ||||| ||||||||||||||||| || ||||||||||
seq2  ACTG-TGCCGGG-CCTGT-ATGACTCGCCAGGCTTT-CAAATACAAGCGC  90

seq1  ATAATCAATGTTTTCCAATTACTTCTATAGTGCAGCCACTATTTCAAATA  150
      |||||||||| ||||| ||||| |||||||||||||||||||||||||||
seq2  ATAATCAATGATTTCC-ATTAC-TCTATAGTGCAGCCACTATTTCAAATA  138

seq1  AACTAGATAATAATACAAAGCCATTACTGGAGCTGAAGTAGCAGAGGCAT  200
      |||||||| |||||||||||||| ||||||||||||||||||||||||| 
seq2  AACTAGAT-ATAATACAAAGCCA-TACTGGAGCTGAAGTAGCAGAGGCA-  185

seq1  TTAATTGCAAGGCAGTTCTTCTCAGCTTTTAAAATTTTTCACACTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCAAGGCAGTTCTTCTCAGCTTTTAAAATTTTTCACACTAATGA  235

seq1  AGTGTCATACAAAAAAGTTGTATTGATTTTTCCACCACATGGCTTCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATACAAAAAAGTTGTATTGATTTTTCCACCACATGGCTTCAACC  285

seq1  ACAAATATGTAATTATCCCTTTTATATCTAGCTGGGGGATTAAAATAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGTAATTATCCCTTTTATATCTAGCTGGGGGATTAAAATAATC  335

seq1  TATAGTATATAGCCTTTACTTATCCCTGATGGGTTTAGTAGTGCTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATATAGCCTTTACTTATCCCTGATGGGTTTAGTAGTGCTTTTAC  385

seq1  CCTTTTCAAAATATGCGGCCCTTTGATGAATGAACTTTAGGCAAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCAAAATATGCGGCCCTTTGATGAATGAACTTTAGGCAAAATGTT  435

seq1  GCTTTATCTGTTTCAAACCTTTGCTTTTTAAAGTCAGTTTGTGTGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCTGTTTCAAACCTTTGCTTTTTAAAGTCAGTTTGTGTGCAGGA  485

seq1  ATTAAAGTCTGAAATCACAAGCTTCCAGACCTGAAGACGACATTCCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTCTGAAATCACAAGCTTCCAGACCTGAAGACGACATTCCAGTA  535

seq1  CATTCGCATACTATTCCATTCGCTGAAAGCATCATGGATATTTTTTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCATACTATTCCATTCGCTGAAAGCATCATGGATATTTTTTCTCC  585

seq1  ACTACAGAAGTCAACATGGGCGGATGTAATAGCTCGGTGTTTGCACCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAAGTCAACATGGGCGGATGTAATAGCTCGGTGTTTGCACCTAC  635

seq1  ATTTGCATTTCACTATACTTACATTTTTATTTCCAGCTAACACTTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTCACTATACTTACATTTTTATTTCCAGCTAACACTTTATTA  685

seq1  ACCGCATTATATTTTAATAGGAATAGAGTGGCTTCTACATTAATTGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCATTATATTTTAATAGGAATAGAGTGGCTTCTACATTAATTGGAGC  735

seq1  CAATTCTTTCCCAGGCTTTTCAGGGGGCGGGGAGGTAACAATAACCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTTCCCAGGCTTTTCAGGGGGCGGGGAGGTAACAATAACCCACT  785

seq1  GGCATTAAACTTCTTATTTTCTCATTACAGTTTGGTCAATAAAGGGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAAACTTCTTATTTTCTCATTACAGTTTGGTCAATAAAGGGGGGG  835

seq1  GGAAGTATTTTCTTTATAAAAAGAGAAGGTCATTATAAGAATAAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATTTTCTTTATAAAAAGAGAAGGTCATTATAAGAATAAAATGAA  885

seq1  TTTTGCAGAGACCAGGAACTAATGTCAAGAGCATGGGCCTTTTTAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGAGACCAGGAACTAATGTCAAGAGCATGGGCCTTTTTAAAAAA  935

seq1  ATTACCTCATCTTTTTTGATCTTTTTACATATAAATCGGTCTCTTTAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCATCTTTTTTGATCTTTTTACATATAAATCGGTCTCTTTAAAC  985

seq1  TCTTTCTTCAGTTTTCTTTCTTTTCTTTCTGAGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCAGTTTTCTTTCTTTTCTTTCTGAGAATTC  1023