BAC Information

Click to search

BAC

Clone NameB6Ng01-135P07
Chromosome2 (Build37)
Map Location 154,615,462 - 154,757,967
singlet/doubletdoublet
Overlap geneRaly, Eif2s2
Upstream geneEG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P07.bB6Ng01-135P07.g
ACCDH935864DH935865
length1,0811,107
definitionDH935864|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P07, 5' end.DH935865|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,756,880 - 154,757,967)(154,615,462 - 154,616,581)
sequence
gaattcacttggagaaaaaaaatcctaaacatgaaacattcccatttgtt
tgcattttgtcgcaagtgtgggagggtgaaggatgtgactcttctcttgt
ttagaaataattctgtagccagagtcccaggctccaggctccactgtctt
cctggtttactctgctctccagggccatcagaagtcattcaaagcaacag
tcagtaggtgggcttttagaaggggaaattttgctatttgaaatagtttc
cttatgtcttatggcagctcgtcttgacatttgtatctagggcagcatct
gcaatgacatttggcttggtgtctatgttaagtcaattcaaacattaatt
agaaagcgccacccttggcgttactataataaaggatatggacaacattt
tgttcaaccctgtaacgtcactggctgctttaagcctgaccacagccagg
tcagacagcagctgactaatgctcatagctcaagaccaagaagataccag
gagaggaaagcaggaggtagaaaccagtcaggtaggaaagggacacagtc
atggtttgaataacacttggtctcccagttgctaccatagtttggaggag
ttatggaaccttttggaggtggggacttttgagggaagtgggtcactcag
ggtgggctttcagggtttacagcctcgacctatttcctgctcttgctttc
tctgcctcctgtgtgcccttgatgtgacttcttatctcccttctcgtgcc
aacatggcttctctaccattatggacatctaaagcctctggaactaaata
aagccttttcttcctcaggtaactgtcagagtttttttgcagcagcagca
cagcaacaaaacaaaacaaaaatcaattattatagaccccaaagaatcag
ctctggaaatgttcttcctagaggtcagtatagcaaaagagcactccagt
gcctacttcctgttactcttgtctagtctaggagctacacacagggatgt
gaataactgcagcaagctctggacaatctgatcagacagctggactggac
gctcatgccttcacctttctttcctgccgtg
gaattccaggaaagccaaggctaccccgagaaaccctgtcttgaaaaaac
aaacggacaaggaaacccaacaaagaatagatggtatatttgagcaaata
taggaagactgttacacagagagggaagtgaggagctggataaaaccaga
aaaagcagaggaggttggtaggggctggactgattgatggaagtgtttat
tgatcaccatagtaggtctggaaacacagtaatgtacaaaaaccagtaaa
gaattcctggtcttggcgctggggagatggtttagtgagtaagactgatt
gctcttcaaggctgagaacctgtttgaatcacccattcccgaactcaaga
ggcctggcctcgctgtgatgccagcagttggaaggcagaagcagggagga
ttaggagttcaagattattctcggctacagagcaagtacaaagctggccc
gggctacagagaccctgcctcaaactctgtcctaattcccaacaggtaat
gaaatcacaggtctgaagggaatggggaatacaaataagtacgtctccag
ctttctgggagatttgtgactatagctgacaatggtcctctttgctctca
gaagaccccctgatggtctggagaggcaaattggggatgtaagtgggaga
gacaggagactgaaaaactgattcaaatgggagatcctgacatgataaat
atttaggaggaagaaccaacacccagattaagtaaagaaaacatttcatc
ccatagggcaaaactacttaatcaggcttttttttttttcacctttgacg
agagaccccagacatcgaagcgtctccgcccaaccccaaggcttcccagc
gaatggtagcatttctaattcctagaagtgaataaccgctccattgcttc
tgggccctggcgcaccgcctccagctaacagagaagggctccatctctgg
cctcgccaatcaagcgcaacccctgcgccgcggttcttccttagatcttc
ctctttcggctccggccagggctacatcgactgtctgccggcggtgttac
aaggccaccttctgcaaccggggcaacctctagagcccgcttccgcttcg
gtaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154756880_154757967
seq2: B6Ng01-135P07.b_50_1130 (reverse)

seq1  CACGGCAGAAAAGAAGGGTGAA-GCATGAGCTGTCCAGTCCAGCTGGTCT  49
      |||||||| |||||| |||||| |||||||| ||||||||||||| ||||
seq2  CACGGCAGGAAAGAAAGGTGAAGGCATGAGC-GTCCAGTCCAGCT-GTCT  48

seq1  GATCAGA-TGTCCAGGAGCTTGCTTGCAGTTTATTCACATCCCTGTGTGT  98
      ||||||| |||||| |||||||| ||||| ||||||||||||||||||||
seq2  GATCAGATTGTCCA-GAGCTTGC-TGCAG-TTATTCACATCCCTGTGTGT  95

seq1  AGCTCCTAGACTAGGCCAAGAGGTAACAAGGAAGTAGGCACTGGAGTGCT  148
      ||||||||||||| | ||||| ||||| ||||||||||||||||||||||
seq2  AGCTCCTAGACTA-GACAAGA-GTAAC-AGGAAGTAGGCACTGGAGTGCT  142

seq1  CTTTTGCTATACCTGACCTCTAGGAAGAACATTTCCAGAGCTGATTCTTT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTATA-CTGACCTCTAGGAAGAACATTTCCAGAGCTGATTCTTT  191

seq1  GGGGTCTATAATAATTGATTTTTGTTTTGTTTTGTTGCTGTTGCTGCTGC  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGGTCTATAATAATTGATTTTTGTTTTGTTTTGTTGCTG-TGCTGCTGC  240

seq1  TGCAATAAAACTCTGACAGTTACCTGAGGAAGAAAAGGCTTTATTTAGTT  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAAACTCTGACAGTTACCTGAGGAAGAAAAGGCTTTATTTAGTT  290

seq1  CCAGAGGC-TTAGATGTCCATAATGGTAGAGAAGCCATGTTGGCACGAGA  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCTTTAGATGTCCATAATGGTAGAGAAGCCATGTTGGCACGAGA  340

seq1  AGGGAGATAAGAAGTCACATCAAGGGCACACAGGAGGCAGAGAAAGCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATAAGAAGTCACATCAAGGGCACACAGGAGGCAGAGAAAGCAAG  390

seq1  AGCAGGAAATAGGTCGAGGCTGTAAACCCTGAAAGCCCACCCTGAGTGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAATAGGTCGAGGCTGTAAACCCTGAAAGCCCACCCTGAGTGAC  440

seq1  CCACTTCCCTCAAAAGTCCCCACCTCCAAAAGGTTCCATAACTCCTCCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCCTCAAAAGTCCCCACCTCCAAAAGGTTCCATAACTCCTCCAA  490

seq1  ACTATGGTAGCAACTGGGAGACCAAGTGTTATTCAAACCATGACTGTGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTAGCAACTGGGAGACCAAGTGTTATTCAAACCATGACTGTGTC  540

seq1  CCTTTCCTACCTGACTGGTTTCTACCTCCTGCTTTCCTCTCCTGGTATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTACCTGACTGGTTTCTACCTCCTGCTTTCCTCTCCTGGTATCT  590

seq1  TCTTGGTCTTGAGCTATGAGCATTAGTCAGCTGCTGTCTGACCTGGCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCTTGAGCTATGAGCATTAGTCAGCTGCTGTCTGACCTGGCTGT  640

seq1  GGTCAGGCTTAAAGCAGCCAGTGACGTTACAGGGTTGAACAAAATGTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCTTAAAGCAGCCAGTGACGTTACAGGGTTGAACAAAATGTTGT  690

seq1  CCATATCCTTTATTATAGTAACGCCAAGGGTGGCGCTTTCTAATTAATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTTTATTATAGTAACGCCAAGGGTGGCGCTTTCTAATTAATGT  740

seq1  TTGAATTGACTTAACATAGACACCAAGCCAAATGTCATTGCAGATGCTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACTTAACATAGACACCAAGCCAAATGTCATTGCAGATGCTGC  790

seq1  CCTAGATACAAATGTCAAGACGAGCTGCCATAAGACATAAGGAAACTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATACAAATGTCAAGACGAGCTGCCATAAGACATAAGGAAACTATT  840

seq1  TCAAATAGCAAAATTTCCCCTTCTAAAAGCCCACCTACTGACTGTTGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCAAAATTTCCCCTTCTAAAAGCCCACCTACTGACTGTTGCTT  890

seq1  TGAATGACTTCTGATGGCCCTGGAGAGCAGAGTAAACCAGGAAGACAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACTTCTGATGGCCCTGGAGAGCAGAGTAAACCAGGAAGACAGTG  940

seq1  GAGCCTGGAGCCTGGGACTCTGGCTACAGAATTATTTCTAAACAAGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAGCCTGGGACTCTGGCTACAGAATTATTTCTAAACAAGAGAA  990

seq1  GAGTCACATCCTTCACCCTCCCACACTTGCGACAAAATGCAAACAAATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACATCCTTCACCCTCCCACACTTGCGACAAAATGCAAACAAATGG  1040

seq1  GAATGTTTCATGTTTAGGATTTTTTTTCTCCAAGTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCATGTTTAGGATTTTTTTTCTCCAAGTGAATTC  1081

seq1: chr2_154615462_154616581
seq2: B6Ng01-135P07.g_70_1176

seq1  GAATTCCAGGAAAGCCAAGGCTACCCCGAGAAACCCTGTCTTGAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAGCCAAGGCTACCCCGAGAAACCCTGTCTTGAAAAAAC  50

seq1  AAACGGACAAGGAAACCCAACAAAGAATAGATGGTATATTTGAGCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGACAAGGAAACCCAACAAAGAATAGATGGTATATTTGAGCAAATA  100

seq1  TAGGAAGACTGTTACACAGAGAGGGAAGTGAGGAGCTGGATAAAACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACTGTTACACAGAGAGGGAAGTGAGGAGCTGGATAAAACCAGA  150

seq1  AAAAGCAGAGGAGGTTGGTAGGGGCTGGACTGATTGATGGAAGTGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAGGAGGTTGGTAGGGGCTGGACTGATTGATGGAAGTGTTTAT  200

seq1  TGATCACCATAGTAGGTCTGGAAACACAGTAATGTACAAAAACCAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCATAGTAGGTCTGGAAACACAGTAATGTACAAAAACCAGTAAA  250

seq1  GAATTCCTGGTCTTGGCGCTGGGGAGATGGTTTAGTGAGTAAGACTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCTTGGCGCTGGGGAGATGGTTTAGTGAGTAAGACTGATT  300

seq1  GCTCTTCAAGGCTGAGAACCTGTTTGAATCACCCATTCCCGAACTCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCAAGGCTGAGAACCTGTTTGAATCACCCATTCCCGAACTCAAGA  350

seq1  GGCCTGGCCTCGCTGTGATGCCAGCAGTTGGAAGGCAGAAGCAGGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCCTCGCTGTGATGCCAGCAGTTGGAAGGCAGAAGCAGGGAGGA  400

seq1  TTAGGAGTTCAAGATTATTCTCGGCTACAGAGCAAGTACAAAGCTGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTTCAAGATTATTCTCGGCTACAGAGCAAGTACAAAGCTGGCCC  450

seq1  GGGCTACAGAGACCCTGCCTCAAACTCTGTCCTAATTCCCAACAGGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACAGAGACCCTGCCTCAAACTCTGTCCTAATTCCCAACAGGTAAT  500

seq1  GAAATCACAGGTCTGAAGGGAATGGGGAATACAAATAAGTACGTCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACAGGTCTGAAGGGAATGGGGAATACAAATAAGTACGTCTCCAG  550

seq1  CTTTCTGGGAGATTTGTGACTATAGCTGACAATGGTCCTCTTTGCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGGAGATTTGTGACTATAGCTGACAATGGTCCTCTTTGCTCTCA  600

seq1  GAAGACCCCCTGATGGTCTGGAGAGGCAAATTGGGGATGTAAGTGGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCCCTGATGGTCTGGAGAGGCAAATTGGGGATGTAAGTGGGAGA  650

seq1  GACAGGAGACTGAAAAACTGATTCAAATGGGAGATCCTGACATGATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGACTGAAAAACTGATTCAAATGGGAGATCCTGACATGATAAAT  700

seq1  ATTTAGGAGGAAGAACCAACACCCAGATTAAGT-AAGAAAACATTTCATC  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTAGGAGGAAGAACCAACACCCAGATTAAGTAAAGAAAACATTTCATC  750

seq1  CCATAAGGGCAAAACTACTTAATCAGGCTTTTTTTTTTTCCACCTTTGAC  799
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAT-AGGGCAAAACTACTTAATCAGGCTTTTTTTTTTTTCACCTTTGAC  799

seq1  GAGAGACCCCAGACATCGAAGCGTCTCCGCCCAACCCCAAGCCTTCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGAGACCCCAGACATCGAAGCGTCTCCGCCCAACCCCAAGGCTTCCCAG  849

seq1  CGAATGGTAGCA-TTCTAATTCCTAGAAAGTGAAATAACCGCTCCAATTG  898
      |||||||||||| ||||||||||||| ||||| |||||||||||| ||||
seq2  CGAATGGTAGCATTTCTAATTCCTAG-AAGTG-AATAACCGCTCC-ATTG  896

seq1  CTTCTGGCCCCTGCCGCACCGCCTCCAGCTAACAGAG-AGGGCTCCATCT  947
      ||||||| ||||| ||||||||||||||||||||||| ||||||||||||
seq2  CTTCTGGGCCCTGGCGCACCGCCTCCAGCTAACAGAGAAGGGCTCCATCT  946

seq1  CCAGGCCTCGCCCAATCAAGCGCCACCCCCGCGCCGCGCTCCTCCCTTAG  997
       | ||||||| |||||||||||| ||||| |||||||| | || ||||| 
seq2  -CTGGCCTCG-CCAATCAAGCGCAACCCCTGCGCCGCGGTTCTTCCTTA-  993

seq1  GATCTTCCTCCTTCCGGCTCCCGCCCAGGGTCTACCTCCGACTGTCCTGC  1047
      ||||||||| ||| ||||| ||| |||||| |||| | ||||||| ||||
seq2  GATCTTCCT-CTTTCGGCT-CCGGCCAGGG-CTACAT-CGACTGT-CTGC  1038

seq1  CCGCGGTGTTACCAAGGCCCACCTCCTGCAGACCGGCGGCAACCTCT-TA  1096
      | ||||||||| ||||| |||||| ||||| ||||| ||||||||||  |
seq2  CGGCGGTGTTA-CAAGG-CCACCTTCTGCA-ACCGG-GGCAACCTCTAGA  1084

seq1  GCACCGCCTCCGCTTCCGTAGGCC  1120
      || |||| |||||||| |||||||
seq2  GC-CCGCTTCCGCTTCGGTAGGCC  1107