BAC Information

Click to search

BAC

Clone NameB6Ng01-136B22
Chromosome2 (Build37)
Map Location 119,453,413 - 119,600,267
singlet/doubletdoublet
Overlap geneNusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1
Upstream geneBub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5
Downstream geneTyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B22.bB6Ng01-136B22.g
ACCDH935980DH935981
length1,1191,073
definitionDH935980|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B22, 5' end.DH935981|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,453,413 - 119,454,524)(119,599,170 - 119,600,267)
sequence
gaattcctacctcccaggtgaatgggactgtgcaaactgaagagaagcca
ccagaactagcacagtctatctaccataactggcacacttttagtgagct
tccatttaccttccttcatgatgctagatgactggaaacatgctgtgttc
tgcaggctcctcagaagtagagatccatgtctgctgtgctccccactgta
cacctgatcctagcactcgggaagaaatgactagtactaagtataaatta
gatgcccatttaaggggctggagacagatgagggttggctaagggattaa
gagggcttgctgctgtgcagttcggatctcagtacccatgtgaaagccag
acatggtcccatgcaaacctgtaattgtagctctgaggagagtgaaaact
atctctggggcttgttggccactggtctaacctaaaaacaagatatccaa
gtttgggggctggagagatggctcagcggttaagggcactgactgttctt
ccagaggtcttgatttcaattcccagcaaccacatggtggctcacaacca
tcagtaatgggatacgatgccctcttctggtgtgtctgaagacagcaaca
gtgtactcataaaataaatcttaaataaaaaaaaaaaaaaagatctccaa
gttcatgagagatcctgccttaaaggaacaaagtggagaataatagagag
ggtcccctcccacctcccccacaatgccctcctctggcattcatgcaatc
ctacaaaaattgattgaataatatgagtgttcacatgggtggtcacatag
gtggactgtaataaagatggaagaaagagggaccagcctgaagtgtggag
ctttaaggtctcttccttaggttgctcctagcctggtgatgctcagtctt
gtgcttgtgtggtcatgttggagaaacgagggtgcttcttcactttgctt
ttgatcacactgacttttactccttggcttcttatcaacatggcacttct
ctttccaggcataaaggcttacagctagaatttcagtggggggagcagag
acacgaggttatgaggtttaacacaggttgtactacatagtgaacagcag
cgaaatcaaatataaattt
gaattcccattttcacagcctagcatggttcactccagagaatatctgta
tccttagtccatgctgggccactgacgccatacccatccactgagaccag
attcactttccatggctgtcctctgattagaaattaaacagctattacat
ccctgtttgctgtgtggtgccattgctctgtgcatgacctataattttta
ttagcttgaggttccaaggagagccatgactagctgtcacttgtttatct
tgcctttcccttgacaccttccctgtgtcttgattccttctgactctctg
tccctgcatcagcgagcagggtattctctacaggagctgttccacctgac
ccgtagccaggtgtcccagcagagagcactagcattgcaagtgttgtccc
agatcgtcggcagggtaagtgggctgctggcctggtcctaccaagccaca
ccccatccttcatcccttgatcttagccttttcctccttactgtgggtca
gactaggaatggggcaaatgtgcagtaacgggtcagcaaaggttctatcc
aagttctgcatcttgtacccaaggcccaggctggtgagtttggggaccgc
ctagtgggcagtgtcttgcgcctcctcttggatgctggtttcctcttcct
gctgcgcttctctctggatgacagggtggacagtgtcatcgcagcagctg
tccgggctcttcgtactctgctagtggctcctggagatgaggtatgtcag
ggtgacagggctctgctctgcgttctgggcataccctttgccaaggcttt
gaggcagactggagaatagggtggcaggtgtaagccccttctgaagacca
caagccttgcctccctgccgctgctgtgtgttggcgagggataattttgc
tctgtctgaccatgtcttctttctgtctcttcccacctctaccccatcct
ctggcaggagctctggaccgcaccttctctggtatcatggaagcttcggt
gttccctctgatgccagccagacgaataagaggatgagatgagaatgagg
actcgaaacagaaagtgaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119453413_119454524
seq2: B6Ng01-136B22.b_45_1163

seq1  GAATTCCTACCTCCCAGGTGAATGGGACTGTGCAAACTGAAGAGAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCTCCCAGGTGAATGGGACTGTGCAAACTGAAGAGAAGCCA  50

seq1  CCAGAACTAGCACAGTCTATCTACCATAACTGGCACACTTTTAGTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTAGCACAGTCTATCTACCATAACTGGCACACTTTTAGTGAGCT  100

seq1  TCCATTTACCTTCCTTCATGATGCTAGATGACTGGAAACATGCTGTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTACCTTCCTTCATGATGCTAGATGACTGGAAACATGCTGTGTTC  150

seq1  TGCAGGCTCCTCAGAAGTAGAGATCCATGTCTGCTGTGCTCCCCACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTCCTCAGAAGTAGAGATCCATGTCTGCTGTGCTCCCCACTGTA  200

seq1  CACCTGATCCTAGCACTCGGGAAGAAATGACTAGTACTAAGTATAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATCCTAGCACTCGGGAAGAAATGACTAGTACTAAGTATAAATTA  250

seq1  GATGCCCATTTAAGGGGCTGGAGACAGATGAGGGTTGGCTAAGGGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCATTTAAGGGGCTGGAGACAGATGAGGGTTGGCTAAGGGATTAA  300

seq1  GAGGGCTTGCTGCTGTGCAGTTCGGATCTCAGTACCCATGTGAAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTGCTGCTGTGCAGTTCGGATCTCAGTACCCATGTGAAAGCCAG  350

seq1  ACATGGTCCCATGCAAACCTGTAATTGTAGCTCTGAGGAGAGTGAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTCCCATGCAAACCTGTAATTGTAGCTCTGAGGAGAGTGAAAACT  400

seq1  ATCTCTGGGGCTTGTTGGCCACTGGTCTAACCTAAAAACAAGATATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGGGCTTGTTGGCCACTGGTCTAACCTAAAAACAAGATATCCAA  450

seq1  GTTTGGGGGCTGGAGAGATGGCTCAGCGGTTAAGGGCACTGACTGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGGCTGGAGAGATGGCTCAGCGGTTAAGGGCACTGACTGTTCTT  500

seq1  CCAGAGGTCTTGATTTCAATTCCCAGCAACCACATGGTGGCTCACAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTCTTGATTTCAATTCCCAGCAACCACATGGTGGCTCACAACCA  550

seq1  TCAGTAATGGGATACGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATGGGATACGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACA  600

seq1  GTGTACTCATAAAATAAATCTTAAATAAAAAAAAAAAAAAAGATCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTCATAAAATAAATCTTAAATAAAAAAAAAAAAAAAGATCTCCAA  650

seq1  GTTCATGAGAGATCCTGCCTTAAAGGAACAAAGTGGAGAATAATAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAGAGATCCTGCCTTAAAGGAACAAAGTGGAGAATAATAGAGAG  700

seq1  GGTCCCCTCCCACCTCCCCCACAATGCCCTCCTCTGGCATTCATGCAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTCCCACCTCCCCCACAATGCCCTCCTCTGGCATTCATGCAATC  750

seq1  CTACAAAAATTGATTGAATAATATGAGTGTTCACAT-GGTGGTCACATAG  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTACAAAAATTGATTGAATAATATGAGTGTTCACATGGGTGGTCACATAG  800

seq1  GTGGACTGTAATAAAGATGGAAGAAAGAGGGACCAGCCTGAAGTGTGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGTAATAAAGATGGAAGAAAGAGGGACCAGCCTGAAGTGTGGAG  850

seq1  CTTTAAGGTCTCTTCCTTAGTTTGCTCCTAGCCTGGTGATGCTCAGTC-T  898
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  CTTTAAGGTCTCTTCCTTAGGTTGCTCCTAGCCTGGTGATGCTCAGTCTT  900

seq1  GTGCTTGTGTGGTCATGTT-GAGAAACGA-GGTGCTTCCTCAC-TTGC-T  944
      ||||||||||||||||||| ||||||||| |||||||| |||| |||| |
seq2  GTGCTTGTGTGGTCATGTTGGAGAAACGAGGGTGCTTCTTCACTTTGCTT  950

seq1  TTGATCACACTGAC-TTTACT-CTTGGC-TCTTATTCACATGGCACTTCT  991
      |||||||||||||| |||||| |||||| ||||||  |||||||||||||
seq2  TTGATCACACTGACTTTTACTCCTTGGCTTCTTATCAACATGGCACTTCT  1000

seq1  CTTCCCAGGCATAAAGGCATACAGCTAGAATGTCAGTGGGGGAAGCAGAG  1041
      ||| |||||||||||||| |||||||||||| |||||||||| |||||||
seq2  CTTTCCAGGCATAAAGGCTTACAGCTAGAATTTCAGTGGGGGGAGCAGAG  1050

seq1  ACACGAGGGTATGAGGTTAAACACAGTTGGTACTACATAGTGAAACAGCA  1091
      |||||||| ||||||||| ||||||| | ||||||||||||| |||||||
seq2  ACACGAGGTTATGAGGTTTAACACAGGTTGTACTACATAGTG-AACAGCA  1099

seq1  GCAGAAATCAAATATAAATTT  1112
      || ||||||||||||||||||
seq2  GC-GAAATCAAATATAAATTT  1119

seq1: chr2_119599170_119600267
seq2: B6Ng01-136B22.g_64_1136 (reverse)

seq1  CTTCCTCAGGTGTCTTTCTCTTCACCTTTTCTGTTTCGAGTTCCTCATCT  50
                   ||   || ||||  ||||||||||||| |||||||  
seq2  -------------CT---TCCTCAC--TTTCTGTTTCGAG-TCCTCATTC  31

seq1  TCATCTTCATCCTCTTTATCGTCCTGGCTGGGCATCAGAGGGAACACCGA  100
      ||||| ||||||||||  |||| |||||| ||||||||||||||||||||
seq2  TCATC-TCATCCTCTTATTCGT-CTGGCT-GGCATCAGAGGGAACACCGA  78

seq1  AGC-TCCATGATACCAAGAGAAGGTGCGGTCCAGGAGCTCCTGCCAGAGG  149
      ||| ||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AGCTTCCATGATACC-AGAGAAGGTGCGGTCCA-GAGCTCCTGCCAGAGG  126

seq1  ATGGGGTAGAGGTGGGAAGAGACAGAAAGAAGACATGGTCCAGGACAGAG  199
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  ATGGGGTAGAGGTGGGAAGAGACAGAAAGAAGACATGGTC--AGACAGAG  174

seq1  CAAAATTATCCCTCGCCAACACACAGCAGCGGCAGGGAGGCAAGGCTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATCCCTCGCCAACACACAGCAGCGGCAGGGAGGCAAGGCTTGT  224

seq1  GGTCTTCAGAAGGGGCTTACACCTGCCACCCTATTCTCCAGTCTGCCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCAGAAGGGGCTTACACCTGCCACCCTATTCTCCAGTCTGCCTCA  274

seq1  AAGCCTTGGCAAAGGGTATGCCCAGAACGCAGAGCAGAGCCCTGTCACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGGCAAAGGGTATGCCCAGAACGCAGAGCAGAGCCCTGTCACCC  324

seq1  TGACATACCTCATCTCCAGGAGCCACTAGCAGAGTACGAAGAGCCCGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACCTCATCTCCAGGAGCCACTAGCAGAGTACGAAGAGCCCGGAC  374

seq1  AGCTGCTGCGATGACACTGTCCACCCTGTCATCCAGAGAGAAGCGCAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGCGATGACACTGTCCACCCTGTCATCCAGAGAGAAGCGCAGCA  424

seq1  GGAAGAGGAAACCAGCATCCAAGAGGAGGCGCAAGACACTGCCCACTAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAACCAGCATCCAAGAGGAGGCGCAAGACACTGCCCACTAGG  474

seq1  CGGTCCCCAAACTCACCAGCCTGGGCCTTGGGTACAAGATGCAGAACTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCCCAAACTCACCAGCCTGGGCCTTGGGTACAAGATGCAGAACTTG  524

seq1  GATAGAACCTTTGCTGACCCGTTACTGCACATTTGCCCCATTCCTAGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACCTTTGCTGACCCGTTACTGCACATTTGCCCCATTCCTAGTCT  574

seq1  GACCCACAGTAAGGAGGAAAAGGCTAAGATCAAGGGATGAAGGATGGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAGTAAGGAGGAAAAGGCTAAGATCAAGGGATGAAGGATGGGGT  624

seq1  GTGGCTTGGTAGGACCAGGCCAGCAGCCCACTTACCCTGCCGACGATCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGGTAGGACCAGGCCAGCAGCCCACTTACCCTGCCGACGATCTG  674

seq1  GGACAACACTTGCAATGCTAGTGCTCTCTGCTGGGACACCTGGCTACGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACACTTGCAATGCTAGTGCTCTCTGCTGGGACACCTGGCTACGGG  724

seq1  TCAGGTGGAACAGCTCCTGTAGAGAATACCCTGCTCGCTGATGCAGGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGAACAGCTCCTGTAGAGAATACCCTGCTCGCTGATGCAGGGAC  774

seq1  AGAGAGTCAGAAGGAATCAAGACACAGGGAAGGTGTCAAGGGAAAGGCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCAGAAGGAATCAAGACACAGGGAAGGTGTCAAGGGAAAGGCAA  824

seq1  GATAAACAAGTGACAGCTAGTCATGGCTCTCCTTGGAACCTCAAGCTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAAGTGACAGCTAGTCATGGCTCTCCTTGGAACCTCAAGCTAAT  874

seq1  AAAAATTATAGGTCATGCACAGAGCAATGGCACCACACAGCAAACAGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATAGGTCATGCACAGAGCAATGGCACCACACAGCAAACAGGGA  924

seq1  TGTAATAGCTGTTTAATTTCTAATCAGAGGACAGCCATGGAAAGTGAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGCTGTTTAATTTCTAATCAGAGGACAGCCATGGAAAGTGAATC  974

seq1  TGGTCTCAGTGGATGGGTATGGCGTCAGTGGCCCAGCATGGACTAAGGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAGTGGATGGGTATGGCGTCAGTGGCCCAGCATGGACTAAGGAT  1024

seq1  ACAGATATTCTCTGGAGTGAACCATGCTAGGCTGTGAAAATGGGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTCTCTGGAGTGAACCATGCTAGGCTGTGAAAATGGGAATTC  1073