BAC Information

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BAC

Clone NameB6Ng01-136N08
Chromosome2 (Build37)
Map Location 74,717,576 - 74,868,643
singlet/doubletdoublet
Overlap geneLOC667817
Upstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136N08.bB6Ng01-136N08.g
ACCDH936503DH936504
length1,0821,016
definitionDH936503|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N08, 5' end.DH936504|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,717,576 - 74,718,662)(74,867,622 - 74,868,643)
sequence
gaattccattttctcatttattatttggtcactcacccatttaatatata
tttaaatgtaggcagaagcacattggtggtttctcttctctaaaggtact
tagaacctttagagtgttaggaacaagcaaacccagcactgggaccgcac
aggcgagtattgctgagatgggcttaatgaaacctcagaggatcagctgg
actgtgggcaaacgcctcatttcctgtggatgttcccctcacaagtggag
cagagcttcctcgggcctcacaattatcacccacttgttctctaggtctc
aagttgggtttttctttttttttcccttgcattagtcaggttgaaggatt
catggtattaatcacgagtgaagttgttatttatcacctgctgggtgaga
aataataattttggcaggagtggggcagcaggccagaggtaccaaattaa
gtaaaacatctaaacaccagcaaggatcatttctctgattaatgaattgt
tacaaaggaaaagcactactcattatctgctctcaccaatacagaatggg
gcatgtaagaggaaacaggaccagcttgctcaggccagcttttgtttgtt
tcattatttttcccttctatagaactgtgctgcagtcacaccagcttttg
gttttctttgttaccaaagtacagaaatggaaaaataacttgtttaaata
ttacattagaaaatattaaaatgattattgaaacaatgattttttttttt
gagacaatgtcttagtgtatccttgggtggcctagactaggttggccttg
aactccaagaatccaggaggcagctttgtcactcttctttttttttttta
ttattattattaggtatttatttcatttacattccaatgctatcccaaaa
attccccacaccctcccaactcccactttcttggccctggcgttcccctg
tactggggcatataaagtcttcacgacaatggcttctcttcactgatggc
ttgaacaggccatcttctgatacatatgtagctaggagcggagcttctag
ggggtactggttagttctattgttgtttcacc
gaattcagatttcaagatgaataagaacatatggcttaacacaattgtgt
ggccaagtttctgtctgtaaaatacttgaaccaatgacgttataacccaa
aatgttaaattaaaatgccaagtgagtggtggaaaagaggggatggagcc
gggagctctagggagagtcttgcttctgtcatgtgatccactgagctgtg
ggccatgacaggtccacactaaatgatctctcagaataagcagagaatct
caatttgtgaatgggctattacaactttaaaatattagctcttgaaccat
aacttattattgaatgataacttagttaaaaaaaaaacccaagctgatca
aaaccaaagtgggtcaagacttatggatttcacttgtagaatgccatttt
gtaagcgctggttgagaaatcctcataacatctgatgaagctggatgaaa
aggctaaagggatgtaaggtttacagaaagatgtgtgtgaggacagacgt
gggaaattgaattcacagagctgtgctaagcgattcctttatcagacgta
cgccccagcatctgcttttattaatcctgtgtttgaagcagtgtttcata
atatctccgtgcttatataatcatcattgagatgcgacatcagaccctgg
tttcatgagtgactgtcagcatgttgggaaattgccttttgtggtgtatg
tcatgttcaaatgggcaccattttaaattttcattgagaaagccactctg
tagactaaaaaccattcagaggaagcaggtttggaaaggttactgcaaaa
tccatctcaacggcaaacagaagtgattttaaatgcctgttattttggaa
gcagttcaaagttgttctttcattgtaaatggcgttaaagtgctctgcag
ggcagtatacttttttctgcctctgcgccccagtaatgctcttctacgcc
tgaagcacaacagtatgagtcaggaagttatgtacagtatttgggagaaa
gcagggtgaaacgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74717576_74718662
seq2: B6Ng01-136N08.b_43_1124

seq1  GAATTCCATTTTCTCATTTATTATTTGGTCACTCACCCATTTAATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTCTCATTTATTATTTGGTCACTCACCCATTTAATATATA  50

seq1  TTTAAATGTAGGCAGAAGCACATTGGTGGTTTCTCTTCTCTAAAGGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTAGGCAGAAGCACATTGGTGGTTTCTCTTCTCTAAAGGTACT  100

seq1  TAGAACCTTTAGAGTGTTAGGAACAAGCAAACCCAGCACTGGGACCGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTTAGAGTGTTAGGAACAAGCAAACCCAGCACTGGGACCGCAC  150

seq1  AGGCGAGTATTGCTGAGATGGGCTTAATGAAACCTCAGAGGATCAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGTATTGCTGAGATGGGCTTAATGAAACCTCAGAGGATCAGCTGG  200

seq1  ACTGTGGGCAAACGCCTCATTTCCTGTGGATGTTCCCCTCACAAGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGCAAACGCCTCATTTCCTGTGGATGTTCCCCTCACAAGTGGAG  250

seq1  CAGAGCTTCCTCGGGCCTCACAATTATCACCCACTTGTTCTCTAGGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTCCTCGGGCCTCACAATTATCACCCACTTGTTCTCTAGGTCTC  300

seq1  AAGTTGGGTTTTTCTTTTTTTTTCCCTTGCATTAGTCAGGTTGAAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGTTTTTCTTTTTTTTTCCCTTGCATTAGTCAGGTTGAAGGATT  350

seq1  CATGGTATTAATCACGAGTGAAGTTGTTATTTATCACCTGCTGGGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATTAATCACGAGTGAAGTTGTTATTTATCACCTGCTGGGTGAGA  400

seq1  AATAATAATTTTGGCAGGAGTGGGGCAGCAGGCCAGAGGTACCAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATTTTGGCAGGAGTGGGGCAGCAGGCCAGAGGTACCAAATTAA  450

seq1  GTAAAACATCTAAACACCAGCAAGGATCATTTCTCTGATTAATGAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATCTAAACACCAGCAAGGATCATTTCTCTGATTAATGAATTGT  500

seq1  TACAAAGGAAAAGCACTACTCATTATCTGCTCTCACCAATACAGAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGAAAAGCACTACTCATTATCTGCTCTCACCAATACAGAATGGG  550

seq1  GCATGTAAGAGGAAACAGGACCAGCTTGCTCAGGCCAGCTTTTGTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAAGAGGAAACAGGACCAGCTTGCTCAGGCCAGCTTTTGTTTGTT  600

seq1  TCATTATTTTTCCCTTCTATAGAACTGTGCTGCAGTCACACCAGCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTTTCCCTTCTATAGAACTGTGCTGCAGTCACACCAGCTTTTG  650

seq1  GTTTTCTTTGTTACCAAAGTACAGAAATGGAAAAATAACTTGTTTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTGTTACCAAAGTACAGAAATGGAAAAATAACTTGTTTAAATA  700

seq1  TTACATTAGAAAATATTAAAATGATTATTGAAACAATGATTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAGAAAATATTAAAATGATTATTGAAACAATGATTTTTTTTTTT  750

seq1  GAGACAATGTCTTAGTGTATCCTTGGGTGGCCTAGACTAGGTTGGCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATGTCTTAGTGTATCCTTGGGTGGCCTAGACTAGGTTGGCCTTG  800

seq1  AACTCCAAGAATCCAGGAGGCAGCTTTGTCACTCTTCTTTTTTTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACTCCAAGAATCCAGGAGGCAGCTTTGTCACTCTTC-TTTTTTTTTTTT  849

seq1  ATTATTATTATTAGGTATTTATTTCATTTACATTTCCAATGCTATCCCAA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTATTATTATTAGGTATTTATTTCATTTACA-TTCCAATGCTATCCCAA  898

seq1  AAATTCCCCACACCCTCCC-ACTCCCAC-TTCTTGGCCCTGGCGTTCCCC  948
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  AAATTCCCCACACCCTCCCAACTCCCACTTTCTTGGCCCTGGCGTTCCCC  948

seq1  TGTACTGGGGCATATAAAGTCTTCACGACCAATGGGCCTCTCTTTCCACT  998
      |||||||||||||||||||||||||||| |||| ||| ||||||  ||||
seq2  TGTACTGGGGCATATAAAGTCTTCACGA-CAAT-GGCTTCTCTT--CACT  994

seq1  GATGGC-TGACCAGGCCATCTTCTGATACATATGTAGCTAGAGACAGGAG  1047
      |||||| ||| |||||||||||||||||||||||||||||| ||  ||||
seq2  GATGGCTTGAACAGGCCATCTTCTGATACATATGTAGCTAG-GAGCGGAG  1043

seq1  C-TCTAGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACC  1087
      | |||| |||||||||||||||||| |||||||||| ||||
seq2  CTTCTA-GGGGGTACTGGTTAGTTC-TATTGTTGTTTCACC  1082

seq1: chr2_74867622_74868643
seq2: B6Ng01-136N08.g_70_1085 (reverse)

seq1  CCACGTCTC-CCCTGCTGTCTCCCATATACTGTACATAACTTCCTGACTC  49
      |||||| || ||||||| ||||||| ||||||||||||||||||||||||
seq2  CCACGTTTCACCCTGCTTTCTCCCAAATACTGTACATAACTTCCTGACTC  50

seq1  ATACTGTTGTGCCTTCA-GCGTAGAAGAGCCATTACTGGAGCGCAGAGGG  98
      ||||||||||| ||||| ||||||||||| ||||||||| ||||||||| 
seq2  ATACTGTTGTG-CTTCAGGCGTAGAAGAG-CATTACTGGGGCGCAGAGG-  97

seq1  CCAAGAAAAAAGTAATACTGCCCCTGCAGAGCACTTTAACGCCATTTACA  148
         |||||||||| |||||| |||||||||||||||||||||||||||||
seq2  --CAGAAAAAAGT-ATACTG-CCCTGCAGAGCACTTTAACGCCATTTACA  143

seq1  ATGGAAAGAACAACTTTGAACTGCTTCCAAAATAACAGGCATTTAAAATC  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-GAAAGAACAACTTTGAACTGCTTCCAAAATAACAGGCATTTAAAATC  192

seq1  ACTTCTGTTTGCCGTTGAGATGGATTTTGCAGTAACCTTTCCAAACCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTTGCCGTTGAGATGGATTTTGCAGTAACCTTTCCAAACCTGC  242

seq1  TTCCTCTGAATGGTTTTTAGTCTACAGAGTGGCTTTCTCAATGAAAATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGAATGGTTTTTAGTCTACAGAGTGGCTTTCTCAATGAAAATTT  292

seq1  AAAATGGTGCCCATTTGAACATGACATACACCACAAAAGGCAATTTCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTGCCCATTTGAACATGACATACACCACAAAAGGCAATTTCCCA  342

seq1  ACATGCTGACAGTCACTCATGAAACCAGGGTCTGATGTCGCATCTCAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGACAGTCACTCATGAAACCAGGGTCTGATGTCGCATCTCAATG  392

seq1  ATGATTATATAAGCACGGAGATATTATGAAACACTGCTTCAAACACAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATATAAGCACGGAGATATTATGAAACACTGCTTCAAACACAGGA  442

seq1  TTAATAAAAGCAGATGCTGGGGCGTACGTCTGATAAAGGAATCGCTTAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAGCAGATGCTGGGGCGTACGTCTGATAAAGGAATCGCTTAGC  492

seq1  ACAGCTCTGTGAATTCAATTTCCCACGTCTGTCCTCACACACATCTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTGTGAATTCAATTTCCCACGTCTGTCCTCACACACATCTTTCT  542

seq1  GTAAACCTTACATCCCTTTAGCCTTTTCATCCAGCTTCATCAGATGTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCTTACATCCCTTTAGCCTTTTCATCCAGCTTCATCAGATGTTAT  592

seq1  GAGGATTTCTCAACCAGCGCTTACAAAATGGCATTCTACAAGTGAAATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTCTCAACCAGCGCTTACAAAATGGCATTCTACAAGTGAAATCC  642

seq1  ATAAGTCTTGACCCACTTTGGTTTTGATCAGCTTGGGTTTTTTTTTTAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTTGACCCACTTTGGTTTTGATCAGCTTGGGTTTTTTTTTTAAC  692

seq1  TAAGTTATCATTCAATAATAAGTTATGGTTCAAGAGCTAATATTTTAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATCATTCAATAATAAGTTATGGTTCAAGAGCTAATATTTTAAAG  742

seq1  TTGTAATAGCCCATTCACAAATTGAGATTCTCTGCTTATTCTGAGAGATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAGCCCATTCACAAATTGAGATTCTCTGCTTATTCTGAGAGATC  792

seq1  ATTTAGTGTGGACCTGTCATGGCCCACAGCTCAGTGGATCACATGACAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGTGGACCTGTCATGGCCCACAGCTCAGTGGATCACATGACAGA  842

seq1  AGCAAGACTCTCCCTAGAGCTCCCGGCTCCATCCCCTCTTTTCCACCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACTCTCCCTAGAGCTCCCGGCTCCATCCCCTCTTTTCCACCACT  892

seq1  CACTTGGCATTTTAATTTAACATTTTGGGTTATAACGTCATTGGTTCAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCATTTTAATTTAACATTTTGGGTTATAACGTCATTGGTTCAAG  942

seq1  TATTTTACAGACAGAAACTTGGCCACACAATTGTGTTAAGCCATATGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACAGACAGAAACTTGGCCACACAATTGTGTTAAGCCATATGTTC  992

seq1  TTATTCATCTTGAAATCTGAATTC  1022
      ||||||||||||||||||||||||
seq2  TTATTCATCTTGAAATCTGAATTC  1016