BAC Information

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BAC

Clone NameB6Ng01-136P15
Chromosome2 (Build37)
Map Location 24,700,173 - 24,701,299
singlet/doubletsinglet
Overlap geneEhmt1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136P15.bB6Ng01-136P15.g
ACCDH936611DH936612
length1,1151,208
definitionDH936611|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P15, 5' end.DH936612|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggccagagtggtctacaaagcaagtccaggcagccagggcta
cacagagaaaccctgtctcacatgcctccccacccccaaacaacaataac
aacagcaacaacaacaaaaaccaacctatgtgatttaaccttggcaagga
ggcaagagtggtttccatggcaatttctgtccttccttatctgggttttg
cttgtaggttttaagtcctgattgatgacttactgtgttcattactttat
ttcaagcttaattttgtttgattggttccttctgtcatcagtggttggaa
tcctgtgggacaagtgagtgctcccttatctgctagagtggtgtggtgtt
tctgaaatatgcttcatgttggaaaggcaaagtgcattgctagagcttct
tctcttagaatagggttttgtgctttggcttctgtacgataatttgggtg
tggtttcctgctcattttctccttccccatttctacaatatttttggaaa
ctcatgttttttctgtgtatgatatttattatacattttttaaaatgaaa
ttaaatctggattccgtaactacagcatttcaggcaacctctggtagaac
tgtcaaatccaagaaacagttgcttccaaggctgtttggatttggaaatt
ctcatcgtctggttccttcacctaagttgtagttcagcagatctctttga
atttcttgacagaattgcaaaggccagatcagcccaatttctttgtaaga
ctgtggcgaaggctgtgtctagactgatctcaaggttattacttctcact
gatgttagcagctgctgttacctgatgtgtaccttgatcatgcattggag
gtttcaaaatgttgctgtagttttcccatggattgtcgtttgttggtcaa
aataatctcaattgcttcattgcctagttgtattcgtcttaaaggcaaag
ctgtactgatgtgagactcttgcctagtgtctagcagtctttaagacact
aacttggttttctcagactttgaagtaactagtactcctttaaaataatg
tatgaactgtatatttcatatatggtagtttaatcttgcatgtattaaag
ctcaaatagccttac
gaattctatgaaaatgaaggcctagcatacccaaacttatgggacacaat
gaaagcagtgctaagaggaaagttcatagcactgaatgccttcacaaaga
gattggagaactctcatgctagcaatctaaaactacacctgcaaactcta
ggaacaaaagaagcaagcacaccctagagaagtagatggcaaaataatca
aacttggggctgaaatcaataaattagaaacaaagagaaaatgaaaccaa
gagcttgttctttgagaaaatcaacaagataaacaaacccttagccaaac
taactaaaaggcagagagacaatattcaaattttaaaaatcagtaatgaa
aagggagacgacaacaacagacactgaggaaattcaaagaatcattaagt
cttactttaaaaacctgtactccacaaaatctgaaaatctaaaagaaatg
gataattttctagacagacaccacttagataaatcaagatcaggtaaact
atctaaatagtcctataactcctaaggaaatagaagcagtcattaaaagt
ctcccaaccaaaaaaagcccagggctagatggtgttagtgcagaactcta
ccagactttcaaagagctaataccaatactcctcaaactattccacaaaa
cagaaacagaaggaacattgccaaactcattttatgaggccagtcaccct
gatacctaaactacacaaagactcaacaaaaaaagagaatttcagaccaa
tcttccttataaacattgatgcaaaaatactcaataatatactcgcaaac
tgaatccagggatgtatatatatatatatatcaacaaaatccatgatata
aacaaagtaaaagaaaaaaacacatgatcatctcattagatgctgaaaag
cccttgacaaaatccaactcccttcataccttggaaagatcaaagataca
ggcacaaacctaaatacataaagggatagatacagtcatagccacatcat
ttaaatggagagaacttaaagcattccacttaaattggacaagaaaggct
tatctactctcctccatagcagtcataaagtactgagttcagctgagcat
aaagaacactgaaagagatgaggataaactgagtaagtccattgcatacg
attcggagtagtctacggtttacatagcgtgtggtatctttaggcctaag
cataaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24700173_24701299
seq2: B6Ng01-136P15.b_45_1159 (reverse)

seq1  GTAAGGCTATTTGAGCTTTAATAACAATGCAAAGAATTAAACTTACCAAA  50
      |||||||||||||||||||||||   ||||||   ||||||| ||||| |
seq2  GTAAGGCTATTTGAGCTTTAATA--CATGCAA--GATTAAAC-TACCATA  45

seq1  TATAGAAATATAACAGTTCATAACAATATTGTAAAAGGAGTACTAGTTAA  100
      ||| ||||||| ||||||||| ||| |||| | ||||||||||||||| |
seq2  TAT-GAAATAT-ACAGTTCAT-ACATTATT-TTAAAGGAGTACTAGTT-A  90

seq1  CTTCAAAGTCTGAGGAAAAACCAAGTTAGTGTCTTAAAGACTGCTAGACA  150
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTCTGAG--AAAACCAAGTTAGTGTCTTAAAGACTGCTAGACA  138

seq1  CTAGGCAAGAGTCTCACATCAGTACAGCCTTGCCTCTAAGACGAATACAA  200
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  CTAGGCAAGAGTCTCACATCAGTACAGCTTTGCCTTTAAGACGAATACAA  188

seq1  CTAGGCAATGAAGCAATTGAGATTATTTTGACCAACAAACGACAATCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAATGAAGCAATTGAGATTATTTTGACCAACAAACGACAATCCAT  238

seq1  GGGAAAACTACAGCAACATTTTGAAACCTCCAATGCATGATCAAGGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTACAGCAACATTTTGAAACCTCCAATGCATGATCAAGGTACA  288

seq1  CATCAGGTAACAGCAGCTGCTAACATCAGTGAGAAGTAATAACCTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTAACAGCAGCTGCTAACATCAGTGAGAAGTAATAACCTTGAGA  338

seq1  TCAGTCTAGACACAGCCTTCGCCACAGTCTTACAAAGAAATTGGGCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAGACACAGCCTTCGCCACAGTCTTACAAAGAAATTGGGCTGAT  388

seq1  CTGGCCTTTGCAATTCTGTCAAGAAATTCAAAGAGATCTGCTGAACTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTTGCAATTCTGTCAAGAAATTCAAAGAGATCTGCTGAACTACA  438

seq1  ACTTAGGTGAAGGAACCAGACGATGAGAATTTCCAAATCCAAACAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTGAAGGAACCAGACGATGAGAATTTCCAAATCCAAACAGCCTT  488

seq1  GGAAGCAACTGTTTCTTGGATTTGACAGTTCTACCAGAGGTTGCCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAACTGTTTCTTGGATTTGACAGTTCTACCAGAGGTTGCCTGAAA  538

seq1  TGCTGTAGTTACGGAATCCAGATTTAATTTCATTTTAAAAAATGTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGTTACGGAATCCAGATTTAATTTCATTTTAAAAAATGTATAAT  588

seq1  AAATATCATACACAGAAAAAACATGAGTTTCCAAAAATATTGTAGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCATACACAGAAAAAACATGAGTTTCCAAAAATATTGTAGAAATG  638

seq1  GGGAAGGAGAAAATGAGCAGGAAACCACACCCAAATTATCGTACAGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGAAAATGAGCAGGAAACCACACCCAAATTATCGTACAGAAGC  688

seq1  CAAAGCACAAAACCCTATTCTAAGAGAAGAAGCTCTAGCAATGCACTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACAAAACCCTATTCTAAGAGAAGAAGCTCTAGCAATGCACTTTG  738

seq1  CCTTTCCAACATGAAGCATATTTCAGAAACACCACACCACTCTAGCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAACATGAAGCATATTTCAGAAACACCACACCACTCTAGCAGAT  788

seq1  AAGGGAGCACTCACTTGTCCCACAGGATTCCAACCACTGATGACAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCACTCACTTGTCCCACAGGATTCCAACCACTGATGACAGAAGG  838

seq1  AACCAATCAAACAAAATTAAGCTTGAAATAAAGTAATGAACACAGTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCAAACAAAATTAAGCTTGAAATAAAGTAATGAACACAGTAAGT  888

seq1  CATCAATCAGGACTTAAAACCTACAAGCAAAACCCAGATAAGGAAGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCAGGACTTAAAACCTACAAGCAAAACCCAGATAAGGAAGGACA  938

seq1  GAAATTGCCATGGAAACCACTCTTGCCTCCTTGCCAAGGTTAAATCACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCCATGGAAACCACTCTTGCCTCCTTGCCAAGGTTAAATCACAT  988

seq1  AGGTTGGTTTTTGTTGTTGTTGCTGTTGTTATTGTTGTTTGGGGGTGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTTTTTGTTGTTGTTGCTGTTGTTATTGTTGTTTGGGGGTGGGG  1038

seq1  AGGCATGTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGCCTGGACTTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGCCTGGACTTGC  1088

seq1  TTTGTAGACCACTCTGGCCTTGAATTC  1127
      |||||||||||||||||||||||||||
seq2  TTTGTAGACCACTCTGGCCTTGAATTC  1115