BAC Information

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BAC

Clone NameB6Ng01-137C17
Chromosome2 (Build37)
Map Location 12,898,534 - 13,067,184
singlet/doubletdoublet
Overlap genePter, C1ql3, Rsu1
Upstream geneLOC667247, Itga8, 2310047O13Rik, LOC100040837
Downstream geneCubn, Trdmt1, Vim, St8sia6, Ptpla, Stam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137C17.bB6Ng01-137C17.g
ACCDH936755DH936756
length1,1911,113
definitionDH936755|Mus musculus domesticus DNA, BAC clone: B6Ng01-137C17, 5' end.DH936756|Mus musculus domesticus DNA, BAC clone: B6Ng01-137C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,065,983 - 13,067,184)(12,898,534 - 12,899,646)
sequence
gaattcttgacacttccgattcgtcagacttattaatcagtgcagtcagc
agcagagcggttttatgagacttaccagtcatcaaaaatttattatcaga
taaatcaaagaaacaacgagtgtcttaatagggtagagacagaggcatgt
aaaggatcgtttaaggctctgcttttttgacagttgtgtgtgatatttac
aaccaatatctgagaacttactcataatttcacacatgcagtcagcagga
tgatcgttagcttcttgggcacaacatttctgtttttctccagaagaata
ctggcttaactatgagagtcaggctgctataagcaggtaggaagcaagat
ttccagtgttgtacaggcatatgatttgtaccttcttctgagtttcatca
tagaattactgagctctagggtgtttgggcatgatggctaaactagagtc
tttgcaaatggacaggaaggaaggagtgatgtggacatatttaatgtgtt
ctttctgaataatggaagttaacttaggtttactgcattttgatgttctt
ttgaagacttaattaaaaatttggctctgtgatatgggatgaactacttg
gaagggggcttcctctcttacccctaccagtgtcttcagtgtctcaatac
ctcatgatccctaggacaaaaaggaccctggcaattgggcccatcttgca
tgagacaacttttatgtagagccactgggactggacttagaatggcagag
ctgggagatatcccatcatagatacctaatttctaccacagatcttcatg
gaagccaagttctctgctcagagtgttctttctttctttctatctttgcc
tgtggaattcttagttcttccgttttcagcttaaattgtgctttcctaga
gccagttctacctgtcttccctgaggcccttttaatgtttcttcaggact
tttccgtctcttggtagcaatcttcatggcagttgcaattatgctaccat
tatgtaagtgtttggcaagggcaggacgtctgcatgttatacatactatc
attactgtttattttctatgaataataaggcatattttttgcagatattt
acatgcatatttatcacatttcatagttgacatgttcagataccagccaa
cgatcaccacgacattttttcactttaaaccagaaatattc
gaattcttgctgtcactgagagaaaaacctgggcagatactctttgtgtc
tgaaaggaaattatgtgagcaataaagaggtttttgctccttctagagat
ggcagctgattcctgtttcagcagcattctaggcttgtttctgttgccgt
gataaaataccccgacacaaagcagcttagagggggagaggttcatttta
actccagttccagatgacgacagtccatcattgtagaggagtcacagaga
caggcactgagacagctggtcacagcatacccagtcaaaagcaaagagaa
gcgagctcataaacactgcttgcttgcttgcttgtgctcagctcaatttc
tccactctgataaagttctggatcccctacctagggaatgcgtgttgcca
tccataatggtctgggtcattccatgcccattaatgtaataaagagaatt
ccctatagaaatacccaaactcagtgaagacacttcctcactgagtctcc
ctttaggttgcgtcgtgttgacattcagcttttaaccatcacagataaca
tcgtagtcactttcattgtaacagtgaagttttccttttatgtattgaaa
ggtcactttcagtttgcactatgcaataaacccccttgaaagtgaaaggg
cttgtttcttcttatttttgacattaataaacctacttatgcatttcttc
tttcctcaatgattttgtggccatcccctatgaagtgaggcaggttagag
gttctgtgttatgcttcgggcatatagcaggccgtgagcggaagttcatt
tacttcggagcaaatgggtagtaccgtgagtagaagcctcagtatatttc
attttggataagaagggggaaatggtattaatgcatggctgattttaata
ggagcttttggtaacaaagggaggagggatttatatgattttgttcaagt
atccaaaaaagcatagctaaaactgagacaaaaaaaaaaggaattttaaa
tctgaactgaactgaagaaatattttcaataataagtttaggagctgaat
cttgtcacgaagaggacttatgaagggactggggactttttaatcattca
tcccacttggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13065983_13067184
seq2: B6Ng01-137C17.b_49_1239 (reverse)

seq1  GAATGATTTCTGGTTTTTAAGTGAAAAATGTGTGTGTGTGTGTGTGTGTG  50
      |||| |||||||| ||| ||||||||||    |||  ||| |||   || 
seq2  GAAT-ATTTCTGG-TTTAAAGTGAAAAA---ATGT-CGTG-GTGATCGT-  42

seq1  TGTGTGTGTATTTGTACATTTGTCCAC-ATGAAATTGTG-TACATATGCA  98
      ||  || |||| || |||  |||| || |||||| |||| || |||||||
seq2  TGGCTG-GTATCTGAACA--TGTCAACTATGAAA-TGTGATAAATATGCA  88

seq1  TGTAAATTATCTGC--AAAATATGCCTTATTATTCATAG-AAATAAACAG  145
      |||||| |||||||  ||||||||||||||||||||||| ||||||||||
seq2  TGTAAA-TATCTGCAAAAAATATGCCTTATTATTCATAGAAAATAAACAG  137

seq1  TAATGAATAGTATGTATAACATGCAAGACGTCCTGCCCCTGCCAAACACT  195
      ||||| |||||||||||||||||| ||||||||||||| |||||||||||
seq2  TAATG-ATAGTATGTATAACATGC-AGACGTCCTGCCCTTGCCAAACACT  185

seq1  TACATAATGGTAGCAATAATTGCAACTGCCATGAAGATTGCTACCAAGAG  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACATAATGGTAGC-ATAATTGCAACTGCCATGAAGATTGCTACCAAGAG  234

seq1  ACGGAAAAGTCCTGAAGAAACATTAAAAGGGCCTCAGGGAAGACAGGTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAAAGTCCTGAAGAAACATTAAAAGGGCCTCAGGGAAGACAGGTAG  284

seq1  AACTGGCTCTAGGAAAGCACAATTTAAGCTGAAAACGGAAGAACTAAGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTCTAGGAAAGCACAATTTAAGCTGAAAACGGAAGAACTAAGAA  334

seq1  TTCCACAGGCAAAGATAGAAAGAAAGAAAGAACACTCTGAGCAGAGAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGCAAAGATAGAAAGAAAGAAAGAACACTCTGAGCAGAGAACT  384

seq1  TGGCTTCCATGAAGATCTGTGGTAGAAATTAGGTATCTATGATGGGATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCATGAAGATCTGTGGTAGAAATTAGGTATCTATGATGGGATAT  434

seq1  CTCCCAGCTCTGCCATTCTAAGTCCAGTCCCAGTGGCTCTACATAAAAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTCTGCCATTCTAAGTCCAGTCCCAGTGGCTCTACATAAAAGT  484

seq1  TGTCTCATGCAAGATGGGCCCAATTGCCAGGGTCCTTTTTGTCCTAGGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATGCAAGATGGGCCCAATTGCCAGGGTCCTTTTTGTCCTAGGGA  534

seq1  TCATGAGGTATTGAGACACTGAAGACACTGGTAGGGGTAAGAGAGGAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGTATTGAGACACTGAAGACACTGGTAGGGGTAAGAGAGGAAGC  584

seq1  CCCCTTCCAAGTAGTTCATCCCATATCACAGAGCCAAATTTTTAATTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCAAGTAGTTCATCCCATATCACAGAGCCAAATTTTTAATTAAG  634

seq1  TCTTCAAAAGAACATCAAAATGCAGTAAACCTAAGTTAACTTCCATTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAAGAACATCAAAATGCAGTAAACCTAAGTTAACTTCCATTATT  684

seq1  CAGAAAGAACACATTAAATATGTCCACATCACTCCTTCCTTCCTGTCCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAACACATTAAATATGTCCACATCACTCCTTCCTTCCTGTCCAT  734

seq1  TTGCAAAGACTCTAGTTTAGCCATCATGCCCAAACACCCTAGAGCTCAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGACTCTAGTTTAGCCATCATGCCCAAACACCCTAGAGCTCAGT  784

seq1  AATTCTATGATGAAACTCAGAAGAAGGTACAAATCATATGCCTGTACAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATGATGAAACTCAGAAGAAGGTACAAATCATATGCCTGTACAAC  834

seq1  ACTGGAAATCTTGCTTCCTACCTGCTTATAGCAGCCTGACTCTCATAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATCTTGCTTCCTACCTGCTTATAGCAGCCTGACTCTCATAGTT  884

seq1  AAGCCAGTATTCTTCTGGAGAAAAACAGAAATGTTGTGCCCAAGAAGCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTATTCTTCTGGAGAAAAACAGAAATGTTGTGCCCAAGAAGCTA  934

seq1  ACGATCATCCTGCTGACTGCATGTGTGAAATTATGAGTAAGTTCTCAGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCATCCTGCTGACTGCATGTGTGAAATTATGAGTAAGTTCTCAGAT  984

seq1  ATTGGTTGTAAATATCACACACAACTGTCAAAAAAGCAGAGCCTTAAACG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGTAAATATCACACACAACTGTCAAAAAAGCAGAGCCTTAAACG  1034

seq1  ATCCTTTACATGCCTCTGTCTCTACCCTATTAAGACACTCGTTGTTTCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTACATGCCTCTGTCTCTACCCTATTAAGACACTCGTTGTTTCTT  1084

seq1  TGATTTATCTGATAATAAATTTTTGATGACTGGTAAGTCTCATAAAACCG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCTGATAATAAATTTTTGATGACTGGTAAGTCTCATAAAACCG  1134

seq1  CTCTGCTGCTGACTGCACTGATTAATAAGTCTGACGAATCGGAAGTGTCA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCTGACTGCACTGATTAATAAGTCTGACGAATCGGAAGTGTCA  1184

seq1  AGAATTC  1202
      |||||||
seq2  AGAATTC  1191

seq1: chr2_12898534_12899646
seq2: B6Ng01-137C17.g_67_1179

seq1  GAATTCTTGCTGTCACTGAGAGAAAAACCTGGGCAGATACTCTTTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGTCACTGAGAGAAAAACCTGGGCAGATACTCTTTGTGTC  50

seq1  TGAAAGGAAATTATGTGAGCAATAAAGAGGTTTTTGCTCCTTCTAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAATTATGTGAGCAATAAAGAGGTTTTTGCTCCTTCTAGAGAT  100

seq1  GGCAGCTGATTCCTGTTTCAGCAGCATTCTAGGCTTGTTTCTGTTGCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGATTCCTGTTTCAGCAGCATTCTAGGCTTGTTTCTGTTGCCGT  150

seq1  GATAAAATACCCCGACACAAAGCAGCTTAGAGGGGGAGAGGTTCATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATACCCCGACACAAAGCAGCTTAGAGGGGGAGAGGTTCATTTTA  200

seq1  ACTCCAGTTCCAGATGACGACAGTCCATCATTGTAGAGGAGTCACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTCCAGATGACGACAGTCCATCATTGTAGAGGAGTCACAGAGA  250

seq1  CAGGCACTGAGACAGCTGGTCACAGCATACCCAGTCAAAAGCAAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGAGACAGCTGGTCACAGCATACCCAGTCAAAAGCAAAGAGAA  300

seq1  GCGAGCTCATAAACACTGCTTGCTTGCTTGCTTGTGCTCAGCTCAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTCATAAACACTGCTTGCTTGCTTGCTTGTGCTCAGCTCAATTTC  350

seq1  TCCACTCTGATAAAGTTCTGGATCCCCTACCTAGGGAATGCGTGTTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGATAAAGTTCTGGATCCCCTACCTAGGGAATGCGTGTTGCCA  400

seq1  TCCATAATGGTCTGGGTCATTCCATGCCCATTAATGTAATAAAGAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATGGTCTGGGTCATTCCATGCCCATTAATGTAATAAAGAGAATT  450

seq1  CCCTATAGAAATACCCAAACTCAGTGAAGACACTTCCTCACTGAGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGAAATACCCAAACTCAGTGAAGACACTTCCTCACTGAGTCTCC  500

seq1  CTTTAGGTTGCGTCGTGTTGACATTCAGCTTTTAACCATCACAGATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTTGCGTCGTGTTGACATTCAGCTTTTAACCATCACAGATAACA  550

seq1  TCGTAGTCACTTTCATTGTAACAGTGAAGTTTTCCTTTTATGTATTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGTCACTTTCATTGTAACAGTGAAGTTTTCCTTTTATGTATTGAAA  600

seq1  GGTCACTTTCAGTTTGCACTATGCAATAAACCCCCTTGAAAGTGAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTTCAGTTTGCACTATGCAATAAACCCCCTTGAAAGTGAAAGGG  650

seq1  CTTGTTTCTTCTTATTTTTGACATTAATAAACCTACTTATGCATTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTTCTTATTTTTGACATTAATAAACCTACTTATGCATTTCTTC  700

seq1  TTTCCTCAATGATTTTGTGGCCATCCCCTATGAAGTGAGGCAGGTTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAATGATTTTGTGGCCATCCCCTATGAAGTGAGGCAGGTTAGAG  750

seq1  GTTCTGTGTTATGCTTCGGGCATATAGCAGGCCGTGAGCGGAAGTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGTTATGCTTCGGGCATATAGCAGGCCGTGAGCGGAAGTTCATT  800

seq1  TACTTCAGGAGCAAATGGGTAGTACCGTGAGTAGAAGCCTCAGTATATTT  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTC-GGAGCAAATGGGTAGTACCGTGAGTAGAAGCCTCAGTATATTT  849

seq1  CA-TTTGGATAAGAAGGGGGAAATGGTATTAATGCATGGCTGATTTTAAT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGATAAGAAGGGGGAAATGGTATTAATGCATGGCTGATTTTAAT  899

seq1  AGGAGCTTTTGGTAACAAAGGGAGGAGGGATTTATATGATTTTTGTTCAA  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGAGCTTTTGGTAACAAAGGGAGGAGGGATTTATATGA-TTTTGTTCAA  948

seq1  GTATCCAAAAAAGCATAGCTAAAACTGAGACAAAAAAAAAAAAGAAATAT  999
      ||||||||||||||||||||||||||||||| |||||||||| ||| | |
seq2  GTATCCAAAAAAGCATAGCTAAAACTGAGAC-AAAAAAAAAAGGAATTTT  997

seq1  AAATCTGAACTGAACTGAAGAAATATTTCCAATAAATAAGTTTA-GAGCT  1048
      |||||||||||||||||||||||||||| |||| |||||||||| |||||
seq2  AAATCTGAACTGAACTGAAGAAATATTTTCAAT-AATAAGTTTAGGAGCT  1046

seq1  G-ATC-TGTCA-GAGGAGACCTGATGGAAGGGACTGGGGACATTTTATTC  1095
      | ||| ||||| || |||  || || ||||||||||||||| ||||| ||
seq2  GAATCTTGTCACGAAGAGGACTTAT-GAAGGGACTGGGGACTTTTTAATC  1095

seq1  ATGCATCCCACTTGGGGC  1113
      || |||||||||||||||
seq2  ATTCATCCCACTTGGGGC  1113