BAC Information

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BAC

Clone NameB6Ng01-137E03
Chromosome2 (Build37)
Map Location 171,132,997 - 171,244,003
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137E03.bB6Ng01-137E03.g
ACCDH936821DH936822
length1,2351,065
definitionDH936821|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E03, 5' end.DH936822|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,242,750 - 171,244,003)(171,132,997 - 171,134,062)
sequence
gaattcagagaatctcttccttagaaatctccagggctgacacaaaattg
gaagaagtgacttttctgatttttttcaagtttattctgttttctgtgtt
ccaagagatcattagcaaacaaactctcatatttcctaatgctatataac
tcttcaatcatatggccattttaaatctaagcatatccataagccatagc
tataaaataaaatcttataactagagtaggtagatacgtgaagccactta
ttgatgtgattaattttgccttcaatagtgctaagatcgacattagcaag
taagtgaggcagacacatggatttgttatcatgatgactagtgatgctcc
cagcagtgggtggccccagggctgctcaccaccctacatggcccacactc
accttgtatggtaagactgttttactgaaaaaccagtgtgtgctgtgaga
agcactcaccctcaaatgaattctagatccctgagaatataattaccccc
agtacctggctgtgaggtcctggagctctgattcatacatgcctggcatc
atcctccacccctcttttcattcccaggctcttggctcagcatccccacc
cagacacccccttcatcactggctcttttcttctccgctgccctaatatt
tccagtatattttagatttcacttcatttttacctgctcgatttttcccc
ccactttatcagaatgaaggctcacaagggccggcaacccaaaaacagag
aaaatcaaaactagaacatttgtcaaaacttaaacagctttcttgtcccg
ctgaatcatggcttcaataagtgattgctgcatcaatattccaaagcctt
ttctttttagactcctttacagagagttaaaatagagatctccaagccta
gagacacatcccacccccaaaagcgtcctcagcatgaaaccactaggaaa
atcttcccagcattcggttacaaagcttgaagcagccagatcacctgaga
catttttctcttctgcagcgtggatttgctgttggctcttctacactttt
cacagtttctggctactggaggacttgataacctactcctcagtatctca
gttttttccaattttttattgaatttttcttcattacattcaaggctatc
ctaaagttccttataacccccactctgttccatctacccattcactctgg
actgactattcctgtgatatggggcatatagagtt
gaattctttacaatagcccggccctcttttctctttttctttttcttttt
taaaattctcacactcatagcaattctcctggctcagcctcttgagttct
aaacaataagccagcattcctagtgtttcctgtatatcttagaacactca
taatagccaatctcctgtaactcaaagcttgtgctagaatgtaatagtcc
attgtaattttctttcatatttgaattggaattttcttaggaaagttact
agatggttactctttgcagtctgatataccaaagccttttaacctacaga
ttcaaatgtgtgagtcagcaatgggtatttccccttaacttcatattatt
ttcactctgagtcacagttttccacttcttcatatgtctatttatttcaa
taatgtgatatacattgtggttagtacactctggtcgctctgggtcttat
tttgaagaatggtatgtactagctagctttaaatgttaacttgttgtgag
gtagaatcacccgagaagagattctcaactgaggaactgccaagatcaga
ttgccccggtggctatgggtctggaagattgtcttgattgttcattaatg
agagagcccagcccactgtgggtggcacattccctagagcagtggtgtcc
taaactgtatgggaaagctacctaagcatgagcctgcttttcagtctgta
cgcagcagcattctacacagtttctgttatatttccttggctgtgaagtg
agctcctttggttgaaagtgatattgtgtggagtagaaaataagtctgtt
ttcaagttcttgccttgatttttttttctcagtgatggactgtgaactgc
aactataagccaaatacttttccttcccctacattggtttgggtggtttt
attacagccacagactaatattagaacatggtgatgatgagtttatctag
atacattcagtagacctatttttattgagagccttgattagagcttggtc
tcctggagggacaatgctattttgtcctaagtcataaggtgtgccctttc
tttcaggaacatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171242750_171244003
seq2: B6Ng01-137E03.b_49_1283 (reverse)

seq1  AACTTTATATGCCCCAATACAGGGGAATGACCAGGGCCAAGAAGTGGGAG  50
      |||| |||||||||||   ||  |||||   |||  |     || | || 
seq2  AACTCTATATGCCCCATATCACAGGAATAGTCAGTCC-----AGAGTGAA  45

seq1  TGGGTAGGTAGGGGAGCAGGGTGGGGGGGTTATAGGGGACTTTGGGGATA  100
      ||||||| |   ||| ||| ||  |||||||||| || |||||  |||||
seq2  TGGGTAGAT---GGAACAGAGT--GGGGGTTATAAGGAACTTT-AGGATA  89

seq1  GCATTTGAAATGTAAATGAAGAAAATATCAATAAAAAAATTGAAAAAAAC  150
      || ||   ||||| |||||||||||  ||||| ||||||||| |||||||
seq2  GCCTT--GAATGT-AATGAAGAAAAATTCAAT-AAAAAATTGGAAAAAAC  135

seq1  TGAGATAACTGAGGAGGTAGGTTATCAAGTCCT-CAGTAGCCAGGAACTG  199
      |||||| |||||||| ||||||||||||||||| |||||||||| |||||
seq2  TGAGAT-ACTGAGGA-GTAGGTTATCAAGTCCTCCAGTAGCCAGAAACTG  183

seq1  TGATAGTTGTAGGAAGAGCCAACAGCAGATCCACGCTGCAGGAGGAGAAA  249
      ||| |  |||| ||||||||||||||| |||||||||||| || ||||||
seq2  TGAAAAGTGTA-GAAGAGCCAACAGCAAATCCACGCTGCA-GAAGAGAAA  231

seq1  AATGTCTCAGGTGATCTGGCTGCTTCAAGCTTTGTAACCTGAATGCTGTG  299
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  AATGTCTCAGGTGATCTGGCTGCTTCAAGCTTTGTAACC-GAATGCTGGG  280

seq1  GAGATTTTCCTAGTGGTTTCATGCTGAGGACGCTTTTGGGGGTGGGATGT  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCCTAGTGGTTTCATGCTGAGGACGCTTTTGGGGGTGGGATGT  330

seq1  GTCTCTAGGCTTGGAGATCTCTATTTTAACTCTCTGTAAAGGAGTCTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGGCTTGGAGATCTCTATTTTAACTCTCTGTAAAGGAGTCTAAA  380

seq1  AAGAAAAGGCTTTGGAATATTGATGCAGCAATCACTTATTGAAGCCATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGCTTTGGAATATTGATGCAGCAATCACTTATTGAAGCCATGA  430

seq1  TTCAGCGGGACAAGAAAGCTGTTTAAGTTTTGACAAATGTTCTAGTTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGGGACAAGAAAGCTGTTTAAGTTTTGACAAATGTTCTAGTTTTG  480

seq1  ATTTTCTCTGTTTTTGGGTTGCCGGCCCTTGTGAGCCTTCATTCTGATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGTTTTTGGGTTGCCGGCCCTTGTGAGCCTTCATTCTGATAA  530

seq1  AGTGGGGGGAAAAATCGAGCAGGTAAAAATGAAGTGAAATCTAAAATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGGAAAAATCGAGCAGGTAAAAATGAAGTGAAATCTAAAATATA  580

seq1  CTGGAAATATTAGGGCAGCGGAGAAGAAAAGAGCCAGTGATGAAGGGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATATTAGGGCAGCGGAGAAGAAAAGAGCCAGTGATGAAGGGGGT  630

seq1  GTCTGGGTGGGGATGCTGAGCCAAGAGCCTGGGAATGAAAAGAGGGGTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTGGGGATGCTGAGCCAAGAGCCTGGGAATGAAAAGAGGGGTGG  680

seq1  AGGATGATGCCAGGCATGTATGAATCAGAGCTCCAGGACCTCACAGCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGCCAGGCATGTATGAATCAGAGCTCCAGGACCTCACAGCCAG  730

seq1  GTACTGGGGGTAATTATATTCTCAGGGATCTAGAATTCATTTGAGGGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGGTAATTATATTCTCAGGGATCTAGAATTCATTTGAGGGTGA  780

seq1  GTGCTTCTCACAGCACACACTGGTTTTTCAGTAAAACAGTCTTACCATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCACAGCACACACTGGTTTTTCAGTAAAACAGTCTTACCATAC  830

seq1  AAGGTGAGTGTGGGCCATGTAGGGTGGTGAGCAGCCCTGGGGCCACCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGTGTGGGCCATGTAGGGTGGTGAGCAGCCCTGGGGCCACCCAC  880

seq1  TGCTGGGAGCATCACTAGTCATCATGATAACAAATCCATGTGTCTGCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGCATCACTAGTCATCATGATAACAAATCCATGTGTCTGCCTC  930

seq1  ACTTACTTGCTAATGTCGATCTTAGCACTATTGAAGGCAAAATTAATCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTGCTAATGTCGATCTTAGCACTATTGAAGGCAAAATTAATCAC  980

seq1  ATCAATAAGTGGCTTCACGTATCTACCTACTCTAGTTATAAGATTTTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAGTGGCTTCACGTATCTACCTACTCTAGTTATAAGATTTTATT  1030

seq1  TTATAGCTATGGCTTATGGATATGCTTAGATTTAAAATGGCCATATGATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTATGGCTTATGGATATGCTTAGATTTAAAATGGCCATATGATT  1080

seq1  GAAGAGTTATATAGCATTAGGAAATATGAGAGTTTGTTTGCTAATGATCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTATATAGCATTAGGAAATATGAGAGTTTGTTTGCTAATGATCT  1130

seq1  CTTGGAACACAGAAAACAGAATAAACTTGAAAAAAATCAGAAAAGTCACT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACACAGAAAACAGAATAAACTTGAAAAAAATCAGAAAAGTCACT  1180

seq1  TCTTCCAATTTTGTGTCAGCCCTGGAGATTTCTAAGGAAGAGATTCTCTG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAATTTTGTGTCAGCCCTGGAGATTTCTAAGGAAGAGATTCTCTG  1230

seq1  AATTC  1254
      |||||
seq2  AATTC  1235

seq1: chr2_171132997_171134062
seq2: B6Ng01-137E03.g_67_1131

seq1  GAATTCTTTACAATAGCCCGGCCCTCTTTTCTCTTTTTCTTTTTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAATAGCCCGGCCCTCTTTTCTCTTTTTCTTTTTCTTTTT  50

seq1  TAAAATTCTCACACTCATAGCAATTCTCCTGGCTCAGCCTCTTGAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTCACACTCATAGCAATTCTCCTGGCTCAGCCTCTTGAGTTCT  100

seq1  AAACAATAAGCCAGCATTCCTAGTGTTTCCTGTATATCTTAGAACACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAGCCAGCATTCCTAGTGTTTCCTGTATATCTTAGAACACTCA  150

seq1  TAATAGCCAATCTCCTGTAACTCAAAGCTTGTGCTAGAATGTAATAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCCAATCTCCTGTAACTCAAAGCTTGTGCTAGAATGTAATAGTCC  200

seq1  ATTGTAATTTTCTTTCATATTTGAATTGGAATTTTCTTAGGAAAGTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTTTCTTTCATATTTGAATTGGAATTTTCTTAGGAAAGTTACT  250

seq1  AGATGGTTACTCTTTGCAGTCTGATATACCAAAGCCTTTTAACCTACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTACTCTTTGCAGTCTGATATACCAAAGCCTTTTAACCTACAGA  300

seq1  TTCAAATGTGTGAGTCAGCAATGGGTATTTCCCCTTAACTTCATATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTGTGAGTCAGCAATGGGTATTTCCCCTTAACTTCATATTATT  350

seq1  TTCACTCTGAGTCACAGTTTTCCACTTCTTCATATGTCTATTTATTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGAGTCACAGTTTTCCACTTCTTCATATGTCTATTTATTTCAA  400

seq1  TAATGTGATATACATTGTGGTTAGTACACTCTGGTCGCTCTGGGTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATATACATTGTGGTTAGTACACTCTGGTCGCTCTGGGTCTTAT  450

seq1  TTTGAAGAATGGTATGTACTAGCTAGCTTTAAATGTTAACTTGTTGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAATGGTATGTACTAGCTAGCTTTAAATGTTAACTTGTTGTGAG  500

seq1  GTAGAATCACCCGAGAAGAGATTCTCAACTGAGGAACTGCCAAGATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCACCCGAGAAGAGATTCTCAACTGAGGAACTGCCAAGATCAGA  550

seq1  TTGCCCCGGTGGCTATGGGTCTGGAAGATTGTCTTGATTGTTCATTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCGGTGGCTATGGGTCTGGAAGATTGTCTTGATTGTTCATTAATG  600

seq1  AGAGAGCCCAGCCCACTGTGGGTGGCACATTCCCTAGAGCAGTGGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCCAGCCCACTGTGGGTGGCACATTCCCTAGAGCAGTGGTGTCC  650

seq1  TAAACTGTATGGGAAAGCTACCTAAGCATGAGCCTGCTTTTCAGTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTATGGGAAAGCTACCTAAGCATGAGCCTGCTTTTCAGTCTGTA  700

seq1  CGCAGCAGCATTCTACACAGTTTCTGTTATATTTCCTTGGCTGTGAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCAGCATTCTACACAGTTTCTGTTATATTTCCTTGGCTGTGAAGTG  750

seq1  AGCTCC-TTGGTTGAAAGTGATATTGTGTGGAGTAGAAAATAAGTCTGTT  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTTGGTTGAAAGTGATATTGTGTGGAGTAGAAAATAAGTCTGTT  800

seq1  TTCAAGTTCTTGCCTTGATTTTTTTTTCTCAGTGATGGACTGTGAACTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCTTGCCTTGATTTTTTTTTCTCAGTGATGGACTGTGAACTGC  850

seq1  AACTATAAGCCAAATACCTTTCCTTCCCCTACATTGGTTTGGGT-GTTTT  898
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  AACTATAAGCCAAATACTTTTCCTTCCCCTACATTGGTTTGGGTGGTTTT  900

seq1  ATTACAGCAACAGACTAATATTAGAACATGGTGATGATGAGTTTAATCTA  948
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ATTACAGCCACAGACTAATATTAGAACATGGTGATGATGAGTTT-ATCTA  949

seq1  GATACAATCAGTAGAACTTATTTTTATTGTAGAGCCTTGATTTAGAGCTT  998
      |||||| ||||||| || ||||||||||| |||||||||| |||||||||
seq2  GATACATTCAGTAG-ACCTATTTTTATTG-AGAGCCTTGA-TTAGAGCTT  996

seq1  GGTCTC--TGAGGGACTATGCTATTTTTGTTCTAAGTCATAAGGTGTGCC  1046
      ||||||   ||||||| |||||| |||||| |||||||||||||||||||
seq2  GGTCTCCTGGAGGGACAATGCTA-TTTTGTCCTAAGTCATAAGGTGTGCC  1045

seq1  CTTTCATTCAAGGACATGTC  1066
      ||||| |||| | |||||||
seq2  CTTTCTTTCAGGAACATGTC  1065