BAC Information

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BAC

Clone NameB6Ng01-137E04
Chromosome2 (Build37)10 (Build37)
Map Location 142,776,568 - 142,777,69816,315,759 - 16,316,844
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137E04.bB6Ng01-137E04.g
ACCDH936823DH936824
length9701,076
definitionDH936823|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E04, 5' end.DH936824|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,568 - 142,777,698)(16,315,759 - 16,316,844)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgcagtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgatttcttttccatctgatttcccttctca
gtcaaaattttagaatggaacttgtgacattaataagtaaattacatgct
caataatattaatgaagacttccaacgtgacagcagacagattgaatatt
accttgagaattaaagtgaatatggagaatacaggagttatctttcagtc
tcagtgagtggaagtaaatgttggatctacctttttcatataaaatcagc
caattatttttttaaattctgcaagaatttcatgggatgcactttgatta
ttttcactcttctccaagtc
gaattctcccttgattttagaatttcctcggctttttgacactgagtttg
catccatgtgaactttaggaatatcaacgtagttcttcaaatcttttcat
tagacttatgaaggatgtttcaatgaatctatacattgtttgcagtgatg
gaatcattttcagagtattaatcattttttttcagtattaattataatgg
tatatgggcttatggagtctaccaatcctcaacatcttctctaattgctc
tttcaattttgagtttttatggccttttgctttcacctcctgattaggtt
tatttctgagtattttgcatttattatttttagaaaccattgagtagaat
tcttccagattaatttctctaaaaagctgttttttaaatctaggaaagct
aatcattttcttaataacgatgcttttccgaaagggacacacacacacgc
acacacagacacacacacagacacatacacacacccatacacacacacaa
acacacacacacacacacacacacacacacacacacactttctagtttgc
tttttgctttttcaggtgtttaggttattggaatttgtcaaaagcatttt
ctgcattgcctgacatgatgttgtgattcctgctagagggtttatgtata
atttaccattttcttttctttatttttgatgaagtaattatataactaga
gatcctcactcctttttaattgaaactatttacttgcaagtagtttttaa
ataaattctttgagaatttcatgtaatatattttgatcttatccaccgca
agtcctctcacactccttccaggtaaacccttctactggctcccagtttt
gtgtcctttgttattacgtataattttaaataatgtggttcatttctgca
gccaatatgcttatgaatgtaagactatcttctgtagcgtggtgatctac
gagaagccatttttaaggaaactgatttttcctcaggagtatcactgaca
atagcatttttgtgaggattggactcatgactatcttacttccatgctag
aggtgactggctgttcttgtaggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776568_142777698
seq2: B6Ng01-137E04.b_45_715 (reverse)

seq1  CAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCT  50
      |||||||||||||||||||||||||||| ||||| |||||||||||||| 
seq2  CAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCCA  50

seq1  GACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTG  100

seq1  GTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGATCCAGAAA  150

seq1  TGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACC  200

seq1  ATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTG  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTG  250

seq1  GTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTA  300

seq1  CTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACA  350

seq1  CTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAC  400

seq1  AGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGA  450
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGGAAAAATTCCTGAACAGAACTGCAATGGCTTGTGCTGTAAGATCGA  450

seq1  GAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAA  500
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAA  500

seq1  GACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTT  550

seq1  TACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAAC  600

seq1  TCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  650

seq1  TCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCT  700
      ||| ||            ||| |||||    |||                
seq2  TCAGAA----------CTGAACAAAGA----ATTC---------------  671

seq1  GGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTA  750
                                                        
seq2  --------------------------------------------------  671

seq1  TCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAA  800
                                                        
seq2  --------------------------------------------------  671

seq1  ACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAG  850
                                                        
seq2  --------------------------------------------------  671

seq1  ATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCT  900
                                                        
seq2  --------------------------------------------------  671

seq1  GTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTG  950
                                                        
seq2  --------------------------------------------------  671

seq1  CAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGG  1000
                                                        
seq2  --------------------------------------------------  671

seq1  AAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATA  1050
                                                        
seq2  --------------------------------------------------  671

seq1  TATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAA  1100
                                                        
seq2  --------------------------------------------------  671

seq1  AAAATGGGGCTCAGAACTGAACAAAGAATTC  1131
                                     
seq2  -------------------------------  671

seq1: chr10_16315759_16316844
seq2: B6Ng01-137E04.g_69_1144

seq1  GAATTCTCCCTTGATTTTAGAATTTCCTCGGCTTTTTGACACTGAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTGATTTTAGAATTTCCTCGGCTTTTTGACACTGAGTTTG  50

seq1  CATCCATGTGAACTTTAGGAATATCAACGTAGTTCTTCAAATCTTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTGAACTTTAGGAATATCAACGTAGTTCTTCAAATCTTTTCAT  100

seq1  TAGACTTATGAAGGATGTTTCAATGAATCTATACATTGTTTGCAGTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTATGAAGGATGTTTCAATGAATCTATACATTGTTTGCAGTGATG  150

seq1  GAATCATTTTCAGAGTATTAATCATTTTTTTTCAGTATTAATTATAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTTCAGAGTATTAATCATTTTTTTTCAGTATTAATTATAATGG  200

seq1  TATATGGGCTTATGGAGTCTACCAATCCTCAACATCTTCTCTAATTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGGCTTATGGAGTCTACCAATCCTCAACATCTTCTCTAATTGCTC  250

seq1  TTTCAATTTTGAGTTTTTATGGCCTTTTGCTTTCACCTCCTGATTAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTTGAGTTTTTATGGCCTTTTGCTTTCACCTCCTGATTAGGTT  300

seq1  TATTTCTGAGTATTTTGCATTTATTATTTTTAGAAACCATTGAGTAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGAGTATTTTGCATTTATTATTTTTAGAAACCATTGAGTAGAAT  350

seq1  TCTTCCAGATTAATTTCTCTAAAAAGCTGTTTTTTAAATCTAGGAAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGATTAATTTCTCTAAAAAGCTGTTTTTTAAATCTAGGAAAGCT  400

seq1  AATCATTTTCTTAATAACGATGCTTTTCCGAAAGGGACACACACACACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTCTTAATAACGATGCTTTTCCGAAAGGGACACACACACACGC  450

seq1  ACACACAGACACACACACAGACACATACACACACCCATACACACACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACACACAGACACATACACACACCCATACACACACACAA  500

seq1  ACACACACACACACACACACACACACACACACACACACTTTCTAGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACTTTCTAGTTTGC  550

seq1  TTTTTGCTTTTTCAGGTGTTTAGGTTATTGGAATTTGTCAAAAGCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTTTCAGGTGTTTAGGTTATTGGAATTTGTCAAAAGCATTTT  600

seq1  CTGCATTGCCTGACATGATGTTGTGATTCCTGCTAGAGGGTTTATGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGCCTGACATGATGTTGTGATTCCTGCTAGAGGGTTTATGTATA  650

seq1  ATTTACCATTTTCTTTTCTTTATTTTTGATGAAGTAATTATATAACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCATTTTCTTTTCTTTATTTTTGATGAAGTAATTATATAACTAGA  700

seq1  GATCCTCACTCCTTTTTAATTGAAACTATTTACTTGCAAGTAGTTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACTCCTTTTTAATTGAAACTATTTACTTGCAAGTAGTTTTTAA  750

seq1  ATAAATTCTTTGAGAATTTCATGTAATATATTTTGATCTTATCCACCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTTTGAGAATTTCATGTAATATATTTTGATCTTATCCACCGCA  800

seq1  AGTCCTCTCACACTCCTTCCAGGTAAACCC-TCTACTGGCTCCCAGTTTT  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTCCTCTCACACTCCTTCCAGGTAAACCCTTCTACTGGCTCCCAGTTTT  850

seq1  GTGTCCTTTGTTATTACGTATAATTTTAAATAATGTGGTTCAATTTCTGC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGTCCTTTGTTATTACGTATAATTTTAAATAATGTGGTTC-ATTTCTGC  899

seq1  AGCCAATATGCTTATGAATGTAAGACTATCTTCTGTAGCGTGGTTGATCT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCAATATGCTTATGAATGTAAGACTATCTTCTGTAGCGTGG-TGATCT  948

seq1  ACGAGAAGCCCATTTTTAAGGAAAACTGATTTTTCCTCAGGAGGTATCAA  999
      |||||||| |||||||||||| |||||||||||||||||||| ||||| |
seq2  ACGAGAAG-CCATTTTTAAGG-AAACTGATTTTTCCTCAGGA-GTATC-A  994

seq1  CTGACAATAGCA-TTTTGTGAGGGATTGGACTCATGACTATCTTACTTCC  1048
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  CTGACAATAGCATTTTTGTGA-GGATTGGACTCATGACTATCTTACTTCC  1043

seq1  ATGCTAGAATGTTGACTGGTTTGTTCTTGTATAGGTCT  1086
      ||||||||  | |||||||  ||||||||  |||||||
seq2  ATGCTAGA--GGTGACTGG-CTGTTCTTG--TAGGTCT  1076