BAC Information

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BAC

Clone NameB6Ng01-137E12
Chromosome2 (Build37)
Map Location 121,428,222 - 121,581,008
singlet/doubletdoublet
Overlap geneFrmd5
Upstream geneLrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137E12.bB6Ng01-137E12.g
ACCDH936839DH936840
length1,003978
definitionDH936839|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E12, 5' end.DH936840|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,580,003 - 121,581,008)(121,428,222 - 121,429,194)
sequence
gaattctatttccttggctcaaaggaggaagaatgtacaaaaaaagagat
cagtcgcatcacttgagaggggagcacaaaggagaggatgcctgtctttc
tcctcgtcttccaaacctgatcagttataagcatctggtcccctctttga
cctttatcccgactgtgagaatgtgttgttctggcaaccgcatgcctatt
tgccatctttgtcctcggactcccttttaaaaggagccctgcagctgtga
gaggtgcaggctctgactgaaatatatcctgaaatatcctttcacctcct
ctacccttttctcctcttcttcatcctaccacttatcagcacacaccctg
agccactgactgtcacaatgaggagggctggtggtcaagtcgggtggatg
gggcccagtctttagtagcactagcttgagcccccatgctcacagtagta
gctctgtggaaaaaggaagaccctgccttgctgtttctggctttgttgtt
gttgtttttagagctaaagtatttaactcgttagctgccagacacaacca
aaggaagacgtgacatttgaaatgcaaaatctcaatctaattttcttatt
gaaaatggtatcattttcagtaataatttatttttatatgccccgatttt
aattttaaaatattttcattaatttatttgcttcatatctgcctttcagc
ccccttctcctctcagtcctacactcacagccctctccacccatcacccc
tcccctgtactcctcagagaaggggaaagggtactagcacacaccacaca
cccccaaaacccaggcacatcaactctcagctggactaagtacaccgctc
ccaccgaggccagacaggtcagtacagctaggagaaagagattctggctt
catttgaatcccgctgatttccagagaccctcacctgcacctcacccatc
agcttttgggcttttggggctcgatgaggctgccttgaatgcccgtgaag
gtt
aaaatctgaactgacggtcttaaagaccagagtctctagacatatgcccc
tccttcccatacagcaaaatctagctcaaagactcctgctgggaagcagg
catttccaactgcagtgactcaggactcattacgagatccaacaacttgg
ctttccagagtccgtggggctttgacgatctaaattaaggtttgcttaat
ggagtggctttgctttagaaaacagttttgttggaaatctgagatgtgct
tcccctaaaatacatttaatgttactcatctggaataatgggacagaggg
gaccaggattacttaccagctcttaagtgtttataatgaaatgaaatatt
tgctactttcagtgatgatatatgtaaagtaaaaatataaattaatcatg
agtaagcagacattaacgaggacacatggtatatatttatgaataatact
gctccacaaaagagagttccttaatattaaggactgggctaggtatataa
ttctatggtagagtgttgcttagcatatgtgtgttccttggtttgagctc
caataccacagaaagtttttgtgtgtgcatgtattaagtatataagatcc
agaattttaagatgattataagatccagaatttttaagaccatagataat
tttcagattctttttttttctctcttttccagagaccatggggagtggac
agtctaattcaggcttgcttaacggaatggctttgccttagaaaattttg
agatatggtcttatgctgtaggctggtttggcctgaaactcactatgtag
catagggttggctttgaactagcagcagtccttcctgtctcaggttccca
aggttatagcaaccagcagccacctttgttgctttagctctgtactgagt
ggaataaacattcttccaagttatgtgcaggaaaatcctggactatgccg
tacactggataggagtctttaaaagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121580003_121581008
seq2: B6Ng01-137E12.b_47_1049 (reverse)

seq1  AACCTTCTGCGGCA-TCAAGTGCAGCCTCATCGAGCCCCAAAAGCCCAAA  49
      |||||||   |||| ||||| |||||||||||||||||||||||||||||
seq2  AACCTTCACGGGCATTCAAG-GCAGCCTCATCGAGCCCCAAAAGCCCAAA  49

seq1  AGCTGATGGACGAGGTGCAGGTGAGGGTTCTCTGGAAATCAGCGGGATTC  99
      |||||||||  |||||||||||||||| ||||||||||||||||||||||
seq2  AGCTGATGGGTGAGGTGCAGGTGAGGG-TCTCTGGAAATCAGCGGGATTC  98

seq1  AAAATGAAGCCAGAATCTCTTTCTCCTAGCTGTACTGACCTGTCTGGCCT  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAATGAAGCCAGAATCTCTTTCTCCTAGCTGTACTGACCTGTCTGGCCT  147

seq1  CGGTGGGAGCGGGTGTACTTAGTCCAGCTGAGAGTTGATGTGCCTGGGTT  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGAGC-GGTGTACTTAGTCCAGCTGAGAGTTGATGTGCCTGGGTT  196

seq1  TTGGGGGTGTGTGGTGTGTGCTAGTACCC-TTCCCCTTCTCTGAGGAGTA  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGGGGGTGTGTGGTGTGTGCTAGTACCCTTTCCCCTTCTCTGAGGAGTA  246

seq1  CAGGGGAGGGGTGATGGGTGGAGAGGGCTGTGAGTGTAGGACTGAGAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGGGGTGATGGGTGGAGAGGGCTGTGAGTGTAGGACTGAGAGGA  296

seq1  GAAGGGGGCTGAAAGGCAGATATGAAGCAAATAAATTAATGAAAATATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGCTGAAAGGCAGATATGAAGCAAATAAATTAATGAAAATATTT  346

seq1  TAAAAATTAAAATCGGGGCATATAAAAATAAATTATTACTGAAAATGATA  398
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAATTAAAATCGGGGCATATAAAAATAAATTATTACTGAAAATGATA  395

seq1  CCATTTTCAATAAGAAAATTAGATTGAGATTTTGCATTTCAAATGTCACG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCAATAAGAAAATTAGATTGAGATTTTGCATTTCAAATGTCACG  445

seq1  TCTTCCTTTGGTTGTGTCTGGCAGCTAACGAGTTAAATACTTTAGCTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTGGTTGTGTCTGGCAGCTAACGAGTTAAATACTTTAGCTCTA  495

seq1  AAAACAACAACAACAAAGCCAGAAACAGCAAGGCAGGGTCTTCCTTTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAAAGCCAGAAACAGCAAGGCAGGGTCTTCCTTTTTC  545

seq1  CACAGAGCTACTACTGTGAGCATGGGGGCTCAAGCTAGTGCTACTAAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTACTACTGTGAGCATGGGGGCTCAAGCTAGTGCTACTAAAGA  595

seq1  CTGGGCCCCATCCACCCGACTTGACCACCAGCCCTCCTCATTGTGACAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCCCATCCACCCGACTTGACCACCAGCCCTCCTCATTGTGACAGT  645

seq1  CAGTGGCTCAGGGTGTGTGCTGATAAGTGGTAGGATGAAGAAGAGGAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTCAGGGTGTGTGCTGATAAGTGGTAGGATGAAGAAGAGGAGAA  695

seq1  AAGGGTAGAGGAGGTGAAAGGATATTTCAGGATATATTTCAGTCAGAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGAGGAGGTGAAAGGATATTTCAGGATATATTTCAGTCAGAGCC  745

seq1  TGCACCTCTCACAGCTGCAGGGCTCCTTTTAAAAGGGAGTCCGAGGACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCTCACAGCTGCAGGGCTCCTTTTAAAAGGGAGTCCGAGGACAA  795

seq1  AGATGGCAAATAGGCATGCGGTTGCCAGAACAACACATTCTCACAGTCGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAATAGGCATGCGGTTGCCAGAACAACACATTCTCACAGTCGG  845

seq1  GATAAAGGTCAAAGAGGGGACCAGATGCTTATAACTGATCAGGTTTGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGTCAAAGAGGGGACCAGATGCTTATAACTGATCAGGTTTGGAA  895

seq1  GACGAGGAGAAAGACAGGCATCCTCTCCTTTGTGCTCCCCTCTCAAGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGGAGAAAGACAGGCATCCTCTCCTTTGTGCTCCCCTCTCAAGTGA  945

seq1  TGCGACTGATCTCTTTTTTTGTACATTCTTCCTCCTTTGAGCCAAGGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTGATCTCTTTTTTTGTACATTCTTCCTCCTTTGAGCCAAGGAAA  995

seq1  TAGAATTC  1006
      ||||||||
seq2  TAGAATTC  1003

seq1: chr2_121428222_121429194
seq2: B6Ng01-137E12.g_81_1058

seq1  AAAATCTGAACTGACGGTCTTAAAGACCAGAGTCTCTAGACATATGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGAACTGACGGTCTTAAAGACCAGAGTCTCTAGACATATGCCCC  50

seq1  TCCTTCCCATACAGCAAAATCTAGCTCAAAGACTCCTGCTGGGAAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCATACAGCAAAATCTAGCTCAAAGACTCCTGCTGGGAAGCAGG  100

seq1  CATTTCCAACTGCAGTGACTCAGGACTCATTACGAGATCCAACAACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAACTGCAGTGACTCAGGACTCATTACGAGATCCAACAACTTGG  150

seq1  CTTTCCAGAGTCCGTGGGGCTTTGACGATCTAAATTAAGGTTTGCTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAGTCCGTGGGGCTTTGACGATCTAAATTAAGGTTTGCTTAAT  200

seq1  GGAGTGGCTTTGCTTTAGAAAACAGTTTTGTTGGAAATCTGAGATGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGCTTTGCTTTAGAAAACAGTTTTGTTGGAAATCTGAGATGTGCT  250

seq1  TCCCCTAAAATACATTTAATGTTACTCATCTGGAATAATGGGACAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAAATACATTTAATGTTACTCATCTGGAATAATGGGACAGAGGG  300

seq1  GACCAGGATTACTTACCAGCTCTTAAGTGTTTATAATGAAATGAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGATTACTTACCAGCTCTTAAGTGTTTATAATGAAATGAAATATT  350

seq1  TGCTACTTTCAGTGATGATATATGTAAAGTAAAAATATAAATTAATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTCAGTGATGATATATGTAAAGTAAAAATATAAATTAATCATG  400

seq1  AGTAAGCAGACATTAACGAGGACACATGGTATATATTTATGAATAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCAGACATTAACGAGGACACATGGTATATATTTATGAATAATACT  450

seq1  GCTCCACAAAAGAGAGTTCCTTAATATTAAGGACTGGGCTAGGTATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAAAAGAGAGTTCCTTAATATTAAGGACTGGGCTAGGTATATAA  500

seq1  TTCTATGGTAGAGTGTTGCTTAGCATATGTGTGTTCCTTGGTTTGAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGTAGAGTGTTGCTTAGCATATGTGTGTTCCTTGGTTTGAGCTC  550

seq1  CAATACCACAGAAAGTTTTTGTGTGTGCATGTATTAAGTATATAAGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCACAGAAAGTTTTTGTGTGTGCATGTATTAAGTATATAAGATCC  600

seq1  AGAATTTTAAGATGATTATAAGATCCAGAA-TTTTAAGACCATAGATAAT  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAATTTTAAGATGATTATAAGATCCAGAATTTTTAAGACCATAGATAAT  650

seq1  TTTCAGATTCTTTTTTTTTCTCTC-TTTCCAGAGACCATGGGGAGTGGAC  698
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTCAGATTCTTTTTTTTTCTCTCTTTTCCAGAGACCATGGGGAGTGGAC  700

seq1  AGTCTAAATCAGGCTTGCTTAACGGAATGGCTTTGCCTTAGAAAATTTTG  748
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTCAGGCTTGCTTAACGGAATGGCTTTGCCTTAGAAAATTTTG  750

seq1  AGATATGGTCTTATGCTGTAGGCTGGTTTGGCCTGAAACTCACTATGTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGTCTTATGCTGTAGGCTGGTTTGGCCTGAAACTCACTATGTAG  800

seq1  CATA-GGTTGGCTTTGAACTAGCAGCAGTCC-TCCTGTCTCAGGTTCCCA  846
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATAGGGTTGGCTTTGAACTAGCAGCAGTCCTTCCTGTCTCAGGTTCCCA  850

seq1  AGGTTATAGCAACCAGCAGCCACC-TTGTTGCTTTAGCTCTGTACTGAGT  895
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGTTATAGCAACCAGCAGCCACCTTTGTTGCTTTAGCTCTGTACTGAGT  900

seq1  GG-ATTAACATTCTCCCAAGTTATGTGCAGGTAGATCCTGGACTATGCAC  944
      || || |||||||| |||||||||||||||| | |||||||||||||| |
seq2  GGAATAAACATTCTTCCAAGTTATGTGCAGGAAAATCCTGGACTATGC-C  949

seq1  GTACA-TGGAAAGGAGGTCTTTAAAAGTAT  973
      ||||| |||| |||| ||||||||||||||
seq2  GTACACTGGATAGGA-GTCTTTAAAAGTAT  978