BAC Information

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BAC

Clone NameB6Ng01-137F09
Chromosome2 (Build37)
Map Location 152,461,978 - 152,569,777
singlet/doubletdoublet
Overlap geneH13, Mcts2, Id1
Upstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
Downstream geneLOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137F09.bB6Ng01-137F09.g
ACCDH936879DH936880
length1,002450
definitionDH936879|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F09, 5' end.DH936880|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,568,777 - 152,569,777)(152,461,978 - 152,462,433)
sequence
gaattcctggtctccctgaggcagattgagaccctgccttaataccaact
aacagaaacaaaactttggagtgaggcctgatggcacatacctttaatcc
ctggaagcagaggcaagtgtttctctggaggtctacacagcaagttccag
gctatccagggctacttggtgaggtctagtctcaaaaaaaaaaaaaaaaa
aaaaaaaacaaatgacaaaaactggggtccctcagtgggttctatctttg
ctttttgtttggtttgttcctgtgctggacctcactcaaacccagggctt
ggaacaagtataacacgtgctccacccccaagatagaccatagcccttca
tggttggttatgagacaaggtctgtgttatgatttgaatagaaagtgtcc
cacacaggtgtggtattattttggaaggttctggaaactttaggagatgg
gacccattgtaaatcaggcgtgctccaagagactgcctttcagtgactca
gcttacatcatcagccaccgccattgtcgccaggtgcggtgcatttccac
agctgctagcacagcttatgtcaccacagttgcagagccatgtgcactcc
ctttaaaaggtccagggccatctgaagttgctctgtatgttctgtctccc
tctctgtctctgtctctctctctctctgtgtatgtgtgtgtctctcttta
tcttgctctcatgtccccactcccagaaggcctttcacttctccccctcc
cccaataaacaataaacctcttggattagatctgttgtgccactattagt
tgcacactttggctccgaacctaccaagggacatttttctctggcgtatc
ctagtaggacataactgtaaaaaaagacgaaacagattccttgtggaata
ttgtcccagctctaaggttttttttaaatgcattttattatagttttcaa
atatggtctatgggggaatactccgggatgcaaggtgtctgccgaaccca
gt
catggaactcggtccattaatcccaggatggacactaatttagttcagtg
cattcatcttccaaatgtggaaaatgaagccctgagacaggcagagagta
ctccagagtcacccagtcagtgagtttcggggccctcaagatccagcccc
ctcctctgacctcccttggctgtgagggatgagggacacagtgaagcttc
ccgcctggctgaggacccagctgggtgtaggggtcgggtcaggagtttcc
atctcggggaggatgggggaggagggactgtcacaactttgagaagagaa
caagatgcaaactgtttagaccacactgcctcatatttctgactctcctg
cctccaacctactgcccacctctagactcctggtctctacaaggaagaca
cccgtgacccattccagaggatgaggcatggaaaaaaaatcattcttcta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152568777_152569777
seq2: B6Ng01-137F09.b_49_1050 (reverse)

seq1  ACTGGGTTCTGCAGACACC-TGCATCCAGGAGTATACCCCCATAGACATA  49
      ||||||||| ||||||||| ||||||| ||||||| |||||||||||   
seq2  ACTGGGTTCGGCAGACACCTTGCATCCCGGAGTATTCCCCCATAGACCAT  50

seq1  ATTTGAAAACTAATAATAAAATGCATTTTAAAAAAACCTTAGAGCTGGGA  99
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATTTGAAAACT-ATAATAAAATGCATTTAAAAAAAACCTTAGAGCTGGGA  99

seq1  CAATATTTCCAC-AGGGATCTGTTTCCGTC-TTTTTTACAGTTATGTCCT  147
      ||||| |||||| ||| |||||||| |||| |||||||||||||||||||
seq2  CAATA-TTCCACAAGGAATCTGTTT-CGTCTTTTTTTACAGTTATGTCCT  147

seq1  ACTAGGATAACGCAGAG-AAAATGTACCTTGGTGGGTTCGGGGCCAAGGT  196
      |||||||||   ||||| ||||||| ||||||| ||||||| ||||| ||
seq2  ACTAGGATACGCCAGAGAAAAATGTCCCTTGGTAGGTTCGGAGCCAAAGT  197

seq1  GTGCAACTAATAGTTGGCACAACAGATCTAATCCAAGAGGTTTATTGTTT  246
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTAATAG-TGGCACAACAGATCTAATCCAAGAGGTTTATTGTTT  246

seq1  ATTGGGGGAGGGGGAG-AGTGAAAGGCCTTCTGGGAGTGGGGACATGAGA  295
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTGGGGGAGGGGGAGAAGTGAAAGGCCTTCTGGGAGTGGGGACATGAGA  296

seq1  GCAAGATAAAGAGAGACACACACATACACAGAGAGAGAGAGAGACAGAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATAAAGAGAGACACACACATACACAGAGAGAGAGAGAGACAGAGA  346

seq1  CAGAGAGGGAGACAGAACATACAGAGCAACTTCAGATGGCCCTGGACCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAGACAGAACATACAGAGCAACTTCAGATGGCCCTGGACCTT  396

seq1  TTAAAGGGAGTGCACATGGCTCTGCAACTGTGGTGACATAAGCTGTGCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGAGTGCACATGGCTCTGCAACTGTGGTGACATAAGCTGTGCTA  446

seq1  GCAGCTGTGGAAATGCACCGCACCTGGCGACAATGGCGGTGGCTGATGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTGGAAATGCACCGCACCTGGCGACAATGGCGGTGGCTGATGAT  496

seq1  GTAAGCTGAGTCACTGAAAGGCAGTCTCTTGGAGCACGCCTGATTTACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGAGTCACTGAAAGGCAGTCTCTTGGAGCACGCCTGATTTACAA  546

seq1  TGGGTCCCATCTCCTAAAGTTTCCAGAACCTTCCAAAATAATACCACACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCATCTCCTAAAGTTTCCAGAACCTTCCAAAATAATACCACACC  596

seq1  TGTGTGGGACACTTTCTATTCAAATCATAACACAGACCTTGTCTCATAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGACACTTTCTATTCAAATCATAACACAGACCTTGTCTCATAAC  646

seq1  CAACCATGAAGGGCTATGGTCTATCTTGGGGGTGGAGCACGTGTTATACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGAAGGGCTATGGTCTATCTTGGGGGTGGAGCACGTGTTATACT  696

seq1  TGTTCCAAGCCCTGGGTTTGAGTGAGGTCCAGCACAGGAACAAACCAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGCCCTGGGTTTGAGTGAGGTCCAGCACAGGAACAAACCAAAC  746

seq1  AAAAAGCAAAGATAGAACCCACTGAGGGACCCCAGTTTTTGTCATTTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAAGATAGAACCCACTGAGGGACCCCAGTTTTTGTCATTTGTT  796

seq1  TTTTTTTTTTTTTTTTTTTTTTTGAGACTAGACCTCACCAAGTAGCCCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTGAGACTAGACCTCACCAAGTAGCCCTG  846

seq1  GATAGCCTGGAACTTGCTGTGTAGACCTCCAGAGAAACACTTGCCTCTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTGGAACTTGCTGTGTAGACCTCCAGAGAAACACTTGCCTCTGC  896

seq1  TTCCAGGGATTAAAGGTATGTGCCATCAGGCCTCACTCCAAAGTTTTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGATTAAAGGTATGTGCCATCAGGCCTCACTCCAAAGTTTTGTT  946

seq1  TCTGTTAGTTGGTATTAAGGCAGGGTCTCAATCTGCCTCAGGGAGACCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGTTGGTATTAAGGCAGGGTCTCAATCTGCCTCAGGGAGACCAG  996

seq1  GAATTC  1001
      ||||||
seq2  GAATTC  1002

seq1: chr2_152461978_152462433
seq2: B6Ng01-137F09.g_71_526

seq1  GAATTCCATGGAACTCGGTCCATTAATCCCAGGATGGACACTAATTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAACTCGGTCCATTAATCCCAGGATGGACACTAATTTAGT  50

seq1  TCAGTGCATTCATCTTCCAAATGTGGAAAATGAAGCCCTGAGACAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCATTCATCTTCCAAATGTGGAAAATGAAGCCCTGAGACAGGCAG  100

seq1  AGAGTACTCCAGAGTCACCCAGTCAGTGAGTTTCGGGGCCCTCAAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCCAGAGTCACCCAGTCAGTGAGTTTCGGGGCCCTCAAGATCC  150

seq1  AGCCCCCTCCTCTGACCTCCCTTGGCTGTGAGGGATGAGGGACACAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTCCTCTGACCTCCCTTGGCTGTGAGGGATGAGGGACACAGTGA  200

seq1  AGCTTCCCGCCTGGCTGAGGACCCAGCTGGGTGTAGGGGTCGGGTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCGCCTGGCTGAGGACCCAGCTGGGTGTAGGGGTCGGGTCAGGA  250

seq1  GTTTCCATCTCGGGGAGGATGGGGGAGGAGGGACTGTCACAACTTTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATCTCGGGGAGGATGGGGGAGGAGGGACTGTCACAACTTTGAGA  300

seq1  AGAGAACAAGATGCAAACTGTTTAGACCACACTGCCTCATACTTCTGACA  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  AGAGAACAAGATGCAAACTGTTTAGACCACACTGCCTCATATTTCTGACT  350

seq1  CCCCTGCCTCCAACCAACTGCCCACCACCAGACTCCTGGTCCCTACACGG  400
      | ||||||||||||| |||||||||| | |||||||||||| ||||| ||
seq2  CTCCTGCCTCCAACCTACTGCCCACCTCTAGACTCCTGGTCTCTACAAGG  400

seq1  AAGTCACCCGTGACCCAGTCCAGAGGATGAGGCACAGAAAAAAAATCATA  450
      ||| ||||||||||||| ||||||||||||||||  ||||||||||||| 
seq2  AAGACACCCGTGACCCATTCCAGAGGATGAGGCATGGAAAAAAAATCATT  450

seq1  CTTCGA  456
      |||| |
seq2  CTTCTA  456