BAC Information

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BAC

Clone NameB6Ng01-137H11
Chromosome2 (Build37)
Map Location 181,275,271 - 181,428,048
singlet/doubletdoublet
Overlap geneDnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19
Upstream geneNtsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2
Downstream gene4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137H11.bB6Ng01-137H11.g
ACCDH936977DH936978
length673817
definitionDH936977|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H11, 5' end.DH936978|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,275,271 - 181,275,942)(181,427,229 - 181,428,048)
sequence
gaattcataaagatattctgcttctgcctctccagtgctgggattataaa
ggtttgagacacagtgccttgcttaattaattaattaattaaaatagaat
ttataatatagctgttgtatagcaatgtggttgtgattaatgttgctgta
tcgtatcattgaaatgataaagatggtaagtctgctaatttatcttggaa
tttagattttgaaattaaggaggtgccttgatgcacacctgtgaaggatt
atttagcttctgggcatgcctgtgagagattatactgattagtttactgg
agtgaatgccattttctagagtgaatgccattttctaggcggggatccta
tcttctactttaaacaggagaaagtgagctgagcatggatactcatggct
ccctgcttgtctgcatttgtagtatgaatagctgccttgggcacctactg
ctgtgactttcctgaaatgatggactgtagccacgagctatcagttctaa
taaaccttcatccataaaaatctgcagtttatctgtgtatccctggctgg
cttgatgtcgctgccctggaccactattttctctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttctct
tggaggggggtgtttgggttttt
gaattccttaagaaaggggtgggggcgccagagacagcaagagggaccgt
gaaggggagaccagccttccagacaaccccacctgcaaaaaagcaggaac
tgggtgggggcctaccattccacaggtgggcttgggcagctgggttcgcc
atggtgagaggccggccctgccatggaggtataggtaggacaatgacagt
gttggatggaagtgagaacggatccggtcagtcctcctcccaaaggttat
gacttttttcctggaatttttttggtctgggtgggcttgggcattctttt
tgcttctgtagagcaacactgacagccattcaccagagagcttctatccc
cagagaccagatttgctgaatctggcctcttagcatagacttgggaggcc
aatacctgggaggcttggggaggaaaggaaccctccaataggcatgtgga
gcaggacaaccctgattcagactctaggctctccttgcccagaaaggagg
cagtagtgaagagcaccctggacgacatgggtggtcccaactgacctttg
atgggtgcaaggagctagaaaaaggggcagggcacccagcgtacagaccc
catgtccagtcggctgactggagatggaccccatgaggaatggtctctac
agggtgacaggtgagggatgattttgaacagcatggagacctcaggctac
cccaccccttttctctagaaactcaactgctggaaagtacaacccaagct
actgtgtgtcctgattcgcttgcttggagacttgagaaccaccatctcag
aagcctcagttggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181275271_181275942
seq2: B6Ng01-137H11.b_48_720

seq1  GAATTCATAAAGATATTCTGCTTCTGCCTCTCCAGTGCTGGGATTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGATATTCTGCTTCTGCCTCTCCAGTGCTGGGATTATAAA  50

seq1  GGTTTGAGACACAGTGCCTTGCTTAATTAATTAATTAATTAAAATAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGACACAGTGCCTTGCTTAATTAATTAATTAATTAAAATAGAAT  100

seq1  TTATAATATAGCTGTTGTATAGCAATGTGGTTGTGATTAATGTTGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATAGCTGTTGTATAGCAATGTGGTTGTGATTAATGTTGCTGTA  150

seq1  TCGTATCATTGAAATGATAAAGATGGTAAGTCTGCTAATTTATCTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATCATTGAAATGATAAAGATGGTAAGTCTGCTAATTTATCTTGGAA  200

seq1  TTTAGATTTTGAAATTAAGGAGGTGCCTTGATGCACACCTGTGAAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTTGAAATTAAGGAGGTGCCTTGATGCACACCTGTGAAGGATT  250

seq1  ATTTAGCTTCTGGGCATGCCTGTGAGAGATTATACTGATTAGTTTACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTTCTGGGCATGCCTGTGAGAGATTATACTGATTAGTTTACTGG  300

seq1  AGTGAATGCCATTTTCTAGAGTGAATGCCATTTTCTAGGCGGGGATCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGCCATTTTCTAGAGTGAATGCCATTTTCTAGGCGGGGATCCTA  350

seq1  TCTTCTACTTTAAACAGGAGAAAGTGAGCTGAGCATGGATACTCATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTTAAACAGGAGAAAGTGAGCTGAGCATGGATACTCATGGCT  400

seq1  CCCTGCTTGTCTGCATTTGTAGTATGAATAGCTGCCTTGGGCACCTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTGTCTGCATTTGTAGTATGAATAGCTGCCTTGGGCACCTACTG  450

seq1  CTGTGACTTTCCTGAAATGATGGACTGTAGCCACGAGCTATCAGTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTTCCTGAAATGATGGACTGTAGCCACGAGCTATCAGTTCTAA  500

seq1  TAAACCTTCATCCATAAAAATCTGCAGTTTATCTGTGTATCCCTGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTCATCCATAAAAATCTGCAGTTTATCTGTGTATCCCTGGCTGG  550

seq1  CTTGATGTCGCTGCCCTGGACCACTATTTTCTCTTTCTTTCTTTCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTCGCTGCCCTGGACCACTATTTTCTCTTTCTTTCTTTCTTTCT  600

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCT  650

seq1  TGGAGGGGGGTG-TTGGGTTTTT  672
      |||||||||||| ||||||||||
seq2  TGGAGGGGGGTGTTTGGGTTTTT  673

seq1: chr2_181427229_181428048
seq2: B6Ng01-137H11.g_67_883 (reverse)

seq1  TTCACCACCTGAGGCTTTCTGAGATGGTGGGTTCTCAAGTCTCCAAGCAA  50
      ||||||| ||||||| |||||||||||| |||||||||||||||||||||
seq2  TTCACCAACTGAGGC-TTCTGAGATGGT-GGTTCTCAAGTCTCCAAGCAA  48

seq1  GCGAATCAGGACACACAAGTAGCTTGGGTTGTACTTTCCAGCAGTTGAGT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCGAATCAGGACACAC-AGTAGCTTGGGTTGTACTTTCCAGCAGTTGAGT  97

seq1  TTCTAGGGAAAAGGGGTGGGGTAGCCTGAGGTCTCCATGCTGTTCAAAAT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGAAAAGGGGTGGGGTAGCCTGAGGTCTCCATGCTGTTCAAAAT  147

seq1  CATCCCTCACCTGTCACCCTGTAGAGACCATTCCTCATGGGGTCCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCACCTGTCACCCTGTAGAGACCATTCCTCATGGGGTCCATCTC  197

seq1  CAGTCAGCCGACTGGACATGGGGTCTGTACGCTGGGTGCCCTGCCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCCGACTGGACATGGGGTCTGTACGCTGGGTGCCCTGCCCCTTT  247

seq1  TTCTAGCTCCTTGCACCCATCAAAGGTCAGTTGGGACCACCCATGTCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTCCTTGCACCCATCAAAGGTCAGTTGGGACCACCCATGTCGTC  297

seq1  CAGGGTGCTCTTCACTACTGCCTCCTTTCTGGGCAAGGAGAGCCTAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGCTCTTCACTACTGCCTCCTTTCTGGGCAAGGAGAGCCTAGAGT  347

seq1  CTGAATCAGGGTTGTCCTGCTCCACATGCCTATTGGAGGGTTCCTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAGGGTTGTCCTGCTCCACATGCCTATTGGAGGGTTCCTTTCCT  397

seq1  CCCCAAGCCTCCCAGGTATTGGCCTCCCAAGTCTATGCTAAGAGGCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGCCTCCCAGGTATTGGCCTCCCAAGTCTATGCTAAGAGGCCAGA  447

seq1  TTCAGCAAATCTGGTCTCTGGGGATAGAAGCTCTCTGGTGAATGGCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAATCTGGTCTCTGGGGATAGAAGCTCTCTGGTGAATGGCTGTC  497

seq1  AGTGTTGCTCTACAGAAGCAAAAAGAATGCCCAAGCCCACCCAGACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGCTCTACAGAAGCAAAAAGAATGCCCAAGCCCACCCAGACCAAA  547

seq1  AAAATTCCAGGAAAAAAGTCATAACCTTTGGGAGGAGGACTGACCGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAGGAAAAAAGTCATAACCTTTGGGAGGAGGACTGACCGGATC  597

seq1  CGTTCTCACTTCCATCCAACACTGTCATTGTCCTACCTATACCTCCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCACTTCCATCCAACACTGTCATTGTCCTACCTATACCTCCATGG  647

seq1  CAGGGCCGGCCTCTCACCATGGCGAACCCAGCTGCCCAAGCCCACCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCGGCCTCTCACCATGGCGAACCCAGCTGCCCAAGCCCACCTGTG  697

seq1  GAATGGTAGGCCCCCACCCAGTTCCTGCTTTTTTGCAGGTGGGGTTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTAGGCCCCCACCCAGTTCCTGCTTTTTTGCAGGTGGGGTTGTCT  747

seq1  GGAAGGCTGGTCTCCCCTTCACGGTCCCTCTTGCTGTCTCTGGCGCCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTGGTCTCCCCTTCACGGTCCCTCTTGCTGTCTCTGGCGCCCCC  797

seq1  ACCCCTTTCTTAAGGAATTC  820
      ||||||||||||||||||||
seq2  ACCCCTTTCTTAAGGAATTC  817