BAC Information

Click to search

BAC

Clone NameB6Ng01-138C20
Chromosome2 (Build37)
Map Location 143,299,816 - 143,390,611
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C20.bB6Ng01-138C20.g
ACCDH937508DH937509
length1,164529
definitionDH937508|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C20, 5' end.DH937509|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,389,450 - 143,390,611)(143,299,816 - 143,300,350)
sequence
gaattcctccatatctaagaatagtttagtattacaaatagctgagaaat
tataaacagtggtaggtcttcaaacactcagctgagtgccccagtaggaa
acttctcatattaggcatctcatacatgtttaaatgactttctttctaga
aacgcacacatgcacacacacactcacagacttacacacaaatgtatgta
aataatatacacactcacacagactcacacaaacatgcctttgtgcgcac
gcacacacacatacacacatagactcacacgcatgtgcatgcacacacac
attgtttttctgtgctatcactttattctcttaaggtcacgattccagaa
ggaaggagaaaatgagtgggaagagacttcacagccatccatcaggttgc
agacgcaggctgggtaccaatataataacgccactaactcagacttttag
agagccaagaattctcattatgtgcactccaagctgaagcatttatttga
acctacacacttgcttctcccaggaccagggaaccccagattgagaggca
gcgctttctgactggggttagacctgcctcctttgaagccagagtcctct
gcttagatgatgcatgggtgctccagaaatggtgtgttcttggctctgtc
cgcaaatggtgcccttctgtgcatcttagaagtgacttctgtcatctggg
atccagcactttccaaatgaaggcctgtcttgcagccttgctgtcaaaag
ctgcttttcctgatggcttccttgaatttgctgcccccaacacccccacc
ccacccctccctgcttacttttttgacctttggctgggtttgactgggtg
tctggtttgggggtaagcccaggagtcagtctacgtctgaacactcttac
aattctgtccttgagaagctactgtcaagatgtttcagaaatgaaactgg
gagataaaacaatacagccaggattgtaaagtggatctgctggtaagtat
ttgtccattatattcgggggattgcatttaacaaaacaggatggggctgc
atttttctgatatttgcagaggattacttagattttcttaaatatacata
atgctaagaacaagaacataatacttctgcaggagaaatgtagaaaaaga
gaaccagtggagac
tctgaattaactcactgttcaagttcttcttggtcctgttcacagagact
cttatccaatggtcaaagtgtgaacaaatggatttgtatattccatgaaa
aattttaatatgtggacaagtttgaagattgctatataacattgcttctc
cagtggtactgtatacacctgagagtgtgtattggtgaaatacagatggt
gttctctaagtctgctggattcccagttaaaagggcctagcaaacacaga
agtggatgctcacagtcagctaatggatggatcacagggctcccaatgga
ggagctagagaaagtacccaaggagctaaagggatctgcaaccctatagg
tggaacaacattatgaactaaccagtaccccggagctcttgactctagct
gcatatgtatcaaaagatggcctagtcggccatcactggaaagagaggcg
cattggacacgcaaactttatatgccccagtacaggggaacgccagggcc
aaaacgggggagtgggtgggtaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143389450_143390611
seq2: B6Ng01-138C20.b_48_1211 (reverse)

seq1  GTCTCCACTGGT--TCTTTTTCTACATCTCTCCTGCAG-AGTATTATG-T  46
      ||||||||||||  ||||||||||||| |||||||||| ||||||||| |
seq2  GTCTCCACTGGTTCTCTTTTTCTACATTTCTCCTGCAGAAGTATTATGTT  50

seq1  CTTG-TCTTAGCATTATGTATAATTAAGGAAAATCTAAAGTAAT-CTCTG  94
      |||| ||||||||||||||||| |||| |||||||| ||||||| |||||
seq2  CTTGTTCTTAGCATTATGTATATTTAA-GAAAATCT-AAGTAATCCTCTG  98

seq1  CAAATTATCAGAAAAATGCAGGCCCCATCCCTGTTTGTTAAATGCAATCC  144
      |||| ||||||||||||||| |||||||||   |||||||||||||||||
seq2  CAAA-TATCAGAAAAATGCA-GCCCCATCCTGTTTTGTTAAATGCAATCC  146

seq1  CCCGAATATAATGGACAAATACTTACCAGCAGATCCACTTTACAATCCTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATATAATGGACAAATACTTACCAGCAGATCCACTTTACAATCCTG  196

seq1  GCTGTATTGTTTTATCTCCCAGTTTCATTTCTGAAACATCTTGACAGTAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTGTTTTATCTCCCAGTTTCATTTCTGAAACATCTTGACAGTAG  246

seq1  CTTCTCAAGGACAGAATTGTAAGAGTGTTCAGACGTAGACTGACTCCTGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGGACAGAATTGTAAGAGTGTTCAGACGTAGACTGACTCCTGG  296

seq1  GCTTACCCCCAAACCAGACACCCAGTCAAACCCAGCCAAAGGTCAAAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCCCCAAACCAGACACCCAGTCAAACCCAGCCAAAGGTCAAAAAA  346

seq1  GTAAGCAGGGAGGGGTGGGGTGGGGGTGTTGGGGGCAGCAAATTCAAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGGGAGGGGTGGGGTGGGGGTGTTGGGGGCAGCAAATTCAAGGA  396

seq1  AGCCATCAGGAAAAGCAGCTTTTGACAGCAAGGCTGCAAGACAGGCCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAGGAAAAGCAGCTTTTGACAGCAAGGCTGCAAGACAGGCCTTC  446

seq1  ATTTGGAAAGTGCTGGATCCCAGATGACAGAAGTCACTTCTAAGATGCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAGTGCTGGATCCCAGATGACAGAAGTCACTTCTAAGATGCAC  496

seq1  AGAAGGGCACCATTTGCGGACAGAGCCAAGAACACACCATTTCTGGAGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCACCATTTGCGGACAGAGCCAAGAACACACCATTTCTGGAGCA  546

seq1  CCCATGCATCATCTAAGCAGAGGACTCTGGCTTCAAAGGAGGCAGGTCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCATCATCTAAGCAGAGGACTCTGGCTTCAAAGGAGGCAGGTCTA  596

seq1  ACCCCAGTCAGAAAGCGCTGCCTCTCAATCTGGGGTTCCCTGGTCCTGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTCAGAAAGCGCTGCCTCTCAATCTGGGGTTCCCTGGTCCTGGG  646

seq1  AGAAGCAAGTGTGTAGGTTCAAATAAATGCTTCAGCTTGGAGTGCACATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGTGTGTAGGTTCAAATAAATGCTTCAGCTTGGAGTGCACATA  696

seq1  ATGAGAATTCTTGGCTCTCTAAAAGTCTGAGTTAGTGGCGTTATTATATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTCTTGGCTCTCTAAAAGTCTGAGTTAGTGGCGTTATTATATT  746

seq1  GGTACCCAGCCTGCGTCTGCAACCTGATGGATGGCTGTGAAGTCTCTTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCAGCCTGCGTCTGCAACCTGATGGATGGCTGTGAAGTCTCTTCC  796

seq1  CACTCATTTTCTCCTTCCTTCTGGAATCGTGACCTTAAGAGAATAAAGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTTTCTCCTTCCTTCTGGAATCGTGACCTTAAGAGAATAAAGTG  846

seq1  ATAGCACAGAAAAACAATGTGTGTGTGCATGCACATGCGTGTGAGTCTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAGAAAAACAATGTGTGTGTGCATGCACATGCGTGTGAGTCTAT  896

seq1  GTGTGTATGTGTGTGTGCGTGCGCACAAAGGCATGTTTGTGTGAGTCTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGTGTGCGTGCGCACAAAGGCATGTTTGTGTGAGTCTGT  946

seq1  GTGAGTGTGTATATTATTTACATACATTTGTGTGTAAGTCTGTGAGTGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTATATTATTTACATACATTTGTGTGTAAGTCTGTGAGTGTG  996

seq1  TGTGTGCATGTGTGCGTTTCTAGAAAGAAAGTCATTTAAACATGTATGAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGTGTGCGTTTCTAGAAAGAAAGTCATTTAAACATGTATGAG  1046

seq1  ATGCCTAATATGAGAAGTTTCCTACTGGGGCACTCAGCTGAGTGTTTGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAATATGAGAAGTTTCCTACTGGGGCACTCAGCTGAGTGTTTGAA  1096

seq1  GACCTACCACTGTTTATAATTTCTCAGCTATTTGTAATACTAAACTATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACCACTGTTTATAATTTCTCAGCTATTTGTAATACTAAACTATTC  1146

seq1  TTAGATATGGAGGAATTC  1162
      ||||||||||||||||||
seq2  TTAGATATGGAGGAATTC  1164

seq1: chr2_143299816_143300350
seq2: B6Ng01-138C20.g_66_600

seq1  GAATTCTCTGAATTAACTCACTGTTCAAGTTCTTCTTGGTCCTGTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAATTAACTCACTGTTCAAGTTCTTCTTGGTCCTGTTCACA  50

seq1  GAGACTCTTATCCAATGGTCAAAGTGTGAACAAATGGATTTGTATATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTTATCCAATGGTCAAAGTGTGAACAAATGGATTTGTATATTCC  100

seq1  ATGAAAAATTTTAATATGTGGACAAGTTTGAAGATTGCTATATAACATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTTTAATATGTGGACAAGTTTGAAGATTGCTATATAACATTG  150

seq1  CTTCTCCAGTGGTACTGTATACACCTGAGAGTGTGTATTGGTGAAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAGTGGTACTGTATACACCTGAGAGTGTGTATTGGTGAAATACA  200

seq1  GATGGTGTTCTCTAAGTCTGCTGGATTCCCAGTTAAAAGGGCCTAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTTCTCTAAGTCTGCTGGATTCCCAGTTAAAAGGGCCTAGCAAA  250

seq1  CACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCC  300

seq1  AATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCC  350

seq1  TATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACT  400

seq1  CTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGA  450

seq1  GAGGCGCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCC  500

seq1  AGGGCCAAAACGGGGGAGTGGGTGGGTAGGGGAGT  535
      |||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAAACGGGGGAGTGGGTGGGTAGGGGAGT  535