BAC Information

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BAC

Clone NameB6Ng01-138G17
Chromosome2 (Build37)
Map Location 40,205,165 - 40,206,404
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps2_560.1, LOC100042604, Magmas-ps
Downstream geneLOC666531, Lrp1b, LOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138G17.bB6Ng01-138G17.g
ACCDH937685DH937686
length1,200706
definitionDH937685|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G17, 5' end.DH937686|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacaaataactttgacaatgtatatagcgcttggaataatgcct
ccataacttatcataaatcatattgagactcttattcttagaagttttat
gtgggatttgtcttcctagtttcctccttgttaaaaaaagaaatgtagaa
ataaatattaaattatcttatgcattttgagtggttgaaaatataaacaa
tgtggtagatatcagcaaataaaagcattattatctgggttttccttcca
tacccaatgaacttaaaaattatgtcaagtattgcatacagttaaagtta
ttaggaaagtcaaattttatatatcatgtgtcatgtatcatatatttata
catcatatattttagtaatcattattaattttcatgccttaaaatatgtt
ttgaatgctgatgacactctgttccatccactgtgccatattttttagcg
ggaaaacacttgaaccagttagtgaggataaatcaggccctatatagatg
tcttagctaagtttgtttttactggtgataaaataccataacaaaaaata
agttaggtgaaaagggttcatttggcttatatttccccacatcagagttg
atcatcaaaatatcaggacagaaacttaaccaggacaggaaccttgagga
agggcctgatctgatgcaaaggccatgaaggtatatttcttactttcttg
ttcctcatgtcttactcagcctgcttatagaacccacaatcagcagccaa
gggatagcatcacccataatgtcctgaacagtctcctatcaatcactaat
taaaaaattcaccatagtgttatctttatcccaatcacatagagacattt
ttttcaatggaggctcccacctctctgatgatttcagtgaccttgacata
aaactagccaggactctgagtactctttctacctcatgattttaacctga
agtttatacattttgttgaaatataatacaatatttaagaaaatttccta
atgtaaataaaacattttacaaagtcttcatctattttttatatccttcg
aatgttttgaatttattgttcaggcgtatgtttcatatatttaaatacaa
aattcttcaactgtaagtctatactatatactgcagctttatacgaaaga
agtcaccttagaacttaaagtctattcttgcactaaagtagttactgaaa


gaattctgggggtgagattaatagtcgttcctacagaaaagcacacaaag
tagttatcaaataccaaatagctctaaaaacatatgtacaataaaattat
acagttgaagaaaaaccaaagtgtggatactttgattcttctaagaagga
ggaacaatatacctagggaaggagttacagagacaaaggagcagagactg
aaggaatgaccatccagagactgccccacctggggatccatccaataaac
aaccaccaaacccagacactattgcaactgccaaaaagatgttgctgaca
ggagcctgatatagctgttctgccagtgcctggcaaataaaggagtagat
gctcacagtcatccattgaacagagcataggatccccaatgaaggagcca
gagaaagtactcaaggagcgaaggggtttgcagcagcatagaggaacaac
aataagaactaaccagtaaccccagagttccctgggactaaaccaccaat
caaaaaaaccaaaccaaacaaacaaacaaacaaacaaaagactcatggtg
ggactcatgtctttagctgcatatgtagcagaggatggcctagtcggtca
tcaattggaggagaggcccttggtcctgtgaagtttctatgccccagtat
aggggaatgcctgtgccaggatgaatgcataggttggggaatagggggag
gggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40205165_40206404
seq2: B6Ng01-138G17.b_45_1244 (reverse)

seq1  TTTCAGTAACCATCACTCTTAGTTGCAAGAATAGGACTGTTATGATTCCT  50
      ||||||||||    ||| |||| |||||||||| |||| |||  | | ||
seq2  TTTCAGTAAC---TACT-TTAG-TGCAAGAATA-GACT-TTA--AGTTCT  41

seq1  ACAGCTGAACCTATCCCTTTCCTATATAAAGCTGCAGTTTATCTAGTTAA  100
      | || |||  ||    |||||   |||||||||||||  ||| ||||  |
seq2  A-AGGTGA--CT---TCTTTC--GTATAAAGCTGCAG--TATATAGT--A  79

seq1  TAGAAACCTAACAGTTTGAAAGAACTTTGTATCTAAATTATATGAAACAT  150
      ||||   || ||||||   ||||| ||||||| |||| ||||||||||||
seq2  TAGA---CTTACAGTT--GAAGAATTTTGTATTTAAA-TATATGAAACAT  123

seq1  AACGCTTGAAACAATAAATTCAAAACATTCTGAAGGATATAAAAAATAGA  200
       |||| || ||||||||||||||||||||| |||||||||||||||||||
seq2  -ACGCCTG-AACAATAAATTCAAAACATTC-GAAGGATATAAAAAATAGA  170

seq1  TGAAGACCTTTGTAAAAATGTTATATTTTACATTAGGAAATATTTCTTTA  250
      |||||| |||||| |||||||| || ||||||||||||||| |||| |||
seq2  TGAAGA-CTTTGT-AAAATGTTTTA-TTTACATTAGGAAAT-TTTC-TTA  215

seq1  AATATTGTATTATATTTCAACAAAATTGTATAAACCTTCAGGTTAAAACT  300
      ||||||||||||||||||||||||| |||||||| ||||||||||||| |
seq2  AATATTGTATTATATTTCAACAAAA-TGTATAAA-CTTCAGGTTAAAA-T  262

seq1  CATGAGGTAGAAAGAGTACTTCAGAGTCCTGGCTAGTTTTATGTCAAGGT  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGAGGTAGAAAGAGTAC-TCAGAGTCCTGGCTAGTTTTATGTCAAGGT  311

seq1  CACTGAAATCATCAGAGAGGTGGGAGCCTCCATTGAAAAAAATGTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATCATCAGAGAGGTGGGAGCCTCCATTGAAAAAAATGTCTCTA  361

seq1  TGTGATTGGGATAAAGATAACACTATGGTGAATTTTTTTAATTAGTGATT  450
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGATTGGGATAAAGATAACACTATGGTGAA-TTTTTTAATTAGTGATT  410

seq1  GATAGGAGACTGTTCAGGACATTATGGGTGATGCTATCCCTTGGCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGACTGTTCAGGACATTATGGGTGATGCTATCCCTTGGCTGCTG  460

seq1  ATTGTGGGTTCTATAAGCAGGCTGAGTAAGACATGAGGAACAAGAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGTTCTATAAGCAGGCTGAGTAAGACATGAGGAACAAGAAAGTA  510

seq1  AGAAATATACCTTCATGGCCTTTGCATCAGATCAGGCCCTTCCTCAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATACCTTCATGGCCTTTGCATCAGATCAGGCCCTTCCTCAAGGT  560

seq1  TCCTGTCCTGGTTAAGTTTCTGTCCTGATATTTTGATGATCAACTCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCTGGTTAAGTTTCTGTCCTGATATTTTGATGATCAACTCTGAT  610

seq1  GTGGGGAAATATAAGCCAAATGAACCCTTTTCACCTAACTTATTTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAATATAAGCCAAATGAACCCTTTTCACCTAACTTATTTTTTGT  660

seq1  TATGGTATTTTATCACCAGTAAAAACAAACTTAGCTAAGACATCTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATTTTATCACCAGTAAAAACAAACTTAGCTAAGACATCTATATA  710

seq1  GGGCCTGATTTATCCTCACTAACTGGTTCAAGTGTTTTCCCGCTAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGATTTATCCTCACTAACTGGTTCAAGTGTTTTCCCGCTAAAAAA  760

seq1  TATGGCACAGTGGATGGAACAGAGTGTCATCAGCATTCAAAACATATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCACAGTGGATGGAACAGAGTGTCATCAGCATTCAAAACATATTTT  810

seq1  AAGGCATGAAAATTAATAATGATTACTAAAATATATGATGTATAAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGAAAATTAATAATGATTACTAAAATATATGATGTATAAATATA  860

seq1  TGATACATGACACATGATATATAAAATTTGACTTTCCTAATAACTTTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGACACATGATATATAAAATTTGACTTTCCTAATAACTTTAAC  910

seq1  TGTATGCAATACTTGACATAATTTTTAAGTTCATTGGGTATGGAAGGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAATACTTGACATAATTTTTAAGTTCATTGGGTATGGAAGGAAA  960

seq1  ACCCAGATAATAATGCTTTTATTTGCTGATATCTACCACATTGTTTATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATAATAATGCTTTTATTTGCTGATATCTACCACATTGTTTATAT  1010

seq1  TTTCAACCACTCAAAATGCATAAGATAATTTAATATTTATTTCTACATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACCACTCAAAATGCATAAGATAATTTAATATTTATTTCTACATTT  1060

seq1  CTTTTTTTAACAAGGAGGAAACTAGGAAGACAAATCCCACATAAAACTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAACAAGGAGGAAACTAGGAAGACAAATCCCACATAAAACTTC  1110

seq1  TAAGAATAAGAGTCTCAATATGATTTATGATAAGTTATGGAGGCATTATT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATAAGAGTCTCAATATGATTTATGATAAGTTATGGAGGCATTATT  1160

seq1  CCAAGCGCTATATACATTGTCAAAGTTATTTGTAGAATTC  1240
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGCTATATACATTGTCAAAGTTATTTGTAGAATTC  1200


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