BAC Information

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BAC

Clone NameB6Ng01-138I05
Chromosome2 (Build37)
Map Location 29,202,981 - 29,317,070
singlet/doubletdoublet
Overlap geneCrsp8
Upstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I05.bB6Ng01-138I05.g
ACCDH937753DH937754
length9421,054
definitionDH937753|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I05, 5' end.DH937754|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,316,127 - 29,317,070)(29,202,981 - 29,204,053)
sequence
gaattcctcctagcatggtacttgggagagagggcaggcagctcacttac
gcaagatcctgcagtgggttagtgcaaggtgtgctagagtaagcagacca
gacttcggttcagatctgtgctgggtctcttcactgacccctctgtactg
cactgtgcttgggaagctggcccacaccaagaggacgccaactagacttt
tggtcaacagcaagtgctggctggggagcactgggctggctaaaaggctg
tagaactgcacttctcagtgtctgctaaatcccaccatccagtagagtca
cagcggcatggcaaggtcacacggactgggtggctttgtccccacagcag
aaaggtggcagtagccagttcctgctcacctttgtgacaatccccaccca
cacatcctcttcagcttacacacaaagcattaggtggaggtctcctctgg
gggatggaccctgataggtgatatcatgtgtactatacccataggcttct
ctgctctttacctgtgtttggccaaatgaggtatcctggttgttgtcatc
gtcattattattattgcttttgtgtgtgtgtgtgtgtgtgtgtgtggtca
acttgacacaagctggagtcatctgggaacagatctcaactgagaaaatg
cttcaatcagattggcttgtaggcaaactggagagtgttttctctattaa
tggctgatatggagggccagcgcactgagtaaagccaaggggagcaagcc
agtaagcgttgctcctccatgacctctgcttcagctcctgccttgagtac
ctggcctgattttcctcagtgatggagtgacctgagagttgtaagctgaa
atagacggttttctctttaacttgcttttggtcataggtgaagctcacta
ggacagaagcccggagaggacgtgtgggtgtgggagggaaga
gaattcatcagttccacctcacctcattctcagactacctccgttacctt
tgcctctttccatttcccctccgaagccacctgctcctcactgccagtca
ccatcattccttttgtttagctcttttctcgagagatacagtcttacatc
tattaggatgtttaagaggaagaatttatttaggttcagtttcagaggac
tcagttcactacaacgggaaaggaatgtttgagcaggttaacccctaata
attggggattacatatttccctcacgggactccttttacatcattagtgt
attaagagtttgctgagaagacattactcagatgccatgcatagaaggca
ctttggattttgagacagggattctcagggtaacagtcttggttgtcctg
gaattcaatttgtagaccaggatggcctcaaactcacaagagatcctcct
gcctctgcctctctggattaatctgctgggattaaaggtgtgtgccacca
cacacagtttagtaggcatgtcttctgtgcctgaacttgtgttttcttcc
tgtcttagaaattagaatggaaggacttgaggtctcccccccccccccca
gacagggtttctctgtatagccctggctgtcctggaactcactctgtaga
ccaggctggcctcaaactcagaaatctgcctgcctctgcctccggagtgc
tgggattaaaggcgtgcaccaccacgcccggcttggatttgagcttttta
cttctgaaattgagcatttggtgatctggtcaggttgggtttcctctctt
ccacctcatgttcctctatagtgcctggttccagctccgtgccttctgtg
tgtcaggcaggcaaaccccaggactcccttccacccatcaactagtcaag
tagatggaggagaagtagtgaagtgtgtgtgcctttctcccgtattcact
cctcttaactacacacatactgttctgtcagctgacatggcatgctaccc
cactcatgactccccgagggaggcttttttccccctaagacagaagttct
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29316127_29317070
seq2: B6Ng01-138I05.b_48_989 (reverse)

seq1  TCTTCCCCTCCCACACCCACACGTCCTCTCCGGGCTTCCTGTCCTAGTGA  50
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTT-CCCTCCCACACCCACACGTCCTCTCCGGGCTT-CTGTCCTAGTGA  48

seq1  GCTTCACCTATGACCAAAAGCAAGTTAAAGAGAAAACCGTCTATTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACCTATGACCAAAAGCAAGTTAAAGAGAAAACCGTCTATTTCAGC  98

seq1  TTACAACTCTCAGGTCACTCCATCACTGAGGAAAATCAGGCCAGGTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTCTCAGGTCACTCCATCACTGAGGAAAATCAGGCCAGGTACTC  148

seq1  AAGGCAGGAGCTGAAGCAGAGGTCATGGAGGAGCAACGCTTACTGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAGCTGAAGCAGAGGTCATGGAGGAGCAACGCTTACTGGCTTG  198

seq1  CTCCCCTTGGC-TTACTCAGTGCGCTGGCCCTCCATATCAGCCATTAATA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTGGCTTTACTCAGTGCGCTGGCCCTCCATATCAGCCATTAATA  248

seq1  GAGAAAACACTCTCCAGTTTTGCCTACAAGCCAATCTGATTGAAGCATTT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGAAAACACTCTCCAG-TTTGCCTACAAGCCAATCTGATTGAAGCATTT  297

seq1  TCTCAGTTGAGATCTGTTCCCAGATGACTCCAGCTTGTGTCAAGTTGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTGAGATCTGTTCCCAGATGACTCCAGCTTGTGTCAAGTTGACC  347

seq1  ACACACACACACACACACACACACAAAAGCAATAATAATAATGACGATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAAAAGCAATAATAATAATGACGATGA  397

seq1  CAACAACCAGGATACCTCATTTGGCCAAACACAGGTAAAGAGCAGAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCAGGATACCTCATTTGGCCAAACACAGGTAAAGAGCAGAGAAG  447

seq1  CCTATGGGTATAGTACACATGATATCACCTATCAGGGTCCATCCCCCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGTATAGTACACATGATATCACCTATCAGGGTCCATCCCCCAGA  497

seq1  GGAGACCTCCACCTAATGCTTTGTGTGTAAGCTGAAGAGGATGTGTGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTCCACCTAATGCTTTGTGTGTAAGCTGAAGAGGATGTGTGGGT  547

seq1  GGGGATTGTCACAAAGGTGAGCAGGAACTGGCTACTGCCACCTTTCTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGTCACAAAGGTGAGCAGGAACTGGCTACTGCCACCTTTCTGCT  597

seq1  GTGGGGACAAAGCCACCCAGTCCGTGTGACCTTGCCATGCCGCTGTGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGACAAAGCCACCCAGTCCGTGTGACCTTGCCATGCCGCTGTGACT  647

seq1  CTACTGGATGGTGGGATTTAGCAGACACTGAGAAGTGCAGTTCTACAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGATGGTGGGATTTAGCAGACACTGAGAAGTGCAGTTCTACAGCC  697

seq1  TTTTAGCCAGCCCAGTGCTCCCCAGCCAGCACTTGCTGTTGACCAAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCAGCCCAGTGCTCCCCAGCCAGCACTTGCTGTTGACCAAAAGT  747

seq1  CTAGTTGGCGTCCTCTTGGTGTGGGCCAGCTTCCCAAGCACAGTGCAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGGCGTCCTCTTGGTGTGGGCCAGCTTCCCAAGCACAGTGCAGTA  797

seq1  CAGAGGGGTCAGTGAAGAGACCCAGCACAGATCTGAACCGAAGTCTGGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGTCAGTGAAGAGACCCAGCACAGATCTGAACCGAAGTCTGGTC  847

seq1  TGCTTACTCTAGCACACCTTGCACTAACCCACTGCAGGATCTTGCGTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTCTAGCACACCTTGCACTAACCCACTGCAGGATCTTGCGTAAG  897

seq1  TGAGCTGCCTGCCCTCTCTCCCAAGTACCATGCTAGGAGGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCTGCCCTCTCTCCCAAGTACCATGCTAGGAGGAATTC  942

seq1: chr2_29202981_29204053
seq2: B6Ng01-138I05.g_67_1120

seq1  GAATTCATCAGTTCCACCTCACCTCATTCTCAGACTACCTCCGTTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTCCACCTCACCTCATTCTCAGACTACCTCCGTTACCTT  50

seq1  TGCCTCTTTCCATTTCCCCTCCGAAGCCACCTGCTCCTCACTGCCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTTCCATTTCCCCTCCGAAGCCACCTGCTCCTCACTGCCAGTCA  100

seq1  CCATCATTCCTTTTGTTTAGCTCTTTTCTCGAGAGATACAGTCTTACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTCCTTTTGTTTAGCTCTTTTCTCGAGAGATACAGTCTTACATC  150

seq1  TATTAGGATGTTTAAGAGGAAGAATTTATTTAGGTTCAGTTTCAGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGATGTTTAAGAGGAAGAATTTATTTAGGTTCAGTTTCAGAGGAC  200

seq1  TCAGTTCACTACAACGGGAAAGGAATGTTTGAGCAGGTTAACCCCTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCACTACAACGGGAAAGGAATGTTTGAGCAGGTTAACCCCTAATA  250

seq1  ATTGGGGATTACATATTTCCCTCACGGGACTCCTTTTACATCATTAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGATTACATATTTCCCTCACGGGACTCCTTTTACATCATTAGTGT  300

seq1  ATTAAGAGTTTGCTGAGAAGACATTACTCAGATGCCATGCATAGAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGTTTGCTGAGAAGACATTACTCAGATGCCATGCATAGAAGGCA  350

seq1  CTTTGGATTTTGAGACAGGGATTCTCAGGGTAACAGTCTTGGTTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTTTGAGACAGGGATTCTCAGGGTAACAGTCTTGGTTGTCCTG  400

seq1  GAATTCAATTTGTAGACCAGGATGGCCTCAAACTCACAAGAGATCCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTGTAGACCAGGATGGCCTCAAACTCACAAGAGATCCTCCT  450

seq1  GCCTCTGCCTCTCTGGATTAATCTGCTGGGATTAAAGGTGTGTGCCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCTCTGGATTAATCTGCTGGGATTAAAGGTGTGTGCCACCA  500

seq1  CACACAGTTTAGTAGGCATGTCTTCTGTGCCTGAACTTGTGTTTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTTTAGTAGGCATGTCTTCTGTGCCTGAACTTGTGTTTTCTTCC  550

seq1  TGTCTTAGAAATTAGAATGGAAGGACTTGAGGTCT-CCCCCCCCCCCCCA  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTCTTAGAAATTAGAATGGAAGGACTTGAGGTCTCCCCCCCCCCCCCCA  600

seq1  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  650

seq1  CCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCGGAGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCGGAGTGC  700

seq1  TGGGATTAAAGGCGTGCACCACCACGCCCGGCTTGGATTTGAGCTTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGCACCACCACGCCCGGCTTGGATTTGAGCTTTTTA  750

seq1  CTTCTGAAATTGAGCATTTGGTGATCTGGTCAGGTTGGGTTTCCTCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAATTGAGCATTTGGTGATCTGGTCAGGTTGGGTTTCCTCTCTT  800

seq1  CCACCTCATGTTCCTCTATAGTGCCTGGTTCCAGCTCCGTGCCTTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCATGTTCCTCTATAGTGCCTGGTTCCAGCTCCGTGCCTTCTGTG  850

seq1  TGTCAGGCAGGCAAACCCCCAGGACTCCC-TCCACCCATCAACTAGTCAA  898
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TGTCAGGCAGGCAAA-CCCCAGGACTCCCTTCCACCCATCAACTAGTCAA  899

seq1  GTAGGATGGAGGAGGAAGTAGTGAAGTGTTGTGTGCCTTTCCTCCCCGTA  948
      ||| ||||||||| |||||||||||||| ||||||||||||   ||||||
seq2  GTA-GATGGAGGA-GAAGTAGTGAAGTG-TGTGTGCCTTTC--TCCCGTA  944

seq1  TTCCACTCCCTCCTTAAACTACACACATACCTGTTCTGTCAGCTTGACAA  998
      || |||| ||||  | ||||||||||||| ||||||||||||| |||| |
seq2  TT-CACT-CCTC--TTAACTACACACATA-CTGTTCTGTCAGC-TGAC-A  987

seq1  TGGCATGCCCTACCCCCACTCCATTGACTCCCCCGAGGGAGGCTTTTTTC  1048
      |||||||  ||| ||||||||   ||||| ||||||||||||||||||| 
seq2  TGGCATG--CTA-CCCCACTC--ATGACT-CCCCGAGGGAGGCTTTTTT-  1030

seq1  CCCCCCTAAGACAGAGTTTCTTTTT  1073
       ||||||||||||||  ||||||||
seq2  -CCCCCTAAGACAGAAGTTCTTTTT  1054