BAC Information

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BAC

Clone NameB6Ng01-138I14
Chromosome2 (Build37)
Map Location 67,276,567 - 67,401,154
singlet/doubletdoublet
Overlap geneCmya3
Upstream geneScn1a, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneLOC621171, LOC227995, B3galt1, Stk39, LOC100039683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I14.bB6Ng01-138I14.g
ACCDH937769DH937770
length1,0991,089
definitionDH937769|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I14, 5' end.DH937770|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,276,567 - 67,277,687)(67,400,042 - 67,401,154)
sequence
gaattctgcgttccgtggagagggcctgaatcagctgctgctctcccggc
tgctgcctctgctgctgctgggttatcttgctgttacatttcttgctgcg
tttgctgttgccggactggcagattcttgatttgctggtttgctggactg
ctggatattctgaccacaaagatcagactcaccctaaggaccctgactgc
cctaatcagcaggaagtagcctagagagaggtctattaatcctttcccct
ctaaccttatttctctcctacctagggttaggcggttggaagaaattagg
gtgaaataatagttgaatggtaaaggtataagaacccaacaaaataataa
acaaatatgccaacagtcatctataactaattgtgcagtctcatatgttt
tgccattgttggtaaactgtgacaccagtcttgtcataatagactgccta
cattctccagccattccactcctaacttctatgagaccaatttttttata
ttttctagttagttcaagattatgtaatcttaagagctattctatttacg
tccctcatcgagcagatgagcaatgctatctgaatttatttattttttat
atttattggccaaaattggtacatgtggcatttctttcagataggtataa
cagtttgtcttattctactgtcactaaatacatcctacaacttcaatata
catgtttttcttctcttttctttcagttacactcaaattctttaatattc
gaggccttaaaattttgctaataggtcttaaaatatccaccccatatctt
acagccttgctttaggctaaaaaacttgaaaagtaacaagaactgttgta
gagttctgttgtatacaatctgaagccacttcttgggaaactagcaacca
agctctaatttctgtccagagggaggtagatgttaacaggatgttgtgat
atggatgtattaccacatagttgtacagtctgaagttatagtgtacagtt
tggtgaagagcacttagtttttgtctagcacatgagtgttcccaagcttt
ctccctttggaacttgtctcgggactctggaagtgatctatacttatct
gaattcagaattaacacttgacaggaagaattgtgaaaaatttaagatcg
aggaagcctttttattttaaggataaagaagaaaaagaaaagataacatt
ctacacagctaaaaatactgtgtgtttggtgctagaattctctgcacttc
tatgagaaccagcataggaggcatagaaaggccaatgttttttgattttt
aatgaattgtttatatttaaatgaaaactgttttagggcaatttgtttgt
ttttagttcctaattacatatgtctgatttttttctccctgttattaaag
gaaggtgtttctttttatttaaagggataaagattcacgtaatcaaaaag
tacgtcaagaaattatatattaattaatgcagccaatctatcagggtcag
ttggaatgaaagcaagaaactaaacaaggagagaaatctgtccacttcta
cccctgactctgtcagtatgaataatctcagggcagtcattaaaccccca
ctcagcaatccttatcttaaaatagagattaaaaacaaatcaaacttgtg
gctgcctctctcggatttgaagcttaacttgtaattagggctacaagtta
tgaaaggtttctgggaaaggccattgtgaaaaggtagagaacatggattt
aataatgacattaccctctctcaaatgtgaagtaatttaattctcactgt
agctgttcctcatgggtgggaaatatctatttcggcacattattgtactg
agttctgaagaggctctttttgccaaagctctgataggttggttatcaag
tacactatgctttctgtgctgatgttactggcaggatttttcctgtactt
tctttcctgtgacatattcagtacaattagcatctgagcctttcacgtct
ccatcattataaaggataacacttgtttcattatctttgaaaattattct
tttcatgacttattttccccatcaatatattattacatgctgcaagcata
agaccctcatatttaaagctaaaatgctagacatgacatacttcagataa
aatgatactaaacatttagaaaagtgtgaacagtggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67276567_67277687
seq2: B6Ng01-138I14.b_45_1143

seq1  GAATTCTGCGTTCCGTGGAGAGGGCCTGAATCAGCTGCTGCTCTCCCGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGTTCCGTGGAGAGGGCCTGAATCAGCTGCTGCTCTCCCGGC  50

seq1  TGCTGCCTCTGCTGCTGCTGGGTTATCTTGCTGTTACATTTCTTGCTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTCTGCTGCTGCTGGGTTATCTTGCTGTTACATTTCTTGCTGCG  100

seq1  TTTGCTGTTGCCGGACTGGCAGATTCTTGATTTGCTGGTTTGCTGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTGCCGGACTGGCAGATTCTTGATTTGCTGGTTTGCTGGACTG  150

seq1  CTGGATATTCTGACCACAAAGATCAGACTCACCCTAAGGACCCTGACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATTCTGACCACAAAGATCAGACTCACCCTAAGGACCCTGACTGC  200

seq1  CCTAATCAGCAGGAAGTAGCCTAGAGAGAGGTCTATTAATCCTTTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCAGCAGGAAGTAGCCTAGAGAGAGGTCTATTAATCCTTTCCCCT  250

seq1  CTAACCTTATTTCTCTCCTACCTAGGGTTAGGCGGTTGGAAGAAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTATTTCTCTCCTACCTAGGGTTAGGCGGTTGGAAGAAATTAGG  300

seq1  GTGAAATAATAGTTGAATGGTAAAGGTATAAGAACCCAACAAAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAATAGTTGAATGGTAAAGGTATAAGAACCCAACAAAATAATAA  350

seq1  ACAAATATGCCAACAGTCATCTATAACTAATTGTGCAGTCTCATATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGCCAACAGTCATCTATAACTAATTGTGCAGTCTCATATGTTT  400

seq1  TGCCATTGTTGGTAAACTGTGACACCAGTCTTGTCATAATAGACTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGTTGGTAAACTGTGACACCAGTCTTGTCATAATAGACTGCCTA  450

seq1  CATTCTCCAGCCATTCCACTCCTAACTTCTATGAGACCAATTTTTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCAGCCATTCCACTCCTAACTTCTATGAGACCAATTTTTTTATA  500

seq1  TTTTCTAGTTAGTTCAAGATTATGTAATCTTAAGAGCTATTCTATTTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTTAGTTCAAGATTATGTAATCTTAAGAGCTATTCTATTTACG  550

seq1  TCCCTCATCGAGCAGATGAGCAATGCTATCTGAATTTATTTATTTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCGAGCAGATGAGCAATGCTATCTGAATTTATTTATTTTTTAT  600

seq1  ATTTATTGGCCAAAATTGGTACATGTGGCATTTCTTTCAGATAGGTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGGCCAAAATTGGTACATGTGGCATTTCTTTCAGATAGGTATAA  650

seq1  CAGTTTGTCTTATTCTACTGTCACTAAATACATCCTACAACTTCAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTCTTATTCTACTGTCACTAAATACATCCTACAACTTCAATATA  700

seq1  CATGTTTTTCTTCTCTTTTCTTTCAGTTACACTCAAATTCTTTAATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTCTTCTCTTTTCTTTCAGTTACACTCAAATTCTTTAATATTC  750

seq1  GAGGCCTTAAAATTTTGCTAATAGGTCTTAAAATATCCACCCCATATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTAAAATTTTGCTAATAGGTCTTAAAATATCCACCCCATATCTT  800

seq1  ACAGCCTTGCTTTAGGCTAAAAAACTTGAAAAGTAACAAGAACTGTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTGCTTTAGGCTAAAAAACTTGAAAAGTAACAAGAACTGTTGTA  850

seq1  GAGTTCTGTTGTATACAATCTGAAGCCACTTCTTGGGAAACTAGCAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTTGTATACAATCTGAAGCCACTTCTTGGGAAACTAGCAACCA  900

seq1  AGCTCTAAATTTCTGTCCAGAGGGAGGTAGATGTTAACAAGAATGTTGTG  950
      |||||| ||||||||||||||||||||||||||||||| || ||||||||
seq2  AGCTCT-AATTTCTGTCCAGAGGGAGGTAGATGTTAAC-AGGATGTTGTG  948

seq1  ATATGGATGTATTAACCACATAGTTTGTAACAGTCCTGAAGTTATAGTGT  1000
      ||||||||||||| ||||||||| |||| ||||| |||||||||||||||
seq2  ATATGGATGTATT-ACCACATAG-TTGT-ACAGT-CTGAAGTTATAGTGT  994

seq1  ACAAGTTTGGTGAAAGAGCACTTAGTTTTTGTCTAGCAACATGGAGTGGT  1050
      || ||||||||| |||||||||||||||||||||||| |||| ||||| |
seq2  AC-AGTTTGGTG-AAGAGCACTTAGTTTTTGTCTAGC-ACAT-GAGTGTT  1040

seq1  CCCAAAGCCTTTTCTCCCTTTTGGGAAAACTTTGTCCTTCTGTGACTCTG  1100
      ||| ||||  |||||||||||  ||||    |||||  || | |||||||
seq2  CCC-AAGC--TTTCTCCCTTT--GGAA---CTTGTC--TC-GGGACTCTG  1079

seq1  AGAGTGATCTATACCTTATCT  1121
        ||||||||||| |||||||
seq2  GAAGTGATCTATA-CTTATCT  1099

seq1: chr2_67400042_67401154
seq2: B6Ng01-138I14.g_69_1157 (reverse)

seq1  TTTCCACTGTTCCAACACCTATTTCTAAAAATGGTTTAGTAATCATTTTA  50
      ||||||||||||  ||||   ||||||||    ||||||| |||||||| 
seq2  TTTCCACTGTTC--ACAC--TTTTCTAAA---TGTTTAGT-ATCATTTT-  41

seq1  TAATCTGAAGTAATGTCAATTGTTCTAAGCATTTTTAGCTTTAAATATGA  100
        ||||||||| ||||||  || ||| |||| ||||||||||||||||||
seq2  --ATCTGAAGT-ATGTCA--TG-TCT-AGCA-TTTTAGCTTTAAATATGA  83

seq1  GGGTCTTTATGCTTGGCAGCATGTAATTAATTATATTGATTGGGGAAAAT  150
      ||||| |||||||| ||||||||||||  | |||||||| ||||||||||
seq2  GGGTC-TTATGCTT-GCAGCATGTAAT--AATATATTGA-TGGGGAAAAT  128

seq1  AAGTTCATGAAAAGAATAATTTTTCAAAGATAATGAAACAAGTGTTATCC  200
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAG-TCATGAAAAGAATAA-TTTTCAAAGATAATGAAACAAGTGTTATCC  176

seq1  TTTATAATGATGGAGACGTGAAAGGCTCAGATGCTAATTGTACTGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGATGGAGACGTGAAAGGCTCAGATGCTAATTGTACTGAATAT  226

seq1  GTCACAGGGAAGAAAGTACAGGAAAAATCCTGCCAGTAACATCAGCACAG  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGAAAGAAAGTACAGGAAAAATCCTGCCAGTAACATCAGCACAG  276

seq1  AAAGCATAGTGTACTTGATAACCAACCTATCAGAGCTTTGGCAAAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAGTGTACTTGATAACCAACCTATCAGAGCTTTGGCAAAAAGAG  326

seq1  CCTCTTCAGAACTCAGTACAATAATGTGCCGAAATAGATATTTCCCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAGAACTCAGTACAATAATGTGCCGAAATAGATATTTCCCACCC  376

seq1  ATGAGGAACAGCTACAGTGAGAATTAAATTACTTCACATTTGAGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACAGCTACAGTGAGAATTAAATTACTTCACATTTGAGAGAGGG  426

seq1  TAATGTCATTATTAAATCCATGTTCTCTACCTTTTCACAATGGCCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCATTATTAAATCCATGTTCTCTACCTTTTCACAATGGCCTTTCC  476

seq1  CAGAAACCTTTCATAACTTGTAGCCCTAATTACAAGTTAAGCTTCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTTTCATAACTTGTAGCCCTAATTACAAGTTAAGCTTCAAATC  526

seq1  CGAGAGAGGCAGCCACAAGTTTGATTTGTTTTTAATCTCTATTTTAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGGCAGCCACAAGTTTGATTTGTTTTTAATCTCTATTTTAAGAT  576

seq1  AAGGATTGCTGAGTGGGGGTTTAATGACTGCCCTGAGATTATTCATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGCTGAGTGGGGGTTTAATGACTGCCCTGAGATTATTCATACTG  626

seq1  ACAGAGTCAGGGGTAGAAGTGGACAGATTTCTCTCCTTGTTTAGTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCAGGGGTAGAAGTGGACAGATTTCTCTCCTTGTTTAGTTTCTT  676

seq1  GCTTTCATTCCAACTGACCCTGATAGATTGGCTGCATTAATTAATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATTCCAACTGACCCTGATAGATTGGCTGCATTAATTAATATATA  726

seq1  ATTTCTTGACGTACTTTTTGATTACGTGAATCTTTATCCCTTTAAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGACGTACTTTTTGATTACGTGAATCTTTATCCCTTTAAATAAA  776

seq1  AAGAAACACCTTCCTTTAATAACAGGGAGAAAAAAATCAGACATATGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACCTTCCTTTAATAACAGGGAGAAAAAAATCAGACATATGTAA  826

seq1  TTAGGAACTAAAAACAAACAAATTGCCCTAAAACAGTTTTCATTTAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACTAAAAACAAACAAATTGCCCTAAAACAGTTTTCATTTAAATA  876

seq1  TAAACAATTCATTAAAAATCAAAAAACATTGGCCTTTCTATGCCTCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTCATTAAAAATCAAAAAACATTGGCCTTTCTATGCCTCCTAT  926

seq1  GCTGGTTCTCATAGAAGTGCAGAGAATTCTAGCACCAAACACACAGTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCTCATAGAAGTGCAGAGAATTCTAGCACCAAACACACAGTATT  976

seq1  TTTAGCTGTGTAGAATGTTATCTTTTCTTTTTCTTCTTTATCCTTAAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGTGTAGAATGTTATCTTTTCTTTTTCTTCTTTATCCTTAAAAT  1026

seq1  AAAAAGGCTTCCTCGATCTTAAATTTTTCACAATTCTTCCTGTCAAGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCTTCCTCGATCTTAAATTTTTCACAATTCTTCCTGTCAAGTGT  1076

seq1  TAATTCTGAATTC  1113
      |||||||||||||
seq2  TAATTCTGAATTC  1089