BAC Information

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BAC

Clone NameB6Ng01-138K19
Chromosome2 (Build37)
Map Location 164,646,652 - 164,823,793
singlet/doubletdoublet
Overlap geneZswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5
Upstream geneWisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8
Downstream geneNcoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K19.bB6Ng01-138K19.g
ACCDH937869DH937870
length1,064917
definitionDH937869|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K19, 5' end.DH937870|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,646,652 - 164,647,729)(164,822,868 - 164,823,793)
sequence
gaattccacccacctggtagacgaggccggctcctcagtggctgttcagc
tgctagagaactcacaccaggtgagcaaagatggctgtagctgcagctgc
tcctttcaacagtgctaccatctgccatgccgccacattttggctctgtt
gcataccagccagcagccagtaggggaagccatggtgtgctgccggtggc
agaagaaataccagcacctccttgaccccaatggggagctgcaagaccgt
ggaatcatcccaaacacagatcagcctgaaaagcaaggtcagaaccacat
gattcgggacctaagcagggagctggcaaacctgctgatgcagaccgagg
ggccagagctggaggagcgctgctccaccctgcgcaagattgtggacatc
tgggcagacccctatcagctgcctgagtccagtcagcagccagttgactt
cagagacgtgggctgcctccctttcctctggggaaagctagaggaagcag
acagcccccctcttgctgaagccatggttcatgattgaagtgtttgtact
agtgaacccatctcagaaccaccttgggacagttcaaagtggtgggtcag
actgtaggtcagtatttttatcagtgtcttcctaggtaagggctaagaag
atcttaaaactcgggggagagggactccactgtgacaatcctttgaccct
gcctcatttcagccctacctttggcgttctgtagacaccttgttcattgt
tcaaagccaaagttattccatatgaaagggcatgctcctttcttcccagc
ctacacagacgaacccttgcccaggttaggataaacacaatgggcccgga
aaggagctttgtgtccagagacagagggggaggagggtagcccttgattg
tcaactgtgctgctctttagaaaatacctgtacgtatttttattcacact
aataaagtcggtttttgtttgtttcacgtttgtgtttttgagacgggcct
cagtagccagactacggcctcaacgttgtcattaaaggaaccatgaatgt
tgtctatgggtact
gaattcagtctttggcgaggagccacgggacagggggagcaggcggcaag
ccaagagaggagagacgcctgctcctccacgaaggcaccgggcaggactt
cctcggtgggcacgggcctcagtttctccccctggaggggcgacccctcc
cctcctggccgcctggaagctcgcatccaccgaagccggccaccgtctca
cctttgtccgccaagaactggagggaggagagggtagcccaggctgtgga
caggaaagggaaaggagagcgccggccttaaagcacttggctctcagctc
gggagcgcagggaaacctggctccccggcttccgccttcctgggtgcccg
cagcggggagagcgcggccgtggcgaggagtccgttgcgtttctagttac
agaaatatggggacattaaaaatacacgcgatgtctcctgtacactatgt
atagcgcgaccgagcggcacccgggctcggcgaccagggtcccgggggga
gctcggtggggcgtggggagggacgggctcggggctgcccggcgcgggac
cacggttccgctcctctccacgcctcctcgccacctttattgcaacgtct
gctccggcggggcgaggccaggctcagaaaaggggcccacgggccgccct
gcgggtcagccccgacgggcaaggcctcagggctgcaggcagcgggaagg
aaaggggccagggcatgggcaactgggtcttatgtaaacggtgacagcgg
cggggaggcgcggcgagggctctgggggccgcgggccgggcgcgctcggg
ccggagtggcagtcctggccttcaggagtagatggtgatgacctctcgcc
gccacgcgaaccagcatcacccgtcagttgctcatgagaacctcaagaat
tcatgtctaaagctggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164646652_164647729
seq2: B6Ng01-138K19.b_43_1106

seq1  GAATTCCACCCACCTGGTAGACGAGGCCGGCTCCTCAGTGGCTGTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCACCTGGTAGACGAGGCCGGCTCCTCAGTGGCTGTTCAGC  50

seq1  TGCTAGAGAACTCACACCAGGTGAGCAAAGATGGCTGTAGCTGCAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGAACTCACACCAGGTGAGCAAAGATGGCTGTAGCTGCAGCTGC  100

seq1  TCCTTTCAACAGTGCTACCATCTGCCATGCCGCCACATTTTGGCTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAACAGTGCTACCATCTGCCATGCCGCCACATTTTGGCTCTGTT  150

seq1  GCATACCAGCCAGCAGCCAGTAGGGGAAGCCATGGTGTGCTGCCGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCAGCCAGCAGCCAGTAGGGGAAGCCATGGTGTGCTGCCGGTGGC  200

seq1  AGAAGAAATACCAGCACCTCCTTGACCCCAATGGGGAGCTGCAAGACCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATACCAGCACCTCCTTGACCCCAATGGGGAGCTGCAAGACCGT  250

seq1  GGAATCATCCCAAACACAGATCAGCCTGAAAAGCAAGGTCAGAACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATCCCAAACACAGATCAGCCTGAAAAGCAAGGTCAGAACCACAT  300

seq1  GATTCGGGACCTAAGCAGGGAGCTGGCAAACCTGCTGATGCAGACCGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGGACCTAAGCAGGGAGCTGGCAAACCTGCTGATGCAGACCGAGG  350

seq1  GGCCAGAGCTGGAGGAGCGCTGCTCCACCCTGCGCAAGATTGTGGACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGCTGGAGGAGCGCTGCTCCACCCTGCGCAAGATTGTGGACATC  400

seq1  TGGGCAGACCCCTATCAGCTGCCTGAGTCCAGTCAGCAGCCAGTTGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGACCCCTATCAGCTGCCTGAGTCCAGTCAGCAGCCAGTTGACTT  450

seq1  CAGAGACGTGGGCTGCCTCCCTTTCCTCTGGGGAAAGCTAGAGGAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGTGGGCTGCCTCCCTTTCCTCTGGGGAAAGCTAGAGGAAGCAG  500

seq1  ACAGCCCCCCTCTTGCTGAAGCCATGGTTCATGATTGAAGTGTTTGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCCCTCTTGCTGAAGCCATGGTTCATGATTGAAGTGTTTGTACT  550

seq1  AGTGAACCCATCTCAGAACCACCTTGGGACAGTTCAAAGTGGTGGGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACCCATCTCAGAACCACCTTGGGACAGTTCAAAGTGGTGGGTCAG  600

seq1  ACTGTAGGTCAGTATTTTTATCAGTGTCTTCCTAGGTAAGGGCTAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGTCAGTATTTTTATCAGTGTCTTCCTAGGTAAGGGCTAAGAAG  650

seq1  ATCTTAAAACTCGGGGGAGAGGGACTCCACTGTGACAATCCTTTGACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAACTCGGGGGAGAGGGACTCCACTGTGACAATCCTTTGACCCT  700

seq1  GCCTCATTTCAGCCCTACCTTTGGCGTTCTGTAGACACCTTGTTCATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTCAGCCCTACCTTTGGCGTTCTGTAGACACCTTGTTCATTGT  750

seq1  TCAAAGCCAAAGTTATTCCATATGAAAGGGCATGCTCCTTTCTTCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCAAAGTTATTCCATATGAAAGGGCATGCTCCTTTCTTCCCAGC  800

seq1  CTACACAGACGAACCCTTGCCCAGGTTAGGATAAACACAATGGGCCCGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGACGAACCCTTGCCCAGGTTAGGATAAACACAATGGGCCCGGA  850

seq1  AAGGAGCTTTGTGTCCAGAGACAGAGGGGGAGGAGGGTAGCCCTTGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTTTGTGTCCAGAGACAGAGGGGGAGGAGGGTAGCCCTTGATTG  900

seq1  TCAACTGTTGCTGCTCTTTAGAAAATACCTGTTACGTATTTTTATTCACA  950
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAACTG-TGCTGCTCTTTAGAAAATACCTG-TACGTATTTTTATTCACA  948

seq1  CTAATAAAGTCGGTTTTTGTTTTGTTTCACGTTTGTGTTTTTTGAGACGG  1000
      ||||||||||||||||||| ||||||||||||||||| |||||||||| |
seq2  CTAATAAAGTCGGTTTTTG-TTTGTTTCACGTTTGTG-TTTTTGAGAC-G  995

seq1  GGCCTCATGTAGCCCAGACTAGCGGCCTCAAAACGTTGTCATTTTAAAGG  1050
      ||||||| |||| |||||||| |||||||  ||||||||||  |||||||
seq2  GGCCTCA-GTAG-CCAGACTA-CGGCCTC--AACGTTGTCA--TTAAAGG  1038

seq1  AACCATGAATGTTGTCTAATGGGGTACT  1078
      ||||||||||||||||||   |||||||
seq2  AACCATGAATGTTGTCTA--TGGGTACT  1064

seq1: chr2_164822868_164823793
seq2: B6Ng01-138K19.g_70_986 (reverse)

seq1  ACCAGCTCTTAGACATGGAATTCTTGGAGGTCCTCACTGAGCAACTGGAC  50
      ||||||| |||||||| |||||||| ||||| |||| ||||||||||   
seq2  ACCAGCT-TTAGACAT-GAATTCTT-GAGGTTCTCA-TGAGCAACTG--A  44

seq1  CGGGTGATGCTGGTCCGCGGTGGCGGCCGAGAGGTCATCACCATCTACTC  100
      |||||||||||||| ||| ||||||| |||||||||||||||||||||||
seq2  CGGGTGATGCTGGTTCGC-GTGGCGG-CGAGAGGTCATCACCATCTACTC  92

seq1  CTGAAGGCCAGGACCTGCCACTCCGGCCCGAGCGCGCCCGGCCCGCGGCC  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCCAGGA-CTGCCACTCCGGCCCGAGCGCGCCCGGCCCGCGGCC  141

seq1  CCCAGAGCCCTCGCCGCGCCTCCCCGCCGCTGTCACCGTTTACATAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCCCTCGCCGCGCCTCCCCGCCGCTGTCACCGTTTACATAAGAC  191

seq1  CCAGTTGCCCATGCCCTGGCCCCTTTCCTTCCCGCTGCCTGCAGCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCCCATGCCCTGGCCCCTTTCCTTCCCGCTGCCTGCAGCCCTGA  241

seq1  GGCCTTGCCCGTCGGGGCTGACCCGCAGGGCGGCCCGTGGGCCCCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGCCCGTCGGGGCTGACCCGCAGGGCGGCCCGTGGGCCCCTTTTC  291

seq1  TGAGCCTGGCCTCGCCCCGCCGGAGCAGACGTTGCAATAAAGGTGGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGGCCTCGCCCCGCCGGAGCAGACGTTGCAATAAAGGTGGCGAG  341

seq1  GAGGCGTGGAGAGGAGCGGAACCGTGGTCCCGCGCCGGGCAGCCCCGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTGGAGAGGAGCGGAACCGTGGTCCCGCGCCGGGCAGCCCCGAGC  391

seq1  CCGTCCCTCCCCACGCCCCACCGAGCTCCCCCCGGGACCCTGGTCGCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCTCCCCACGCCCCACCGAGCTCCCCCCGGGACCCTGGTCGCCGA  441

seq1  GCCCGGGTGCCGCTCGGTCGCGCTATACATAGTGTACAGGAGACATCGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGTGCCGCTCGGTCGCGCTATACATAGTGTACAGGAGACATCGCG  491

seq1  TGTATTTTTAATGTCCCCATATTTCTGTAACTAGAAACGCAACGGACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTAATGTCCCCATATTTCTGTAACTAGAAACGCAACGGACTCC  541

seq1  TCGCCACGGCCGCGCTCTCCCCGCTGCGGGCACCCAGGAAGGCGGAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACGGCCGCGCTCTCCCCGCTGCGGGCACCCAGGAAGGCGGAAGCC  591

seq1  GGGGAGCCAGGTTTCCCTGCGCTCCCGAGCTGAGAGCCAAGTGCTTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCCAGGTTTCCCTGCGCTCCCGAGCTGAGAGCCAAGTGCTTTAAG  641

seq1  GCCGGCGCTCTCCTTTCCCTTTCCTGTCCACAGCCTGGGCTACCCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCGCTCTCCTTTCCCTTTCCTGTCCACAGCCTGGGCTACCCTCTCC  691

seq1  TCCCTCCAGTTCTTGGCGGACAAAGGTGAGACGGTGGCCGGCTTCGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAGTTCTTGGCGGACAAAGGTGAGACGGTGGCCGGCTTCGGTGG  741

seq1  ATGCGAGCTTCCAGGCGGCCAGGAGGGGAGGGGTCGCCCCTCCAGGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAGCTTCCAGGCGGCCAGGAGGGGAGGGGTCGCCCCTCCAGGGGGA  791

seq1  GAAACTGAGGCCCGTGCCCACCGAGGAAGTCCTGCCCGGTGCCTTCGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGGCCCGTGCCCACCGAGGAAGTCCTGCCCGGTGCCTTCGTGG  841

seq1  AGGAGCAGGCGTCTCTCCTCTCTTGGCTTGCCGCCTGCTCCCCCTGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGGCGTCTCTCCTCTCTTGGCTTGCCGCCTGCTCCCCCTGTCCC  891

seq1  GTGGCTCCTCGCCAAAGACTGAATTC  926
      ||||||||||||||||||||||||||
seq2  GTGGCTCCTCGCCAAAGACTGAATTC  917