BAC Information

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BAC

Clone NameB6Ng01-138L01
Chromosome2 (Build37)
Map Location 39,780,997 - 39,782,089
singlet/doubletsinglet
Overlap genenone
Upstream geneNr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138L01.bB6Ng01-138L01.g
ACCDH937879DH937880
length1,1211,093
definitionDH937879|Mus musculus domesticus DNA, BAC clone: B6Ng01-138L01, 5' end.DH937880|Mus musculus domesticus DNA, BAC clone: B6Ng01-138L01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctggctcatcaggagtggcactattaggaagtgtggccttgtcg
tagtaggtgtggcctttttgaaggatgtgtggtactgcggaggtaggctt
tgagatctctcaagtggtagtgtccttctgattcttgcagatcaagatta
cagaactctctagaggaaagaggagaaggtactatggggtcagaatctta
aaatcatggctgtgaaggctggccaactagagttaagagtagcccagatg
gaagaccatgagggcagccctgagaagatccacccttgaggatgttgaga
atacctgctgttccagatctctgcttaatcaacagcattgaagatgtttc
ctctaaagaagtactcctggaactttttcagaactgctagaacaccctgt
ctagactttcagactattccaatcaagactttatttaagcctgcactttc
tcaatatacagagactggacaagaaatgattacagctttctttctttctt
catttttttcttttattttctctatttccttttttaaaattattattagt
tattttctttatttacatttcaaatattgtcccctttcctagtttcccct
ctgaaaaccccctccctccctcctctctccccctgctcaccaactcaacc
actcttgaccctgacatttccctataatggggcatattaccgttacagga
cctaggtcctctactcccattgatgactagtccattctctgctacatatg
cagctagagccatgagtcccataatgtgctttctttggttggtggattag
tcccagggagctctggaggttctggttagttcatattgttgttcttccta
tttttctaattttcttgggtcaccaaaaaaaggaattttccacctcagtt
cagcagcagcaattataagaagacttgtctcagtccttttagttgggatg
gatggtttgaatatatataaatattcatatgttgtcaaataagggatgat
tataacacatgtgtaggcagaagagtaaacaggaactagactccaggatt
aattctgttctttctcgactctatgcctcttagataaggagaggggttga
aagagaaaaggggcgatatga
gaattcctcagagttcagttgtatctgtgatcctgtgatcctgaggtcct
gggtgtaagagcttctgggtgtcaagctgcctctgggatgcagaaatcct
gttgtgaccaagctcctgagatgctgtgaagctatgatcctgagaatagt
agagcacctatgatccaggcatgttagagcacctgagtgtccagcttcct
ctgggtgttctgggattgggtgcagagttcatgcccaagatctattcagg
gcaccggctcagaccagaaggccaacatcctgtgtcttaacaaacttttg
ccaagaaggaaggtttaattatggaaagaaattgctgcagaaagtatcta
caactgaagtttgtaagaactggcattttggcagtattaggccttccttc
agtgaagataggctttatttgtaacttttattttcttctgtctttaatga
gatatttttgattttccttgcatagctcttggttatgatttaatgggttt
atgcctaaaggtttttctgtcattggctttttctcattttagacaaaaag
ctaaagtaaatttaagtttttaaaaatttggacactaattatcatttctt
gaatgcagaaaagaaatctgacttttgaacattaaccaagtattataaaa
acttttaataattatgtattatttccagaagtgatttctgttgctatttt
tagatcttctacacagatgatgatattctctgatatatatatatatttat
acacacacacacacacacacacacacacacacatatatatatatatatat
tactaggatttcaagaaattgtctttaacaggagtgagaaaggtcttttc
tcaatctatttgtttttgttttttacctttaaagatattacctgtagaat
gttcataagtggtctttttcaccttgagaaaaacagccatcaatccacta
catatgagagttcacccacaaatttcttttcacacaaatttctttaggac
atgccaattctttttctatactaatgatacaatcctgcaatgttccattt
tagcttgtcaatatgacagttaacaacacccaagtttttaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39780997_39782089
seq2: B6Ng01-138L01.g_70_1162

seq1  GAATTCCTCAGAGTTCAGTTGTATCTGTGATCCTGTGATCCTGAGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGTTCAGTTGTATCTGTGATCCTGTGATCCTGAGGTCCT  50

seq1  GGGTGTAAGAGCTTCTGGGTGTCAAGCTGCCTCTGGGATGCAGAAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAAGAGCTTCTGGGTGTCAAGCTGCCTCTGGGATGCAGAAATCCT  100

seq1  GTTGTGACCAAGCTCCTGAGATGCTGTGAAGCTATGATCCTGAGAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACCAAGCTCCTGAGATGCTGTGAAGCTATGATCCTGAGAATAGT  150

seq1  AGAGCACCTATGATCCAGGCATGTTAGAGCACCTGAGTGTCCAGCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTATGATCCAGGCATGTTAGAGCACCTGAGTGTCCAGCTTCCT  200

seq1  CTGGGTGTTCTGGGATTGGGTGCAGAGTTCATGCCCAAGATCTATTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTTCTGGGATTGGGTGCAGAGTTCATGCCCAAGATCTATTCAGG  250

seq1  GCACCGGCTCAGACCAGAAGGCCAACATCCTGTGTCTTAACAAACTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGGCTCAGACCAGAAGGCCAACATCCTGTGTCTTAACAAACTTTTG  300

seq1  CCAAGAAGGAAGGTTTAATTATGGAAAGAAATTGCTGCAGAAAGTATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGGAAGGTTTAATTATGGAAAGAAATTGCTGCAGAAAGTATCTA  350

seq1  CAACTGAAGTTTGTAAGAACTGGCATTTTGGCAGTATTAGGCCTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAGTTTGTAAGAACTGGCATTTTGGCAGTATTAGGCCTTCCTTC  400

seq1  AGTGAAGATAGGCTTTATTTGTAACTTTTATTTTCTTCTGTCTTTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATAGGCTTTATTTGTAACTTTTATTTTCTTCTGTCTTTAATGA  450

seq1  GATATTTTTGATTTTCCTTGCATAGCTCTTGGTTATGATTTAATGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTGATTTTCCTTGCATAGCTCTTGGTTATGATTTAATGGGTTT  500

seq1  ATGCCTAAAGGTTTTTCTGTCATTGGCTTTTTCTCATTTTAGACAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAAAGGTTTTTCTGTCATTGGCTTTTTCTCATTTTAGACAAAAAG  550

seq1  CTAAAGTAAATTTAAGTTTTTAAAAATTTGGACACTAATTATCATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAAATTTAAGTTTTTAAAAATTTGGACACTAATTATCATTTCTT  600

seq1  GAATGCAGAAAAGAAATCTGACTTTTGAACATTAACCAAGTATTATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGAAAAGAAATCTGACTTTTGAACATTAACCAAGTATTATAAAA  650

seq1  ACTTTTAATAATTATGTATTATTTCCAGAAGTGATTTCTGTTGCTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATAATTATGTATTATTTCCAGAAGTGATTTCTGTTGCTATTTT  700

seq1  TAGATCTTCTACACAGATGATGATATTCTCTGATATATATATATATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTCTACACAGATGATGATATTCTCTGATATATATATATATTTAT  750

seq1  ACACACACACACACACACACACACACACACACATATATATATATATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACATATATATATATATATAT  800

seq1  TACTAGGATTTCAAG-AATTGTCTTTAACAGGAGTGAGAAAGGTCTTTTC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACTAGGATTTCAAGAAATTGTCTTTAACAGGAGTGAGAAAGGTCTTTTC  850

seq1  TCAATCTATTTGTTTTTGTTTTTTACCTTTAAAGATATTACCTGTAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTATTTGTTTTTGTTTTTTACCTTTAAAGATATTACCTGTAGAAT  900

seq1  GTTCATAAGTGGTCTTTTTCACCTTGAG-AAAACAGCCATCAATCCACTA  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTCATAAGTGGTCTTTTTCACCTTGAGAAAAACAGCCATCAATCCACTA  950

seq1  CATAATGAGAGTTCA-CCACAAATTTCTTTTTCACCACAAATTTCTTTAG  997
      ||| ||||||||||| ||||||||||| |||||| |||||||||||||||
seq2  CAT-ATGAGAGTTCACCCACAAATTTC-TTTTCA-CACAAATTTCTTTAG  997

seq1  GACATGGCCAATTC-TTTTCTATACTAATGATACAATCCTGCAATGTTCC  1046
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  GACAT-GCCAATTCTTTTTCTATACTAATGATACAATCCTGCAATGTTCC  1046

seq1  ATTTTAGCTTGTCAATATGACAGTTTAACAACACCC-AGTTTTTAATT  1093
      ||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  ATTTTAGCTTGTCAATATGACAG-TTAACAACACCCAAGTTTTTAATT  1093