BAC Information

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BAC

Clone NameB6Ng01-138N05
Chromosome2 (Build37)
Map Location 50,310,306 - 50,439,092
singlet/doubletdoublet
Overlap geneLOC666781
Upstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N05.bB6Ng01-138N05.g
ACCDH937972DH937973
length6741,078
definitionDH937972|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N05, 5' end.DH937973|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,438,422 - 50,439,092)(50,310,306 - 50,311,391)
sequence
gaattctccatgttccttcttcttagagattttgctatagtagttttcac
ccttcaaaccattcattattttcaatttctttatttttactatactgtgt
gcatgcacatatgcgtgtgtgtctgtgtacatgcattcgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgatgtgcacctgtgcttgagggggag
ggtgcaagccaagtgcacttgtggaggtcagaggacaattgacaggaatc
aactgtctccttccaccaggtggggtctaggactggaactcaggttgtca
ggattggtagaagaatctctatttacagaaccatccttgttgctggcctt
catttctttataaatcagtcacattacacagtaatagttctcaaatattt
ccctgtctaagtaaattaataaataacaaatcacccatgtatttagcatg
tccccactttctacccttacccagatgggcatcgtaattcatgagaaagg
tttctcacattaagtttactattctcttccaaagtcatgctttaaaggat
tatatgtgctatacttttaaaatgtaaactattaattaatgagtttagca
ttttaagagcacagttcaacttttcagcacccacatcatgtcttacacca
cctgctactcagttccagtggacg
gaattccaggaaatccaggactacatagagaaaacctgtctcagaccctc
ccccaaaaaatctcccacaaaaacaaaaacaaaactcagcaccaattagg
tgtctaaagaacagaaggtgactacctcaattctagaagccagaggcctg
aagtcttgctatcaccagggatgtgtttctctgaagcctgaagggtaagg
gttagggtccccctaactttttcaagcttcttggccagtgatctctgtat
tccttggattattgtatccttttaaactcctgttttcatgcagtgctctt
cttgtgtgccatcatcctgtctttttctctgtatacatttgtctctgttc
aaatttttttccttttgttaagaacagctatttctggattagacccatgc
agatctcgtgttgatctctttaaaaatagtttcaaataaagatacattat
ggagtatgagatactgtctcaatgtatctttatttttttggactgggggt
acaattaaatttacaaaagttaacaagatcatacttctaagtggacgggc
cattcttactatgtggagcccagtattgaaggtctggaatgtgtttcttc
atttaaatgtttgagggatcactaattattaaaaatattattttaaaagc
tgagatactaaatatgaaaggaagaaacttcttgaatggtactcagtaaa
ggtacacagctgtggaccttgatatctgggaggatggggtggggtacata
atcttaagagactttggtgtctttgcatgaggaccatttgtgtatcatct
ctgttgagcatccctgatgagacagctgtgtttcttctgggctcatcctc
agagtccctgttatttcccattttagttcttttcattgatttctatcaga
tcacagatacagggaatcttctgggggttctctgaaaatgtcccatctgc
aataacaagagtatcaacttgtagggtatggtgggtgttcatgaagctat
tttcgtaaaacgttgacatggtgctttgcttaatataattctggtgggca
agataactcagcgagtaaagaccttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50438422_50439092
seq2: B6Ng01-138N05.b_46_718 (reverse)

seq1  GTCCACTGGAACTGAGTAGCAGGTGGTTGTAAGACATGATGTGGGTGCTG  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCCACTGGAACTGAGTAGCAGGTGG-TGTAAGACATGATGTGGGTGCTG  49

seq1  -AAAGTTGAACTGTGCTCTT-AAATGCT-AACTCATTAATTAATAGTTTA  97
       ||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  AAAAGTTGAACTGTGCTCTTAAAATGCTAAACTCATTAATTAATAGTTTA  99

seq1  CATTTTAAAAGTATAGCACATATAATCCTTTAAAGCATGACTTTGGAAGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAAGTATAGCACATATAATCCTTTAAAGCATGACTTTGGAAGA  149

seq1  GAATAGTAAACTTAATGTGAGAAACCTTTCTCATGAATTACGATGCCCAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAAACTTAATGTGAGAAACCTTTCTCATGAATTACGATGCCCAT  199

seq1  CTGGGTAAGGGTAGAAAGTGGGGACATGCTAAATACATGGCTGATTTGTT  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGGGTAAGGGTAGAAAGTGGGGACATGCTAAATACATGGGTGATTTGTT  249

seq1  ATTTATTAATTTACTTAGACAGGGAAATATTTGAGAACTATTACTGTGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAATTTACTTAGACAGGGAAATATTTGAGAACTATTACTGTGTA  299

seq1  ATGTGACTGATTTATAAAGAAATGAAGGCCAGCAACAAGGATGGTTCTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTGATTTATAAAGAAATGAAGGCCAGCAACAAGGATGGTTCTGT  349

seq1  AAATAGAGATTCTTCTACCAATCCTGACAACCTGAGTTCCAGTCCTAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGATTCTTCTACCAATCCTGACAACCTGAGTTCCAGTCCTAGAC  399

seq1  CCCACCTGGTGGAAGGAGACAGTTGATTCCTGTCAATTGTCCTCTGACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGGTGGAAGGAGACAGTTGATTCCTGTCAATTGTCCTCTGACCT  449

seq1  CCACAAGTGCACTTGGCTTGCACCCTCCCCCTCAAGCACAGGTGCACATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGTGCACTTGGCTTGCACCCTCCCCCTCAAGCACAGGTGCACATC  499

seq1  ACACACACACACACACACACACACACACACACACACGAATGCATGTACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGAATGCATGTACAC  549

seq1  AGACACACACGCATATGTGCATGCACACAGTATAGTAAAAATAAAGAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACGCATATGTGCATGCACACAGTATAGTAAAAATAAAGAAAT  599

seq1  TGAAAATAATGAATGGTTTGAAGGGTGAAAACTACTATAGCAAAATCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATGAATGGTTTGAAGGGTGAAAACTACTATAGCAAAATCTCT  649

seq1  AAGAAGAAGGAACATGGAGAATTC  671
      ||||||||||||||||||||||||
seq2  AAGAAGAAGGAACATGGAGAATTC  673

seq1: chr2_50310306_50311391
seq2: B6Ng01-138N05.g_69_1146

seq1  GAATTCCAGGAAATCCAGGACTACATAGAGAAAACCTGTCTCAGACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAATCCAGGACTACATAGAGAAAACCTGTCTCAGACCCTC  50

seq1  CCCCAAAAAATCTCCCACAAAAACAAAAACAAAACTCAGCACCAATTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAAATCTCCCACAAAAACAAAAACAAAACTCAGCACCAATTAGG  100

seq1  TGTCTAAAGAACAGAAGGTGACTACCTCAATTCTAGAAGCCAGAGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAGAACAGAAGGTGACTACCTCAATTCTAGAAGCCAGAGGCCTG  150

seq1  AAGTCTTGCTATCACCAGGGATGTGTTTCTCTGAAGCCTGAAGGGTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGCTATCACCAGGGATGTGTTTCTCTGAAGCCTGAAGGGTAAGG  200

seq1  GTTAGGGTCCCCCTAACTTTTTCAAGCTTCTTGGCCAGTGATCTCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGTCCCCCTAACTTTTTCAAGCTTCTTGGCCAGTGATCTCTGTAT  250

seq1  TCCTTGGATTATTGTATCCTTTTAAACTCCTGTTTTCATGCAGTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGATTATTGTATCCTTTTAAACTCCTGTTTTCATGCAGTGCTCTT  300

seq1  CTTGTGTGCCATCATCCTGTCTTTTTCTCTGTATACATTTGTCTCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGCCATCATCCTGTCTTTTTCTCTGTATACATTTGTCTCTGTTC  350

seq1  AAATTTTTTTCCTTTTGTTAAGAACAGCTATTTCTGGATTAGACCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTCCTTTTGTTAAGAACAGCTATTTCTGGATTAGACCCATGC  400

seq1  AGATCTCGTGTTGATCTCTTTAAAAATAGTTTCAAATAAAGATACATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCGTGTTGATCTCTTTAAAAATAGTTTCAAATAAAGATACATTAT  450

seq1  GGAGTATGAGATACTGTCTCAATGTATCTTTATTTTTTTGGACTGGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGAGATACTGTCTCAATGTATCTTTATTTTTTTGGACTGGGGGT  500

seq1  ACAATTAAATTTACAAAAGTTAACAAGATCATACTTCTAAGTGGACGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAATTTACAAAAGTTAACAAGATCATACTTCTAAGTGGACGGGC  550

seq1  CATTCTTACTATGTGGAGCCCAGTATTGAAGGTCTGGAATGTGTTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACTATGTGGAGCCCAGTATTGAAGGTCTGGAATGTGTTTCTTC  600

seq1  ATTTAAATGTTTGAGGGATCACTAATTATTAAAAATATTATTTTAAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGTTTGAGGGATCACTAATTATTAAAAATATTATTTTAAAAGC  650

seq1  TGAGATACTAAATATGAAAGGAAGAAACTTCTTGAATGGTACTCAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACTAAATATGAAAGGAAGAAACTTCTTGAATGGTACTCAGTAAA  700

seq1  GGTACACAGCTGTGGACCTTGATATCTGGGAGGATGGGGTGGGGTACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACAGCTGTGGACCTTGATATCTGGGAGGATGGGGTGGGGTACATA  750

seq1  ATCTTAAGAGACTTTGGTGTCTTTGCATGAGGACCATTTGTGTATCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGAGACTTTGGTGTCTTTGCATGAGGACCATTTGTGTATCATCT  800

seq1  CTGTTGAGCATCCCTGATGAGACAGCTGTG-TTCTTCTGGGCTCATCCTC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTTGAGCATCCCTGATGAGACAGCTGTGTTTCTTCTGGGCTCATCCTC  850

seq1  AGAGTCCCTGTTATTTCCCATTTTAGTCCTTTTCATTGAATTCTATCAGA  899
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  AGAGTCCCTGTTATTTCCCATTTTAGTTCTTTTCATTGATTTCTATCAGA  900

seq1  TCACAGATACAGGGAATC-TCTGGGGTTTCTTCTGAAGATTGTCCCATCT  948
      |||||||||||||||||| ||||||| ||| |||||| | ||||||||||
seq2  TCACAGATACAGGGAATCTTCTGGGGGTTC-TCTGAA-AATGTCCCATCT  948

seq1  GCAAATAAACAAGAGTATCAACTTTGTAGGGTCATTGTGGGTGTTTCATG  998
      ||||   ||||||||||||||| ||||||||| || ||||||| ||||||
seq2  GCAA--TAACAAGAGTATCAAC-TTGTAGGGT-ATGGTGGGTG-TTCATG  993

seq1  -AGCTATTTTCTGTAAAACAGTTGACAT-GTGCTTTGCTAAATATAAATT  1046
       |||||||||| ||||||| |||||||| |||||||||| ||||| ||||
seq2  AAGCTATTTTC-GTAAAAC-GTTGACATGGTGCTTTGCTTAATAT-AATT  1040

seq1  CTGGGTGGGCAAGATAGCTCAGCAGGTAAAGGCACTTGCT  1086
      || ||||||||||||| ||||||  |||||| | ||||||
seq2  CT-GGTGGGCAAGATAACTCAGCGAGTAAAGAC-CTTGCT  1078