BAC Information

Click to search

BAC

Clone NameB6Ng01-138N07
Chromosome2 (Build37)
Map Location 155,338,714 - 155,479,949
singlet/doubletdoublet
Overlap geneGgtl3, Acss2, Gss, Myh7b, Trpc4ap
Upstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938
Downstream geneEdem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N07.bB6Ng01-138N07.g
ACCDH937976DH937977
length1,1071,125
definitionDH937976|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N07, 5' end.DH937977|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,338,714 - 155,339,843)(155,478,807 - 155,479,949)
sequence
gaattccatcccctatcagcacttcatcttgccagcttctccctttcatc
tattcattcaataatcatttactgagtgcccaacactgtgctgaattctg
gagaaagaatagtggatgaaaaagccacactccctgcttttcgaggcctc
atagacaacagtaagcccaaataaataaccacaggctttttaataaagca
gtgacctttaacgggggccagaagaagacagatcaaaggtcctgctttgt
tatctggatatgctttatagaggtggaggagaaaaggaaagcccagtaca
gggtaggcacacccactaaactgtagtaagtcacggctgtactgctctta
atctctgaatagaaaacccaaattgaccaggtggctggtgtcaatagatg
accagaaggttccaccaggacatcctttcccacatccactcttgtaccgc
caaggctaccctgcgccccccccccaagaaaattagttttgacaggcagc
tctgacatttgaggtcccaaagtctacacagcccattcttaatcccatca
caggtaaagtgagatccagtcaggctggtgggttctggtggtcaggaagc
agaggagaggatttcagtcgccaggctgggagtgacaatggaagagccag
gctagaaagggccggagcagcatcctccggtatagacagggatatagctc
aagtgcaggcaccaccaggaggaagtcagggagcagaagaatgctctggt
gccaggaagtgacgttgaaggaaagagggcagagggatgctggataaaga
atggtggggagcacagagctggaccacatgggcaggagagatagcaatag
gggaggaataccaacggatctcttggtccccagctccctctctcaagccc
agcttccttcccaaactccatctccttcagtttcagcagaggtggagaac
acagatcttgttgctgatcagaagctcctacgactgactacatccgggca
gatctccatctctgtaggggtaggtatcacagaacagcaagcactgtagt
ctccagacttgagaggtcatgcgtcatccctgtctcaatactagattccc
agacaga
gaattcactctgtagatcaggctggccttgaattcatagagatctgccac
cctctgtctccagagtgctgagatttgtaccaccatgcctggttacttat
tattttttatattttatgtatatgggtgttttcctgcatgtgtgtctgtg
taccacgtgagtgtttggtgccaaggaggccagaagagggcatcctgtcc
cctggaactggagtcacagacagttgaaggccactatgtggtgctgggaa
ttgaaccccagtcccctgaaaaagcaaactctctaaacctctgagccagc
tctagctgcggtgacagcagtctttcttagcgagatgtgatagcgcatgt
ctgttttcctagcacttgggaggtagaagccagagggtcaggaattcaag
gccagtctaggcctcagagaccctgtctcaatggcagaaaaccctaacaa
aaggaaaaagggaccatccccgtcgctcgttgtacagggttgcagtgctg
ttgtgtacattccttctctctctctctctctgcagctgctcttctcagca
tccctggctttgtggaacggctttgcaaactggcaactaggaaagtgtca
gagtcaacgggcacagccagcttccttcaagaactggaggagtggtacac
atggctcgacaatgcgttggtgctagatgccctgatgcgagtggccaatg
aggagtctgaacacaatcaaggtactttctatagggcccctgagtggtga
gtttttctgggccccttggagatgatgtttgatctccttttgtggaaaat
tgagagttacttacagtagaatttccttagtgcagttctacactgggatg
ctattaaaacgttataagttctccttgtttcttaaaagaagaataaagga
gtctggattgataataagagattgaataaggatgcaaagctacttcaaat
aacctatagcacgtgctttcctggggaattctgccacccattacaggaaa
tcccactggatgcttgtagcctttctttagagcaacaattcttaactcat
tttttgagacaatgtttcgtttatcaaaaacggtgaatgagcacagaaaa
agaaaattaacgactaatacttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155338714_155339843
seq2: B6Ng01-138N07.b_45_1152

seq1  GGAATTCCATCCCCTATCAGCACTTCATCTTGCCAGCTTCTCCCTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCATCCCCTATCAGCACTTCATCTTGCCAGCTTCTCCCTTTCAT  50

seq1  CTATTCATTCAATAATCATTTACTGAGTGCCCAACACTGTGCTGAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTCAATAATCATTTACTGAGTGCCCAACACTGTGCTGAATTCT  100

seq1  GGAGAAAGAATAGTGGATGAAAAAGCCACACTCCCTGCTTTTCGAGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAATAGTGGATGAAAAAGCCACACTCCCTGCTTTTCGAGGCCT  150

seq1  CATAGACAACAGTAAGCCCAAATAAATAACCACAGGCTTTTTAATAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACAACAGTAAGCCCAAATAAATAACCACAGGCTTTTTAATAAAGC  200

seq1  AGTGACCTTTAACGGGGGCCAGAAGAAGACAGATCAAAGGTCCTGCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTTTAACGGGGGCCAGAAGAAGACAGATCAAAGGTCCTGCTTTG  250

seq1  TTATCTGGATATGCTTTATAGAGGTGGAGGAGAAAAGGAAAGCCCAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGATATGCTTTATAGAGGTGGAGGAGAAAAGGAAAGCCCAGTAC  300

seq1  AGGGTAGGCACACCCACTAAACTGTAGTAAGTCACGGCTGTACTGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGGCACACCCACTAAACTGTAGTAAGTCACGGCTGTACTGCTCTT  350

seq1  AATCTCTGAATAGAAAACCCAAATTGACCAGGTGGCTGGTGTCAATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGAATAGAAAACCCAAATTGACCAGGTGGCTGGTGTCAATAGAT  400

seq1  GACCAGAAGGTTCCACCAGGACATCCTTTCCCACATCCACTCTTGTACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAAGGTTCCACCAGGACATCCTTTCCCACATCCACTCTTGTACCG  450

seq1  CCAAGGCTACCCTGCGCCCCCCCCCCAAGAAAATTAGTTTTGACAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTACCCTGCGCCCCCCCCCCAAGAAAATTAGTTTTGACAGGCAG  500

seq1  CTCTGACATTTGAGGTCCCAAAGTCTACACAGCCCATTCTTAATCCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACATTTGAGGTCCCAAAGTCTACACAGCCCATTCTTAATCCCATC  550

seq1  ACAGGTAAAGTGAGATCCAGTCAGGCTGGTGGGTTCTGGTGGTCAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAAGTGAGATCCAGTCAGGCTGGTGGGTTCTGGTGGTCAGGAAG  600

seq1  CAGAGGAGAGGATTTCAGTCGCCAGGCTGGGAGTGACAATGGAAGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAGGATTTCAGTCGCCAGGCTGGGAGTGACAATGGAAGAGCCA  650

seq1  GGCTAGAAAGGGCCGGAGCAGCATCCTCCGGTATAGACAGGGATATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAAGGGCCGGAGCAGCATCCTCCGGTATAGACAGGGATATAGCT  700

seq1  CAAGTGCAGGCACCACCAGGAGGAAGTCAGGGAGCAGAAGAATGCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGGCACCACCAGGAGGAAGTCAGGGAGCAGAAGAATGCTCTGG  750

seq1  TGCCAGGAAGTGACGTTGAAGGAAAGAGGGCAGAGGGATGCTGGATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAAGTGACGTTGAAGGAAAGAGGGCAGAGGGATGCTGGATAAAG  800

seq1  AATGGTGGGGAGCACAGAGCTGGACCACATGGGCAGGAGAGATAGCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGGGAGCACAGAGCTGGACCACATGGGCAGGAGAGATAGCAATA  850

seq1  GGGGAGGAATACCAACGGATCTCTTGGTCCCCAGCTCCCTCTCTCAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAATACCAACGGATCTCTTGGTCCCCAGCTCCCTCTCTCAAGCC  900

seq1  CAGCTTCCTTCCCAAACTCCATCTCCTTCAGTTTCAGCAGAGGGTGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGCTTCCTTCCCAAACTCCATCTCCTTCAGTTTCAGCAGA-GGTGGAGA  949

seq1  ACACAGATCTTGTTGCTGACCAGAAGCTCCTACCGACCTGACTAACATCC  1000
      ||||||||||||||||||| |||||||||||| ||| |||||| ||||||
seq2  ACACAGATCTTGTTGCTGATCAGAAGCTCCTA-CGA-CTGACT-ACATCC  996

seq1  GGGCCAGATCCCCATCTCTGGAAGGGGTAGGGTAATCCACAGAACAGCAA  1050
      ||| |||||| |||||||| | ||||||| ||||   |||||||||||||
seq2  GGG-CAGATCTCCATCTCT-GTAGGGGTA-GGTA--TCACAGAACAGCAA  1041

seq1  AGGCACTGTAGTCCCCAAGGACTTTGAGAGGTCATGCCGTCCATCCCCTT  1100
        ||||||||||| |||  ||| ||||||||||||| ||| ||||||  |
seq2  --GCACTGTAGTCTCCA--GAC-TTGAGAGGTCATG-CGT-CATCCC--T  1082

seq1  GTCTCCCAATACCCAGAATCCCCAGACAGA  1130
      ||||  ||||| | || || ||||||||||
seq2  GTCT--CAATA-CTAG-ATTCCCAGACAGA  1108

seq1: chr2_155478807_155479949
seq2: B6Ng01-138N07.g_68_1191 (reverse)

seq1  GTAAGATATTAGTCTGTAATTTTCTTTTCTTGTGATCTATTCATCTGGTT  50
      ||||| ||||||||  ||||||||||||  |||| || ||||| |  |||
seq2  GTAAG-TATTAGTCGTTAATTTTCTTTTTCTGTGCTC-ATTCACC--GTT  46

seq1  TTGGTATAAACGTAAACATTGTCTCAAAAAATGAGTTAAGAAATGTTTGC  100
      || | ||||||| ||||||||||||||||||||||||||||| || ||||
seq2  TTTG-ATAAACG-AAACATTGTCTCAAAAAATGAGTTAAGAATTG-TTGC  93

seq1  TCTACAGAAGGCTTACAAAGCAT-CAGTGGGATTTCCTGTAAATGTGTGG  149
      |||| |||| |  ||| |||||| |||||||||||||||| |||| ||||
seq2  TCTAAAGAAAGGCTAC-AAGCATCCAGTGGGATTTCCTGT-AATGGGTGG  141

seq1  CAGAAATCACCAGGGAAGCCACGTGCTATAGGTTTATTTTGAGTAGCTTT  199
      ||||| || ||||| ||| ||||||||||||| ||||||  |||||| ||
seq2  CAGAATTCCCCAGGAAAG-CACGTGCTATAGG-TTATTTGAAGTAGC-TT  188

seq1  TGCATCCTTATTCAATCTCTTTATTATACAATTCAGACTCCTTTATTTCT  249
      ||||||||||||||||||| ||||||| |||| |||||||||||| ||||
seq2  TGCATCCTTATTCAATCTC-TTATTAT-CAATCCAGACTCCTTTA-TTCT  235

seq1  TCTTTTTATGAAACAAGGAGAACTTATTAACGTTTTAATAGCATCCCAGT  299
      || ||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TC-TTTTAAGAAACAAGGAGAACTTA-TAACGTTTTAATAGCATCCCAGT  283

seq1  GTAGGACTGCACTAAGGAAAATTCTACTGTAAGTAACTCTCAATTTTCCA  349
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAGAACTGCACTAAGG-AAATTCTACTGTAAGTAACTCTCAATTTTCCA  332

seq1  CAAAAAGGAGATCAAACATCATCTCCAAGGGGCCCAGAAAAAACTCACCA  399
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  C-AAAAGGAGATCAAACATCATCTCCAAGGGGCCCAG-AAAAACTCACCA  380

seq1  CTCAGGGGCCCTATAGAAAGTACCTTGATTGTGTTCAGACTCCTCATTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGCCCTATAGAAAGTACCTTGATTGTGTTCAGACTCCTCATTGG  430

seq1  CCACTCGCATCAGGGCATCTAGCACCAACGCATTGTCGAGCCATGTGTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCGCATCAGGGCATCTAGCACCAACGCATTGTCGAGCCATGTGTAC  480

seq1  CACTCCTCCAGTTCTTGAAGGAAGCTGGCTGTGCCCGTTGACTCTGACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCCAGTTCTTGAAGGAAGCTGGCTGTGCCCGTTGACTCTGACAC  530

seq1  TTTCCTAGTTGCCAGTTTGCAAAGCCGTTCCACAAAGCCAGGGATGCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTTGCCAGTTTGCAAAGCCGTTCCACAAAGCCAGGGATGCTGA  580

seq1  GAAGAGCAGCTGCAGAGAGAGAGAGAGAGAAGGAATGTACACAACAGCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCTGCAGAGAGAGAGAGAGAGAAGGAATGTACACAACAGCAC  630

seq1  TGCAACCCTGTACAACGAGCGACGGGGATGGTCCCTTTTTCCTTTTGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCTGTACAACGAGCGACGGGGATGGTCCCTTTTTCCTTTTGTTA  680

seq1  GGGTTTTCTGCCATTGAGACAGGGTCTCTGAGGCCTAGACTGGCCTTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCTGCCATTGAGACAGGGTCTCTGAGGCCTAGACTGGCCTTGAA  730

seq1  TTCCTGACCCTCTGGCTTCTACCTCCCAAGTGCTAGGAAAACAGACATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCCTCTGGCTTCTACCTCCCAAGTGCTAGGAAAACAGACATGC  780

seq1  GCTATCACATCTCGCTAAGAAAGACTGCTGTCACCGCAGCTAGAGCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCACATCTCGCTAAGAAAGACTGCTGTCACCGCAGCTAGAGCTGGC  830

seq1  TCAGAGGTTTAGAGAGTTTGCTTTTTCAGGGGACTGGGGTTCAATTCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTTTAGAGAGTTTGCTTTTTCAGGGGACTGGGGTTCAATTCCCA  880

seq1  GCACCACATAGTGGCCTTCAACTGTCTGTGACTCCAGTTCCAGGGGACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATAGTGGCCTTCAACTGTCTGTGACTCCAGTTCCAGGGGACAG  930

seq1  GATGCCCTCTTCTGGCCTCCTTGGCACCAAACACTCACGTGGTACACAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTCTGGCCTCCTTGGCACCAAACACTCACGTGGTACACAGA  980

seq1  CACACATGCAGGAAAACACCCATATACATAAAATATAAAAAATAATAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCAGGAAAACACCCATATACATAAAATATAAAAAATAATAAGT  1030

seq1  AACCAGGCATGGTGGTACAAATCTCAGCACTCTGGAGACAGAGGGTGGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCATGGTGGTACAAATCTCAGCACTCTGGAGACAGAGGGTGGCA  1080

seq1  GATCTCTATGAATTCAAGGCCAGCCTGATCTACAGAGTGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTATGAATTCAAGGCCAGCCTGATCTACAGAGTGAATTC  1124