BAC Information

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BAC

Clone NameB6Ng01-138N10
Chromosome2 (Build37)
Map Location 143,063,319 - 143,241,924
singlet/doubletdoublet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N10.bB6Ng01-138N10.g
ACCDH937982DH937983
length1,0401,108
definitionDH937982|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N10, 5' end.DH937983|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,240,878 - 143,241,924)(143,063,319 - 143,064,450)
sequence
gaattctgtgcttatactgaatccatcagagcacactcatgagctttctt
gtcttaattccctgaagaatcactttgaccatgttgagttctaattgtca
gccttccaagcttatccaaggagtgagtaagacatagtccttccttccac
atttatatacagcaatctcaggaactcctacgtaagatttcatacaaaga
atatttttcagaatttaatgccaaggtcgactcattttattcatacatga
tgtatttattttgggacaaaaatttttctaagttttcattcttttcttga
ttcctacgatattcagagcagtgtttcagttcttggaacaaaattaactc
tgattattaagttttattctttcctttacttcaaggtctacaaaattctg
tgtcttagaaggggtcaagtaggtacagagagatgacatttgacatctta
ctcaatgcaccctgtttcaagttctgcagaaacacttactcatccagagc
actgttgacattattttcctctcctttcctaggtgaagaaagttactgtt
attaatagaaccagagtatagttttgagtctgtaggcgatggactgggtc
ctttgatccatgcaatttcctctgtaccaggctgtgatataaacaatgag
ctgtggtaaactcaatctttatctgactcctgagaaaatcctacttagag
atgttccttttgtgtcttttcatactgttagaagaatatataagacttcg
aatcagtgatgtcaccacaatgagatagaagatgttggttgatacaagtg
aaaattagtggtgctgataaagatgattgtgttgatggtgctggagtagc
tcatggtaataactatgatgtgagatgtggtgatgacagtgttgataaga
tgatggtgtgggtaaggatggggctttgcagcatctcagcacaaaagact
ttgcgggaataccaattacttcctcctattcctcgttgtgcttgctttta
agagattgctcctgaaacattatgttatttgaaagttgga
gaattcagtcagaaaccttctactccaacagaattgggcccctgcatgca
ggaattgttcaataaatgctatttgcttttgcatactttttgagtctggg
gtatcattcttcagctatttatggaccctaacaatcctctttccatcttt
ctcttacatctgcttccatgatgtaagcacccccaccccccatcaatgct
tccaccaccatgagccatatgagatgtcctcccaacctttcttcccttca
gttttttttttttttttctgtcaggcattttggtcacagcaacacaaaaa
tagctaatacaagtgacttaattaggactatgctggaacccagctctctg
tcatattatgatttggtcaactctttgtacctaagggtcacctagggaaa
cttcacatatgttcttattactggaagatgtaggaaaacctgctctgagg
ggtcttagctttgtatagaaaaataattcaaaatagattcaggtgaaaac
tcaaggaaaattttattgacatttgagaagaaaaacagtgggcatgagag
ccagagtttttagaagaaagggaggagggagaagctcctgagaagaagga
gatggaagaaaacagagctttctgagttaaagtcatgagaactggagggc
tcagcagaggaagctgcataagagagcttgaggtgtggggtgggggtcct
tcaaagagttagaaagtggtaatgccctgggtccaagggcaagcagggtt
aggatttgggccagcgtgcagataaaaagaggtcttaggagaaaaagtaa
catttctaaaggtttaattcagaattaagaaggcagacagtcttagccat
ggggacttgcaagtatctgtatcatggaagggctctgggaccctcttaag
tacatatttcattagagatagccatcccattttcctgtcatttttccagt
gtatcgtgcatttttctacttctgccaatagaattgtcttcttagactga
aaacagatcctcctccttgcagcagacactcctcctgctcgacaagaagt
cctgctgcttccttaaatgatatcaatctgacatgccattaaagggtggg
tactgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143240878_143241924
seq2: B6Ng01-138N10.b_48_1087 (reverse)

seq1  TTCAACTTTCAAATAAACTATATGTTTCAGAAGCAATCTCTTAAAAGCAA  50
      | ||||||||||||||  || ||||||||| |||||||||||||||||||
seq2  TCCAACTTTCAAATAACATA-ATGTTTCAGGAGCAATCTCTTAAAAGCAA  49

seq1  GCACAACAGAAGGAATAGGAGGAAGTAATTGGTACTCACCGCAAAGTCCT  100
      |||||||   |||||||||||||||||||||||| || ||||||||| ||
seq2  GCACAAC--GAGGAATAGGAGGAAGTAATTGGTATTC-CCGCAAAGT-CT  95

seq1  TTTGTGCTGAGATGCTGCAAAAGCCCCATCCTTACCCACACCATCATTCT  150
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TTTGTGCTGAGATGCTGC-AAAGCCCCATCCTTACCCACACCATCA-TCT  143

seq1  TATCAACACTGTCATCACCACATCTCACATCATAGTTATTACCATGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACACTGTCATCACCACATCTCACATCATAGTTATTACCATGAGCT  193

seq1  ACTCCAGCACCATCAACACAATCATCTTTATCAGCACCACTAATTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCACCATCAACACAATCATCTTTATCAGCACCACTAATTTTCAC  243

seq1  TTGTATCAACCAACATCTTCTATCTCATTGTGGTGACATCACTGATTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAACCAACATCTTCTATCTCATTGTGGTGACATCACTGATTCGA  293

seq1  AGTCTTATATATTCTTCTAACAGTATGAAAAGACACAAAAGGAACATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATATATTCTTCTAACAGTATGAAAAGACACAAAAGGAACATCTC  343

seq1  TAAGTAGGATTTTCTCAGGAGTCAGATAAAGATTGAGTTTACCACAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGGATTTTCTCAGGAGTCAGATAAAGATTGAGTTTACCACAGCTC  393

seq1  ATTGTTTATATCACAGCCTGGTACAGAGGAAATTGCATGGATCAAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATATCACAGCCTGGTACAGAGGAAATTGCATGGATCAAAGGAC  443

seq1  CCAGTCCATCGCCTACAGACTCAAAACTATACTCTGGTTCTATTAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCATCGCCTACAGACTCAAAACTATACTCTGGTTCTATTAATAAC  493

seq1  AGTAACTTTCTTCACCTAGGAAAGGAGAGGAAAATAATGTCAACAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTCTTCACCTAGGAAAGGAGAGGAAAATAATGTCAACAGTGCT  543

seq1  CTGGATGAGTAAGTGTTTCTGCAGAACTTGAAACAGGGTGCATTGAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGAGTAAGTGTTTCTGCAGAACTTGAAACAGGGTGCATTGAGTAA  593

seq1  GATGTCAAATGTCATCTCTCTGTACCTACTTGACCCCTTCTAAGACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAAATGTCATCTCTCTGTACCTACTTGACCCCTTCTAAGACACAG  643

seq1  AATTTTGTAGACCTTGAAGTAAAGGAAAGAATAAAACTTAATAATCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTAGACCTTGAAGTAAAGGAAAGAATAAAACTTAATAATCAGAG  693

seq1  TTAATTTTGTTCCAAGAACTGAAACACTGCTCTGAATATCGTAGGAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGTTCCAAGAACTGAAACACTGCTCTGAATATCGTAGGAATCA  743

seq1  AGAAAAGAATGAAAACTTAGAAAAATTTTTGTCCCAAAATAAATACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATGAAAACTTAGAAAAATTTTTGTCCCAAAATAAATACATCA  793

seq1  TGTATGAATAAAATGAGTCGACCTTGGCATTAAATTCTGAAAAATATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAATAAAATGAGTCGACCTTGGCATTAAATTCTGAAAAATATTCT  843

seq1  TTGTATGAAATCTTACGTAGGAGTTCCTGAGATTGCTGTATATAAATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAAATCTTACGTAGGAGTTCCTGAGATTGCTGTATATAAATGTG  893

seq1  GAAGGAAGGACTATGTCTTACTCACTCCTTGGATAAGCTTGGAAGGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGACTATGTCTTACTCACTCCTTGGATAAGCTTGGAAGGCTGA  943

seq1  CAATTAGAACTCAACATGGTCAAAGTGATTCTTCAGGGAATTAAGACAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAACTCAACATGGTCAAAGTGATTCTTCAGGGAATTAAGACAAG  993

seq1  AAAGCTCATGAGTGTGCTCTGATGGATTCAGTATAAGCACAGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATGAGTGTGCTCTGATGGATTCAGTATAAGCACAGAATTC  1040

seq1: chr2_143063319_143064450
seq2: B6Ng01-138N10.g_67_1174

seq1  GAATTCAGTCAGAAACCTTCTACTCCAACAGAATTGGGCCCCTGCATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGAAACCTTCTACTCCAACAGAATTGGGCCCCTGCATGCA  50

seq1  GGAATTGTTCAATAAATGCTATTTGCTTTTGCATACTTTTTGAGTCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTTCAATAAATGCTATTTGCTTTTGCATACTTTTTGAGTCTGGG  100

seq1  GTATCATTCTTCAGCTATTTATGGACCCTAACAATCCTCTTTCCATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTCTTCAGCTATTTATGGACCCTAACAATCCTCTTTCCATCTTT  150

seq1  CTCTTACATCTGCTTCCATGATGTAAGCACCCCCACCCCCCATCAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACATCTGCTTCCATGATGTAAGCACCCCCACCCCCCATCAATGCT  200

seq1  TCCACCACCATGAGCCATATGAGATGTCCTCCCAACCTTTCTTCCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACCATGAGCCATATGAGATGTCCTCCCAACCTTTCTTCCCTTCA  250

seq1  GTTTTTTTTTTTTTTTTCTGTCAGGCATTTTGGTCACAGCAACACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTCTGTCAGGCATTTTGGTCACAGCAACACAAAAA  300

seq1  TAGCTAATACAAGTGACTTAATTAGGACTATGCTGGAACCCAGCTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATACAAGTGACTTAATTAGGACTATGCTGGAACCCAGCTCTCTG  350

seq1  TCATATTATGATTTGGTCAACTCTTTGTACCTAAGGGTCACCTAGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTATGATTTGGTCAACTCTTTGTACCTAAGGGTCACCTAGGGAAA  400

seq1  CTTCACATATGTTCTTATTACTGGAAGATGTAGGAAAACCTGCTCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATATGTTCTTATTACTGGAAGATGTAGGAAAACCTGCTCTGAGG  450

seq1  GGTCTTAGCTTTGTATAGAAAAATAATTCAAAATAGATTCAGGTGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGCTTTGTATAGAAAAATAATTCAAAATAGATTCAGGTGAAAAC  500

seq1  TCAAGGAAAATTTTATTGACATTTGAGAAGAAAAACAGTGGGCATGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAAATTTTATTGACATTTGAGAAGAAAAACAGTGGGCATGAGAG  550

seq1  CCAGAGTTTTTAGAAGAAAGGGAGGAGGGAGAAGCTCCTGAGAAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTTTTAGAAGAAAGGGAGGAGGGAGAAGCTCCTGAGAAGAAGGA  600

seq1  GATGGAAGAAAACAGAGCTTTCTGAGTTAAAGTCATGAGAACTGGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGAAAACAGAGCTTTCTGAGTTAAAGTCATGAGAACTGGAGGGC  650

seq1  TCAGCAGAGGAAGCTGCATAAGAGAGCTTGAGGTGTGGGGTGGGGGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGGAAGCTGCATAAGAGAGCTTGAGGTGTGGGGTGGGGGTCCT  700

seq1  TCAAAGAGTTAGAAAGTGGTAATGCCCTGGGTCCAAGGGCAAGCAGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGTTAGAAAGTGGTAATGCCCTGGGTCCAAGGGCAAGCAGGGTT  750

seq1  AGGATTTGGGCCAGCGTGCAGATAAAAAGAGGTCTTAGGAGAAAAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGGGCCAGCGTGCAGATAAAAAGAGGTCTTAGGAGAAAAAGTAA  800

seq1  CATTTCT-AAGGTTTAATTCAGAATTAAGAAGGCAGACAGTCTTAGCCAT  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAAAGGTTTAATTCAGAATTAAGAAGGCAGACAGTCTTAGCCAT  850

seq1  GGGGACTTGCAAGTATCTGTATCATGGGAAGGGCTCTGGGACCCTCTTAA  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGGACTTGCAAGTATCTGTATCAT-GGAAGGGCTCTGGGACCCTCTTAA  899

seq1  GTACATATTTCATTAGAGGATAGCCATTCTCAATTTTCCTGTCATTTTTT  949
      ||||||||||||||||| |||||||||   | |||||||||||| |||||
seq2  GTACATATTTCATTAGA-GATAGCCAT--CCCATTTTCCTGTCA-TTTTT  945

seq1  CAAGTGTATCGTGCATTTTTCTACTTCTGGCAATAGAATGGTCTTCTTTA  999
      | ||||||||||||||||||||||||||| ||||||||| |||||| |||
seq2  CCAGTGTATCGTGCATTTTTCTACTTCTGCCAATAGAATTGTCTTC-TTA  994

seq1  GACTGTAAAACAGGATTCTTCTCCTTGCAGCAG-GACATCTCCTGCTTCA  1048
      ||||| |||||| ||| || |||||||||||||  ||  ||||||||   
seq2  GACTG-AAAACA-GATCCTCCTCCTTGCAGCAGACACTCCTCCTGCT--C  1040

seq1  GACAAGGAAAGTTCCTGCTGTCTACATTAATATGGTATTATCAATTTCTG  1098
      ||||||  ||| |||||||| || | |||| |||    ||||||  ||||
seq2  GACAAG--AAG-TCCTGCTG-CTTCCTTAA-ATG---ATATCAA--TCTG  1080

seq1  ACCATGCCATTTAAAAGGGGTGGGGTAACTGACC  1132
      | |||||||||   || |||||||   |||||||
seq2  A-CATGCCATT---AAAGGGTGGG--TACTGACC  1108