BAC Information

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BAC

Clone NameB6Ng01-138O17
Chromosome2 (Build37)
Map Location 100,948,936 - 101,084,120
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138O17.bB6Ng01-138O17.g
ACCDH938041DH938042
length9251,064
definitionDH938041|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O17, 5' end.DH938042|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,948,936 - 100,949,705)(101,083,075 - 101,084,120)
sequence
gaattctcatattcaaactgggttcgtcaatatctatattgtaattggct
ttccactttattggtggaagccacctatgaacgtattaactatatctatc
tatctatctatctatctatctatctatgaatctatctatctatctatcat
ttctgtgtatctagatgcaagtcccccataccctcccccccacttctcta
cccactatggcatctttttatatgttaccctgaagatccactgggataag
gcgatgtgatgggggacgaacgatgggcctctctttccagggatggccga
ctaagccatcttttgatacatatgcagctagagtcaaggaatgtaacaat
aacagtctcaaaatgttttactgtgacattactaaaacaaatatatattt
gggactttgcaaaaatcctgtggtttgaagatatctatagaggatgggaa
ggattcctctgtgggtaaagatgtctcaagccaactgggcgtggtggcat
acgtctttaatcccagcattcaggaggcagaggcaggcagatttctgagt
tcaaggccagcctgttctacaaagtgatttccaggacaaccagggctaca
cagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaaaaaaaaacaa
caacaataacaacaacaacaaaaaaacaaacagatgccccaagccagaca
accaaagctcaaagaacgatatggataagagaaagggggtgggggggact
ctacaaattgtccttagcctacacaggaccactgtggtacaactacatat
ctcaggcccccattaaaagcaagtgatatataaactatctttaaaagcct
gttggaaagagaacagatacttagccatggttaggtgagcaagactaccc
agtggttgtcaactattaaattcta
gaattcatggttttacactccacctgtattcttgagatcaattcaaaaaa
catactgtttgggaaaagaaagaaagaatgaaagaaggaaagaaagagac
tccagagaagcaaagaatgaaagaggggggagggaaagatagagaattga
acactaaagatttcttggatccaaaggttccctcttatctctgcagtaaa
atatccttcctaatcatgtgagttggcagctcagcaggagaagtcttcct
ggaggagctgcatttgaacttcttcttgtcattttctctgtgctcacagt
ggtcaggtaatttacaacatttcttagtggggacaagctggagggcttca
gtaaggtggtacttcattcatatctggattagtacagaggccacaagatc
aaacccagtacaaatactgtagggaaaattgaaatgtataaactcttgag
ccacttggggaaggtttgaaattcttccatgacaaaaaatgaaaacctac
acattctctatgccagaattgccatgtgagggatggcaggtgtgaggtca
gtctggggtttgttgtgagaccccatcttaaaaccaaaaatcaaagttga
cagcaactctgtacagcctattgtaccagctggagccttattcatctcta
gtgtaccctgtctattgatgacagagaccttttcatgtgtttaagctatt
ccacagttgtggtttaaatatgcttgaccgatagggagtactgttgggag
gtgtggtcttatttgaaaaagtatgccattgtgggggtgggctttgactc
agtgtgaaagaggaagtctcctgtttgctttcagaacaagatgtagaact
ctcaatttgcttctccaggcccacatctgccttcgtgctgccatgcttca
tgccttgatgatatggactaaagctcagggcctgtaagccagccctaatg
ccaatgtcttccatattcctattaggatggctcatttagccgctctaaat
cattcttactgctttccaaattccagttcccaaatcaaattcctccgaac
aaaacaatgatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100948936_100949705
seq2: B6Ng01-138O17.b_211_967

seq1  AAGTCCCCCATACCCTCCCCCCCACTTCTCTACCCACTCATTCCCATTTT  50
      ||||||||||||||||||||||||||||||||||||||   |  ||| ||
seq2  AAGTCCCCCATACCCTCCCCCCCACTTCTCTACCCACT--ATGGCATCTT  48

seq1  TTTTTTTG--ACCCTGGTGTTCCCCTGTACTGGGGC-ATATAAAGTTTGT  97
      ||| | ||  ||||||  | ||| |||   |  ||| || | | |   | 
seq2  TTTATATGTTACCCTGAAGATCCACTGGGATAAGGCGATGTGATG-GGGG  97

seq1  GCGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  147
       ||  | |||||||||||||||||| |||||||||||| |||||||||||
seq2  ACGAACGATGGGCCTCTCTTTCCAGGGATGGCCGACTAAGCCATCTTTTG  147

seq1  ATACATATGCAGCTAGAGTCAAGGAATGTAACAATAACAGTCTCAAAATG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGCAGCTAGAGTCAAGGAATGTAACAATAACAGTCTCAAAATG  197

seq1  TTTTACAAGTGACATTACTAAAACAAATATATATTTGGGACTTTGCAAAA  247
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAC-TGTGACATTACTAAAACAAATATATATTTGGGACTTTGCAAAA  246

seq1  ATCCTGTGGTTTGAAGATATCTATAGAGGATGGGAAGGATTCCTCTGTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGTTTGAAGATATCTATAGAGGATGGGAAGGATTCCTCTGTGG  296

seq1  GTAAAGATGTCTCAAGCCAACTGGGCGTGGTGGCATACGTCTTTAATCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATGTCTCAAGCCAACTGGGCGTGGTGGCATACGTCTTTAATCCC  346

seq1  AGCATTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTG  396

seq1  TTCTACAAAGTGATTTCCAGGACAACCAGGGCTACACAGAGAAACCCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAAAGTGATTTCCAGGACAACCAGGGCTACACAGAGAAACCCTGT  446

seq1  CTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAACAACAACAATAACAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAACAACAACAATAACAACA  496

seq1  ACAACAAAAAAACAAACAGATGCCCCAAGCCAGACAACCAAAGCTCAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAAACAAACAGATGCCCCAAGCCAGACAACCAAAGCTCAAAG  546

seq1  AACGATATGGATAAGAGAAAGGGGGTGGGGGGGACTCTACAAATTGTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATATGGATAAGAGAAAGGGGGTGGGGGGGACTCTACAAATTGTCCT  596

seq1  TAGCCTACACAGGACCACTGTGGTACAACTACATATCTCAGGCCCCACAT  647
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGCCTACACAGGACCACTGTGGTACAACTACATATCTCAGGCCCC-CAT  645

seq1  TAAAAGCAAGTGAATATAATAAAACTATCTTTAAAAAGTCATGTAGGAGA  697
      |||||||||||| |||||   |||||||||||||||   | ||| ||| |
seq2  TAAAAGCAAGTG-ATATA--TAAACTATCTTTAAAA--GCCTGTTGGAAA  690

seq1  GAGAACAGATACTATAGCCAATGGTTAGGATGTAGCAAGACTTACCCAGT  747
      ||||||||||||| ||||| ||||||||| || |||||||| ||||||||
seq2  GAGAACAGATACT-TAGCC-ATGGTTAGG-TG-AGCAAGAC-TACCCAGT  735

seq1  -GCTGTCAGACCATTTAAATTCTA  770
       | ||||| || | ||||||||||
seq2  GGTTGTCA-ACTA-TTAAATTCTA  757

seq1: chr2_101083075_101084120
seq2: B6Ng01-138O17.g_87_1130 (reverse)

seq1  CTGATCATGTTTTTGTTCGGAGGAATTTGGATTTGGGGACTGGAGATTTG  50
      ||||||||  |||||||||||||||||| |||||||| |||||| |||||
seq2  CTGATCATTGTTTTGTTCGGAGGAATTT-GATTTGGGAACTGGA-ATTTG  48

seq1  GAAAGCAGT-AGAATGATTTAAGAGCGGCTAAATGAGCCATCCTAATAGG  99
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GAAAGCAGTAAGAATGATTT-AGAGCGGCTAAATGAGCCATCCTAATAGG  97

seq1  AATATGGAAGACATTGGCATTAGGGCTGGCTTACAGGCCCTGAGCTTTAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAAGACATTGGCATTAGGGCTGGCTTACAGGCCCTGAGCTTTAG  147

seq1  TCCATTATCATCAAGGCATGAAGCATGGCAGCACGAAGGCAGATGTGGGC  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCA-TATCATCAAGGCATGAAGCATGGCAGCACGAAGGCAGATGTGGGC  196

seq1  CTGGAGAAGC-AATTGAGAGTTCTACATCTTGTTCTGAAAGCAAACAGGA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGCAAATTGAGAGTTCTACATCTTGTTCTGAAAGCAAACAGGA  246

seq1  GACTTCCTCTTTCACACTGAGTCAAAGCCCACCCCCACAATGGCATACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTCTTTCACACTGAGTCAAAGCCCACCCCCACAATGGCATACTT  296

seq1  TTTCAAATAAGACCACACCTCCCAACAGTACTCCCTATCGGTCAAGCATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATAAGACCACACCTCCCAACAGTACTCCCTATCGGTCAAGCATA  346

seq1  TTTAAACCACAACTGTGGAATAGCTTAAACACATGAAAAGGTCTCTGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCACAACTGTGGAATAGCTTAAACACATGAAAAGGTCTCTGTCA  396

seq1  TCAATAGACAGGGTACACTAGAGATGAATAAGGCTCCAGCTGGTACAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGACAGGGTACACTAGAGATGAATAAGGCTCCAGCTGGTACAATA  446

seq1  GGCTGTACAGAGTTGCTGTCAACTTTGATTTTTGGTTTTAAGATGGGGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTACAGAGTTGCTGTCAACTTTGATTTTTGGTTTTAAGATGGGGTC  496

seq1  TCACAACAAACCCCAGACTGACCTCACACCTGCCATCCCTCACATGGCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAAACCCCAGACTGACCTCACACCTGCCATCCCTCACATGGCAA  546

seq1  TTCTGGCATAGAGAATGTGTAGGTTTTCATTTTTTGTCATGGAAGAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCATAGAGAATGTGTAGGTTTTCATTTTTTGTCATGGAAGAATTT  596

seq1  CAAACCTTCCCCAAGTGGCTCAAGAGTTTATACATTTCAATTTTCCCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTCCCCAAGTGGCTCAAGAGTTTATACATTTCAATTTTCCCTAC  646

seq1  AGTATTTGTACTGGGTTTGATCTTGTGGCCTCTGTACTAATCCAGATATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTACTGGGTTTGATCTTGTGGCCTCTGTACTAATCCAGATATG  696

seq1  AATGAAGTACCACCTTACTGAAGCCCTCCAGCTTGTCCCCACTAAGAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTACCACCTTACTGAAGCCCTCCAGCTTGTCCCCACTAAGAAAT  746

seq1  GTTGTAAATTACCTGACCACTGTGAGCACAGAGAAAATGACAAGAAGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAATTACCTGACCACTGTGAGCACAGAGAAAATGACAAGAAGAAG  796

seq1  TTCAAATGCAGCTCCTCCAGGAAGACTTCTCCTGCTGAGCTGCCAACTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGCAGCTCCTCCAGGAAGACTTCTCCTGCTGAGCTGCCAACTCA  846

seq1  CATGATTAGGAAGGATATTTTACTGCAGAGATAAGAGGGAACCTTTGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTAGGAAGGATATTTTACTGCAGAGATAAGAGGGAACCTTTGGAT  896

seq1  CCAAGAAATCTTTAGTGTTCAATTCTCAAAATT---CTTTTAAAGTTTTC  945
      ||||||||||||||||||||||||||| |  ||   ||        ||||
seq2  CCAAGAAATCTTTAGTGTTCAATTCTCTATCTTTCCCTCCCCCCTCTTTC  946

seq1  AAAATGTAGAGCTCCTCAGGAGTCT-ATGGTTGACCACTGT-GTACTTTG  993
      |   | |   ||| ||| |||||||  |  ||  |  || |  | |||| 
seq2  ATTCTTT---GCTTCTCTGGAGTCTCTTTCTTTCCTTCTTTCATTCTTT-  992

seq1  ACTTTCTCGTCCCAAACAGTATGTTTTTGGAATTGTGACTCAAGAA-GCA  1042
       ||||||  ||||||||||||||||||| ||||||   ||||||||  ||
seq2  -CTTTCTTTTCCCAAACAGTATGTTTTTTGAATTG-ATCTCAAGAATACA  1040

seq1  GGTG  1046
      ||||
seq2  GGTG  1044