BAC Information

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BAC

Clone NameB6Ng01-138P06
Chromosome2 (Build37)
Map Location 153,687,598 - 153,815,078
singlet/doubletdoublet
Overlap geneSpag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477
Upstream geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869
Downstream genePsp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138P06.bB6Ng01-138P06.g
ACCDH938067DH938068
length445530
definitionDH938067|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P06, 5' end.DH938068|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,687,598 - 153,688,048)(153,814,543 - 153,815,078)
sequence
ttttaagggattagagaatggtatgaggccctactatgtgcagaactgtt
ctcagtccatcatgttctctcatcatcctctatggcttcccagagtgatt
gggcaattgtcactccactttcaaagtaagaatagtcctggcacataaga
ataaagcttcagagcccacccagctgtgagaggcagagccagcagcttgc
aggttctgggcccctgaacactctcctggctgggtataggaagactacaa
agaaagcgctgtgcacagccagcgcttggtcagccaaggctagcagttcc
ttttagacagctgcagtggaggccagttttgtttccgtaacagctgcaat
agggtctgctcttcaaagctctatttttaaaatctgactctgatatcttc
tcagagaagtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
acttggatcccagtgaatactgcccggcagctcttcacggaaaaggacat
ttgaccaggttccatctgttgcaattgcaaggggatctcgatgtccacat
ccactgtggagccactgagaaatgagagtatcctagttgcgtgggagagg
gctgttagaagctgaatgcatgtctgggaataatactctaaaaggtttca
ctgggacttgcaaacaggtctgggcatttatggctgagaggtaactgata
cacatactttaaaaaaaaaggattcctgatggcctatattttaattatat
atatatatatatatatcaaatacatatatatatatattcaatgaaataat
ctattgaagtaaatgcttatgcatagctcaagactcattttaaaaatgag
tctagtgaaaggctacttctttctctgtctgcctagagctctgccaaact
catgcacatctctcatattaatatctcctcctggacttatatgcacactt
acaaccacccatgtcgaatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153687598_153688048
seq2: B6Ng01-138P06.b_49_499

seq1  GAATTCTTTTAAGGGATTAGAGAATGGTATGAGGCCCTACTATGTGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAGGGATTAGAGAATGGTATGAGGCCCTACTATGTGCAGA  50

seq1  ACTGTTCTCAGTCCATCATGTTCTCTCATCATCCTCTATGGCTTCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCAGTCCATCATGTTCTCTCATCATCCTCTATGGCTTCCCAGA  100

seq1  GTGATTGGGCAATTGTCACTCCACTTTCAAAGTAAGAATAGTCCTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGGGCAATTGTCACTCCACTTTCAAAGTAAGAATAGTCCTGGCAC  150

seq1  ATAAGAATAAAGCTTCAGAGCCCACCCAGCTGTGAGAGGCAGAGCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATAAAGCTTCAGAGCCCACCCAGCTGTGAGAGGCAGAGCCAGCA  200

seq1  GCTTGCAGGTTCTGGGCCCCTGAACACTCTCCTGGCTGGGTATAGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGGTTCTGGGCCCCTGAACACTCTCCTGGCTGGGTATAGGAAGA  250

seq1  CTACAAAGAAAGCGCTGTGCACAGCCAGCGCTTGGTCAGCCAAGGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGAAAGCGCTGTGCACAGCCAGCGCTTGGTCAGCCAAGGCTAGC  300

seq1  AGTTCCTTTTAGACAGCTGCAGTGGAGGCCAGTTTTGTTTCCGTAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTTAGACAGCTGCAGTGGAGGCCAGTTTTGTTTCCGTAACAGC  350

seq1  TGCAATAGGGTCTGCTCTTCAAAGCTCTATTTTTAAAATCTGACTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGGGTCTGCTCTTCAAAGCTCTATTTTTAAAATCTGACTCTGAT  400

seq1  ATCTTCTCAGAGAAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCAGAGAAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450

seq1  G  451
      |
seq2  G  451

seq1: chr2_153814543_153815078
seq2: B6Ng01-138P06.g_70_605 (reverse)

seq1  CACACACACACATTCGACATGGGTGGTTGTAAGTGTGCATATAAGTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATTCGACATGGGTGGTTGTAAGTGTGCATATAAGTCCAG  50

seq1  GAGGAGATATTAATATGAGAGATGTGCATGAGTTTGGCAGAGCTCTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATATTAATATGAGAGATGTGCATGAGTTTGGCAGAGCTCTAGGC  100

seq1  AGACAGAGAAAGAAGTAGCCTTTCACTAGACTCATTTTTAAAATGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAAAGAAGTAGCCTTTCACTAGACTCATTTTTAAAATGAGTCT  150

seq1  TGAGCTATGCATAAGCATTTACTTCAATAGATTATTTCATTGAATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATGCATAAGCATTTACTTCAATAGATTATTTCATTGAATATATA  200

seq1  TATATATGTATTTGATATATATATATATATATATAATTAAAATATAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATTTGATATATATATATATATATATAATTAAAATATAGGCC  250

seq1  ATCAGGAATCCTTTTTTTTTAAAGTATGTGTATCAGTTACCTCTCAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAATCCTTTTTTTTTAAAGTATGTGTATCAGTTACCTCTCAGCCA  300

seq1  TAAATGCCCAGACCTGTTTGCAAGTCCCAGTGAAACCTTTTAGAGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCCAGACCTGTTTGCAAGTCCCAGTGAAACCTTTTAGAGTATTA  350

seq1  TTCCCAGACATGCATTCAGCTTCTAACAGCCCTCTCCCACGCAACTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGACATGCATTCAGCTTCTAACAGCCCTCTCCCACGCAACTAGGA  400

seq1  TACTCTCATTTCTCAGTGGCTCCACAGTGGATGTGGACATCGAGATCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCATTTCTCAGTGGCTCCACAGTGGATGTGGACATCGAGATCCCC  450

seq1  TTGCAATTGCAACAGATGGAACCTGGTCAAATGTCCTTTTCCGTGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTGCAACAGATGGAACCTGGTCAAATGTCCTTTTCCGTGAAGAG  500

seq1  CTGCCGGGCAGTATTCACTGGGATCCAAGTGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGGCAGTATTCACTGGGATCCAAGTGAATTC  536