BAC Information

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BAC

Clone NameB6Ng01-139B23
Chromosome2 (Build37)
Map Location 93,961,131 - 94,070,137
singlet/doubletdoublet
Overlap geneHsd17b12
Upstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139B23.bB6Ng01-139B23.g
ACCDH938190DH938191
length1,1001,082
definitionDH938190|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B23, 5' end.DH938191|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,961,131 - 93,962,233)(94,069,044 - 94,070,137)
sequence
gaattcatcagggcttcacagaagcctgcagccataattaagcctctctg
ccctgtgcccttgccatgcaaagaactgtattcctgaggtacagcaagtc
attggactggagaacactttcatagtacaagcaagcttgttggcaccttg
atcttggactttccagcatgaagcaccatgaggacttaggtttctggctt
tctaaatttctgcagctactctggcagatcaaatggactgagccattcac
agcaagagttctgcttccatcttggaggttttcacttgaacatccttgcc
ccttccttaacaaccagactatcaagatctcacaattctctataattctc
cttatgacattagtaacttagggttccacaggactgggtctgtctgggtc
tccagaatttaactgataggacagtcactggtttaaaaaagaaaagcaaa
agataatttaggctggaaagacagctcaatggttaagagcacttgtgact
cttacagacaatctgagtttggtcccagaaccaacatgatgatttataaa
ccatgtacaattccagttccagggaacccaattcccttttctgacctcaa
tggacaggcatacacatatatacatatatatacacacacatatacacata
catgtgtatgtatatatatgtgtgtgtatatatatatatgtatataatag
acacatacatgcaagcaaaacacagacataaaattatcttaacaagatga
ttcttgaggctttgctgaagaatagaaggatacatgaatgaatgaatgaa
aaagattctgaatggaaagctggcttcttgcaacaagactcactgttttc
attcacttccttatttggaataacacactgcacctcctcttcaacatcac
acaagaatctaccatcttaaaatgagattttttaaaaatggtattttcaa
gacgctttaacttgtttataatgaacttgttagatatatacttcaaggga
gtctaatggattttccttggaaggagctggtctgcatgacccatcccaat
agatagaaaggaaaggaacccatttagatagtaagggattccaagtcact

gaattcattctaaactggctccatctttcttactgccatgtctgagcaca
ggtacaagcaggggcactatctttctctacctgagtctttccccatcttt
ctgtaggttgttcatatatccctactggggaaatggtggcttatagagag
ggaatcgttattctttctcttcaagggtctagaacattttttaaatgtta
catactgttggagactgatatacatttcactgagactagaataaggaggc
tgagttctcagaaaactctccacggttaaggggagagtgcatcgtcagcc
agggactacatcagaaaggacaaaatacagagagatatagggagctgact
tcaacatcttggcccggtaacatgatggaaatgctggaattgtacaatca
ggatgggttttcatgccattaatttcataatgactattttgtttattcac
aaatgtaagactatgtacatgtactctctatgtctctgcatctgtctgtc
tctctgcctcctctctctctctctctctctctctctctctctctctctct
ctctctctcgcacacacacacacacacacacacacacacacacacacaca
cacagatccaagctcatatttctcatctggaatatggaatttaacatttg
tgcccagggaaattcagtgtgaacatagagctgcatgctggctcaggatg
aattagaagatagaaattctaaatttcccttaaaatcaaggtggaaacct
gctacatacataactaaacactagccatatttttgacatgagatagtctt
ttgttcaaaagtaagtcaccctcaaatctaatgtaatccctggaaccctt
ctgagtctttaaaaacctttgttatagtatataaatttacatctaacata
ccaaaccaaatatctttgataaattttatctccagtcttgaatatagaga
ttcaaactatggcctagagaagctcctgtctagaatttttcagtacaatt
atcttgctaaaataaatgccattgtcaattttctctctttgtaaaggaaa
aggaatggatcttcctcttttgagatcttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93961131_93962233
seq2: B6Ng01-139B23.b_45_1144

seq1  GAATTCATCAGGGCTTCACAGAAGCCTGCAGCCATAATTAAGCCTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGGCTTCACAGAAGCCTGCAGCCATAATTAAGCCTCTCTG  50

seq1  CCCTGTGCCCTTGCCATGCAAAGAACTGTATTCCTGAGGTACAGCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCCTTGCCATGCAAAGAACTGTATTCCTGAGGTACAGCAAGTC  100

seq1  ATTGGACTGGAGAACACTTTCATAGTACAAGCAAGCTTGTTGGCACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTGGAGAACACTTTCATAGTACAAGCAAGCTTGTTGGCACCTTG  150

seq1  ATCTTGGACTTTCCAGCATGAAGCACCATGAGGACTTAGGTTTCTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGACTTTCCAGCATGAAGCACCATGAGGACTTAGGTTTCTGGCTT  200

seq1  TCTAAATTTCTGCAGCTACTCTGGCAGATCAAATGGACTGAGCCATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTTCTGCAGCTACTCTGGCAGATCAAATGGACTGAGCCATTCAC  250

seq1  AGCAAGAGTTCTGCTTCCATCTTGGAGGTTTTCACTTGAACATCCTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTTCTGCTTCCATCTTGGAGGTTTTCACTTGAACATCCTTGCC  300

seq1  CCTTCCTTAACAACCAGACTATCAAGATCTCACAATTCTCTATAATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTAACAACCAGACTATCAAGATCTCACAATTCTCTATAATTCTC  350

seq1  CTTATGACATTAGTAACTTAGGGTTCCACAGGACTGGGTCTGTCTGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACATTAGTAACTTAGGGTTCCACAGGACTGGGTCTGTCTGGGTC  400

seq1  TCCAGAATTTAACTGATAGGACAGTCACTGGTTTAAAAAAGAAAAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATTTAACTGATAGGACAGTCACTGGTTTAAAAAAGAAAAGCAAA  450

seq1  AGATAATTTAGGCTGGAAAGACAGCTCAATGGTTAAGAGCACTTGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTAGGCTGGAAAGACAGCTCAATGGTTAAGAGCACTTGTGACT  500

seq1  CTTACAGACAATCTGAGTTTGGTCCCAGAACCAACATGATGATTTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACAATCTGAGTTTGGTCCCAGAACCAACATGATGATTTATAAA  550

seq1  CCATGTACAATTCCAGTTCCAGGGAACCCAATTCCCTTTTCTGACCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACAATTCCAGTTCCAGGGAACCCAATTCCCTTTTCTGACCTCAA  600

seq1  TGGACAGGCATACACATATATACATATATATACACACACATATACACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGCATACACATATATACATATATATACACACACATATACACATA  650

seq1  CATGTGTATGTATATATATGTGTGTGTATATATATATATGTATATAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGTGTATGTATATATATGTGTGTGTATATATATATATGTATATAATAG  700

seq1  ACACATACATGCAAGCAAAACACAGACATAAAATTATCTTAACAAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATGCAAGCAAAACACAGACATAAAATTATCTTAACAAGATGA  750

seq1  TTCTTGAGGCTTTGCTGAAGAATAGAAGGATACATGAATGAATGAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGGCTTTGCTGAAGAATAGAAGGATACATGAATGAATGAATGAA  800

seq1  AAAGATTCTGAATGGAAAGCTGGCTTCTTGCAACAAGACTCACTG-TTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGATTCTGAATGGAAAGCTGGCTTCTTGCAACAAGACTCACTGTTTTC  850

seq1  ATTCAC-TCCTTATTTGGAAATAACACACTGCACCTCCTC-TCAACATCA  897
      |||||| ||||||||||| ||||||||||||||||||||| |||||||||
seq2  ATTCACTTCCTTATTTGG-AATAACACACTGCACCTCCTCTTCAACATCA  899

seq1  CACAAGAATCTACCATC-TAAAATGAGATTTTTTTAAAAAATGTAATTTC  946
      ||||||||||||||||| |||||||||| |||||||||||  ||| ||||
seq2  CACAAGAATCTACCATCTTAAAATGAGA-TTTTTTAAAAATGGTATTTTC  948

seq1  AAGACGC-TTAACTTGTTTATAATGAACTTGTTAGATATATACTTTCAAA  995
      ||||||| ||||||||||||||||||||||||||||||||||| ||||| 
seq2  AAGACGCTTTAACTTGTTTATAATGAACTTGTTAGATATATAC-TTCAAG  997

seq1  GGAGTCT-ATGGA-TTTCCTTGAAAGGAGCTGGTCTGCAGTGACCCATCC  1043
      ||||||| ||||| |||||||| |||||||||||||||| ||||||||||
seq2  GGAGTCTAATGGATTTTCCTTGGAAGGAGCTGGTCTGCA-TGACCCATCC  1046

seq1  CAAACAGAATTAGAAAGGAAAAGTACCCATTTTAGATTAGTAAAGGATTC  1093
      | || |||  ||||||||||| | ||||| |||||| |||||| ||||||
seq2  C-AATAGA--TAGAAAGGAAAGGAACCCA-TTTAGA-TAGTAAGGGATTC  1091

seq1  CAAGTTCACT  1103
      |||| |||||
seq2  CAAG-TCACT  1100

seq1: chr2_94069044_94070137
seq2: B6Ng01-139B23.g_71_1152 (reverse)

seq1  CTGATGATCTCCAAAGA-GAAGATCAATTTCTTTTTCTTTTTACAAGAGT  49
      |||| |||||| ||||| ||||||| ||| ||||| |  ||||||| || 
seq2  CTGAAGATCTCAAAAGAGGAAGATCCATTCCTTTTCC--TTTACAA-AGA  47

seq1  GAGAAATTTGACAATTGCATTTATTTTTAGCAAGATATTGATACTGAAAT  99
      |||||| |||||||| ||||||| ||||||||||||| |  |||||||| 
seq2  GAGAAAATTGACAATGGCATTTA-TTTTAGCAAGATAATTGTACTGAAAA  96

seq1  ATTCTAGACAGGGGCTTCTCCTAGGCCATAGTTTGAATTCTCTTATATTC  149
      |||||||||||| |||||| ||||||||||||||||| |||| |||||||
seq2  ATTCTAGACAGGAGCTTCT-CTAGGCCATAGTTTGAA-TCTC-TATATTC  143

seq1  AAGACTGGAGATTAAAATTTTATTCAAAGATATTTTGGTTTGGTATTGTT  199
      ||||||||||| ||||||||   ||||||||| |||||||||||| ||||
seq2  AAGACTGGAGA-TAAAATTT--ATCAAAGATA-TTTGGTTTGGTA-TGTT  188

seq1  AGATGTAAATTTATAATACTATAACAAAGGTTTTTAAAGACTCAGAAGGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATGTAAATTTAT-ATACTATAACAAAGGTTTTTAAAGACTCAGAAGGG  237

seq1  TTCCAGGGATTACATTAGATTTGAGGGTGACTTACTTTTGAACAAAAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGATTACATTAGATTTGAGGGTGACTTACTTTTGAACAAAAGAC  287

seq1  TATCTCATGTCAAAAATATGGCTAGTGTTTAGTTATGTATGTAGCAGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATGTCAAAAATATGGCTAGTGTTTAGTTATGTATGTAGCAGGTT  337

seq1  TCCACCTTGATTTTAAGGGAAATTTAGAATTTCTATCTTCTAATTCATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTGATTTTAAGGGAAATTTAGAATTTCTATCTTCTAATTCATCC  387

seq1  TGAGCCAGCATGCAGCTCTATGTTCACACTGAATTTCCCTGGGCACAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCATGCAGCTCTATGTTCACACTGAATTTCCCTGGGCACAAAT  437

seq1  GTTAAATTCCATATTCCAGATGAGAAATATGAGCTTGGATCTGTGTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCCATATTCCAGATGAGAAATATGAGCTTGGATCTGTGTGTGT  487

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGAGAGAGAGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGAGAGAGAGAGA  537

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGCAGAGAGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGCAGAGAGACAG  587

seq1  ACAGATGCAGAGACATAGAGAGTACATGTACATAGTCTTACATTTGTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCAGAGACATAGAGAGTACATGTACATAGTCTTACATTTGTGAA  637

seq1  TAAACAAAATAGTCATTATGAAATTAATGGCATGAAAACCCATCCTGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAATAGTCATTATGAAATTAATGGCATGAAAACCCATCCTGATT  687

seq1  GTACAATTCCAGCATTTCCATCATGTTACCGGGCCAAGATGTTGAAGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTCCAGCATTTCCATCATGTTACCGGGCCAAGATGTTGAAGTCA  737

seq1  GCTCCCTATATCTCTCTGTATTTTGTCCTTTCTGATGTAGTCCCTGGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTATATCTCTCTGTATTTTGTCCTTTCTGATGTAGTCCCTGGCTG  787

seq1  ACGATGCACTCTCCCCTTAACCGTGGAGAGTTTTCTGAGAACTCAGCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCACTCTCCCCTTAACCGTGGAGAGTTTTCTGAGAACTCAGCCTC  837

seq1  CTTATTCTAGTCTCAGTGAAATGTATATCAGTCTCCAACAGTATGTAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTAGTCTCAGTGAAATGTATATCAGTCTCCAACAGTATGTAACA  887

seq1  TTTAAAAAATGTTCTAGACCCTTGAAGAGAAAGAATAACGATTCCCTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATGTTCTAGACCCTTGAAGAGAAAGAATAACGATTCCCTCTC  937

seq1  TATAAGCCACCATTTCCCCAGTAGGGATATATGAACAACCTACAGAAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCACCATTTCCCCAGTAGGGATATATGAACAACCTACAGAAAGA  987

seq1  TGGGGAAAGACTCAGGTAGAGAAAGATAGTGCCCCTGCTTGTACCTGTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGACTCAGGTAGAGAAAGATAGTGCCCCTGCTTGTACCTGTGC  1037

seq1  TCAGACATGGCAGTAAGAAAGATGGAGCCAGTTTAGAATGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGGCAGTAAGAAAGATGGAGCCAGTTTAGAATGAATTC  1082