BAC Information

Click to search

BAC

Clone NameB6Ng01-139E18
Chromosome2 (Build37)
Map Location 120,567,048 - 120,676,408
singlet/doubletdoublet
Overlap geneTtbk2
Upstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1
Downstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139E18.bB6Ng01-139E18.g
ACCDH938318DH938319
length1,11195
definitionDH938318|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E18, 5' end.DH938319|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,567,048 - 120,568,186)(120,676,314 - 120,676,408)
sequence
gaattcccattcttcttataaattagcttgtctctagtaaatgactgtaa
gaacaataagctgactaatatgtaaaattttaaataaagaatgtgtgtta
tgaactttttctttataccaggaacctaccccacctagaaaacaactgta
ctagaagagtcaaatgtaattatttataaatttgaagtacattaaaggct
tgcaacccacacaggaaaacttgggcataaattgcagttggttttggtca
gtttcagattttagcaaggcagttgttactcatctccaccttcagcacca
tggcagtcaactctgtactagcttctaaagccgtctgtacacaatgtaca
ggaaccagggtaggcaaaccaacgaacaccacccacaccgccccccagtc
cttaggctgtaaacaggctagggaactaagagtacagtgcttcttcctaa
agaccagagtttagttctcagcactcgacctgggcaactcgtgaccacgt
ggacctccagctacaggagatccaacactctcttctggcctccaagggca
cctacacatggcatacatgccacactcactcccccaactgaaggtaaaaa
taaagtctttgggaaaaaaagtttgtttggagactgtactctcattgctt
tgtttgtcaacaaaggcctcgttcatctgagaacagccacaagtaaggcc
aacatatctgctgaggaaaacagcaggcacggtgtcagcaggctgatgcc
catgagcttggagtttctgaataataaattcgcaataaaaacagtaagtt
gttacaacttgtatcacttcaaactggggaggataatttccttagatgtc
ttgggagtattcaacattcattatatttttatgagataaagaaataagct
aacctgtatacaaagctgaatagaaaatgaccaatgccgggcgatggtgg
cgcacgtctttagtccagcacttgggagcaggcagatttctgagtttgag
ccagctggtctacagagtgagtacaggacgaaccctgtctcgaaacaaac
aaacaaacaaaaaggaaaaagaacgacatacaaagctacaatttactcgc
ctagttagtac
ccaagcacacgcgcactgtcattgtgatgctcctttcccggtaactcgcc
ctctcaggcaaacctgaagatagcggcaattctccggtggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120567048_120568186
seq2: B6Ng01-139E18.b_49_1159

seq1  GAATTCCCATTCTTCTTATAAATTAGCTTGTCTCTAGTAAATGACTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTCTTCTTATAAATTAGCTTGTCTCTAGTAAATGACTGTAA  50

seq1  GAACAATAAGCTGACTAATATGTAAAATTTTAAATAAAGAATGTGTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAAGCTGACTAATATGTAAAATTTTAAATAAAGAATGTGTGTTA  100

seq1  TGAACTTTTTCTTTATACCAGGAACCTACCCCACCTAGAAAACAACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTTCTTTATACCAGGAACCTACCCCACCTAGAAAACAACTGTA  150

seq1  CTAGAAGAGTCAAATGTAATTATTTATAAATTTGAAGTACATTAAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAGTCAAATGTAATTATTTATAAATTTGAAGTACATTAAAGGCT  200

seq1  TGCAACCCACACAGGAAAACTTGGGCATAAATTGCAGTTGGTTTTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCACACAGGAAAACTTGGGCATAAATTGCAGTTGGTTTTGGTCA  250

seq1  GTTTCAGATTTTAGCAAGGCAGTTGTTACTCATCTCCACCTTCAGCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGATTTTAGCAAGGCAGTTGTTACTCATCTCCACCTTCAGCACCA  300

seq1  TGGCAGTCAACTCTGTACTAGCTTCTAAAGCCGTCTGTACACAATGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCAACTCTGTACTAGCTTCTAAAGCCGTCTGTACACAATGTACA  350

seq1  GGAACCAGGGTAGGCAAACCAACGAACACCACCCACACCGCCCCCCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGGGTAGGCAAACCAACGAACACCACCCACACCGCCCCCCAGTC  400

seq1  CTTAGGCTGTAAACAGGCTAGGGAACTAAGAGTACAGTGCTTCTTCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTGTAAACAGGCTAGGGAACTAAGAGTACAGTGCTTCTTCCTAA  450

seq1  AGACCAGAGTTTAGTTCTCAGCACTCGACCTGGGCAACTCGTGACCACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAGTTTAGTTCTCAGCACTCGACCTGGGCAACTCGTGACCACGT  500

seq1  GGACCTCCAGCTACAGGAGATCCAACACTCTCTTCTGGCCTCCAAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCAGCTACAGGAGATCCAACACTCTCTTCTGGCCTCCAAGGGCA  550

seq1  CCTACACATGGCATACATGCCACACTCACTCCCCCAACTGAAGGTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATGGCATACATGCCACACTCACTCCCCCAACTGAAGGTAAAAA  600

seq1  TAAAGTCTTTGGGAAAAAAAGTTTGTTTGGAGACTGTACTCTCATTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTTGGGAAAAAAAGTTTGTTTGGAGACTGTACTCTCATTGCTT  650

seq1  TGTTTGTCAACAAAGGCCTCGTTCATCTGAGAACAGCCACAAGTAAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCAACAAAGGCCTCGTTCATCTGAGAACAGCCACAAGTAAGGCC  700

seq1  AACATATCTGCTGAGGAAAACAGCAGGCACGGTGTCAGCAGGCTGATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTGCTGAGGAAAACAGCAGGCACGGTGTCAGCAGGCTGATGCC  750

seq1  CATGAGCTTGGAGTTTCTGAATAATAAATTCGCAATAAAAACAGTAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTTGGAGTTTCTGAATAATAAATTCGCAATAAAAACAGTAAGTT  800

seq1  GTTACAACTTGTATCACTTCAAACTGGGGAGGATAATTTCCTTAGATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACTTGTATCACTTCAAACTGGGGAGGATAATTTCCTTAGATGTC  850

seq1  TTGGGAGTATTCAACATTCATTATATTTTTATGAGATAAAGAAATAAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTATTCAACATTCATTATATTTTTATGAGATAAAGAAATAAGCT  900

seq1  AACCTGTATACAAAGCTGAATAGAAAAATGACCAATGCCGGGCGATGGTG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACCTGTATACAAAGCTGAATAG-AAAATGACCAATGCCGGGCGATGGTG  949

seq1  GCGCACGTCTTTAGTCCCAGCACTTGGGAGGCAGGCAGATTTCTGAGTTT  1000
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  GCGCACGTCTTTAGT-CCAGCACTTGGGA-GCAGGCAGATTTCTGAGTTT  997

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTACCAGGACGAAACCCTGTCTCGA  1050
      || ||||| ||||||||||||||||||| ||||||| |||||||||||| 
seq2  GA-GCCAG-CTGGTCTACAGAGTGAGTA-CAGGACG-AACCCTGTCTCG-  1042

seq1  AAAACAAAACAAAACAAAAACCAAAAAAAGAAAAAAGAAAAACGACCAAT  1100
       |||||||   ||||||     | |||||| ||||||   ||||||  ||
seq2  -AAACAAA--CAAACAA-----ACAAAAAGGAAAAAG---AACGAC--AT  1079

seq1  AACAAAAGCTACAAATTTACATTCTGCTCTAGTTAGTAC  1139
      |   |||||||| |||||||  || || |||||||||||
seq2  A--CAAAGCTAC-AATTTAC--TC-GC-CTAGTTAGTAC  1111

seq1: chr2_120676314_120676408
seq2: B6Ng01-139E18.g_71_165 (reverse)

seq1  GCCCCCCACCGGAGAATTGCCGCTATCTTCAGGTTTGCCTGAGAGGGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCACCGGAGAATTGCCGCTATCTTCAGGTTTGCCTGAGAGGGCGA  50

seq1  GTTACCGGGAAAGGAGCATCACAATGACAGTGCGCGTGTGCTTGG  95
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCGGGAAAGGAGCATCACAATGACAGTGCGCGTGTGCTTGG  95