BAC Information

Click to search

BAC

Clone NameB6Ng01-139H18
Chromosome2 (Build37)
Map Location 58,147,581 - 58,288,415
singlet/doubletdoublet
Overlap geneAcvr1c, LOC667062
Upstream geneGpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926
Downstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4, LOC625354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139H18.bB6Ng01-139H18.g
ACCDH938454DH938455
length1,1111,026
definitionDH938454|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H18, 5' end.DH938455|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,287,291 - 58,288,415)(58,147,581 - 58,148,615)
sequence
gaattctgtcttacaagccatttgctctatgttaaacatttacgagtttc
acactaactcatatagtcctttaatatggctgtttctcagagtggcctcg
tgagaggcatttacgatcccagctgctgatggggaaattgaaatgtggag
aactgcatcttctgaatccttacctccatggcattgccctctagcttcag
agttttgtcctgtgcacgctgctgcgctcgaattcctccaccgcagtgac
ttcatctcttgccctggctttgtccccgcacgcgcatgcgtcttcccatg
ccgtggctgggtttatggctcctaggccagaagtgatttcactacctgtc
cagcagagaaactgtccttatctgtgtgtagctttcggccctgggctgtt
cccaccgctgctttttcttctagaaagcttccccatagcaggtatcattt
catgtgtacttggtagttaataaatagtggttgtttgccctcctttctta
atgcacgcagaataataatgccataaacactgctggaccttgccgtggga
ctttttcctagggctttttccattcagacattttgttttgttttgttttc
attgttgccattgtgttcattgctggacattaaacttagaggctcgcaca
aaagctgacaagagccttatcattccgattccaaaacaccagagcttttc
catttaatcagcaagagaggcagagacgaacatgaggccttgggtcagga
aaacactggttagtacatgcgcaaatacattctagcttattgaagaatga
tgaccctgtcttggaaaatttcctgtttttataatccatatgagaattct
gggttgctgtgtaaaactgatcaaatttaaaggaccgtgcggactccaga
gaatctgaagttcagaatttctacatgaattttgccttataagggaacaa
agtaagtgtttagttatgcatggcttgttttacattcataggcacacaaa
ttgcatataatcctcagtgacagttgccagcatggtaaacagaaagaggc
ccatcaatgagtttagcaagatttcagtgaggtgacaagcagagaaagac
agaaccagaaa
gaattctacagcaggatattgatgacataaaaatatgtcataaattaaaa
caaagagataatacaatgataggctcaatgactttcacaatgatatgtcc
tttcatttttataagaattggttattcacttgtttaactctgagtttgaa
tatatgtagaaaaggccatatggaatctgcattaaaaaaataaatattcc
gggaattaaaaaacaaaacaaaacaacaacaacaacagcaaaccctaaac
ccaaagaagctgcagtggacatctaagaagacatcaggatagttttcttc
ttcatctaacactctccttttttaaagtgggatttttttttcttacaata
tattttgatcatgttttcccctcccccaccttctccccactcaactccat
gtccttccccttctctcctccccccatcgctatctctctatgcttgcaat
gtgtgtacgtgtgtggtgtgtgtgtttctctctctctccctcccccactt
cctcacacacacagacacaagaaaagcagaaagtaaaataggatgtagta
aagtgataaagaagaaaataaaggccttttgaaaaactatacagaaccct
actactgtaatccttcgggcgatttctatccacgacttcatttattctgt
cccgcagtgagcactttagttgatgagttcacatgggacactttgatcaa
aaccattgttcatttatttttaaacaagagtcggcttgctgcaaatatgc
acgtaccagagcctgagccagaggcagtagcatcgtagatcagatccttg
agtgtttttcctgcattcacaaggctgtactcagccagcgcttcctccac
gttgtgtctcttagtcttcctgtatgtgcactggcggtcctggcacgccc
atattgttagcatggcggctatggacaggaggcaaaccggcacggtgata
caccgtcagctctgtgggaccagtcgaggggcatttggcgatgctgcgtt
taaggaagatggaaaaccataaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58287291_58288415
seq2: B6Ng01-139H18.b_49_1159 (reverse)

seq1  TTTCTGGTTTCTGTCTTTTCTCTGCTTTGTCACCTCCACTTGAAATCTTT  50
      ||||||| ||||||| ||||||||| ||||||||| ||| ||||||| ||
seq2  TTTCTGG-TTCTGTC-TTTCTCTGC-TTGTCACCT-CAC-TGAAATC-TT  44

seq1  GCTTAAACTTCATTTGATTGGGCCTCTTTCTGTATACCATGCTGGCCACT  100
      || ||||| ||| |||| ||||||||||||||| |||||||||||| |||
seq2  GC-TAAAC-TCA-TTGA-TGGGCCTCTTTCTGTTTACCATGCTGGCAACT  90

seq1  GTCACTTGAGGATTTATATGCAATTTGTGTGCCTATGGATGTTAAACAAA  150
      ||||| |||||| |||||||||||||||||||||||| |||| |||||| 
seq2  GTCAC-TGAGGA-TTATATGCAATTTGTGTGCCTATGAATGTAAAACAAG  138

seq1  CCATGCATAACTAAACACTTACTTTGTTCCCTTATAAGGCAAAATTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATAACTAAACACTTACTTTGTTCCCTTATAAGGCAAAATTCATG  188

seq1  TAGAAATTCTGAACTTCAGATTCTCTGGAGTCCGCACGGTCCTTTAAATT  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGAAATTCTGAACTTCAGATTCTCTGGAGTCCGCACGGTCCTTTAAA-T  237

seq1  TTGATCAGTTTTACACAGCAACCCAGAATTCTCATATGGATTATAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGTTTTACACAGCAACCCAGAATTCTCATATGGATTATAAAAAC  287

seq1  AGGAAAATTTTCCAAGACAGGGTCATCATTCTTCAATAAGCTAGAATGTA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-AAATTTTCCAAGACAGGGTCATCATTCTTCAATAAGCTAGAATGTA  336

seq1  TTTGCGCATGTACTAACCAGTGTTTCCCTGACCCAAGGCCTCATGTTCGT  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGCGCATGTACTAACCAGTGTTTTCCTGACCCAAGGCCTCATGTTCGT  386

seq1  CTCTGCCTCTCTTGCTGATTAAATGGAAAAGCTCTGGTGTTTTGGAATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTCTTGCTGATTAAATGGAAAAGCTCTGGTGTTTTGGAATCG  436

seq1  GAATGATAAGGCTCTTGTCAGCTTTTGTGCGAGCCTCTAAGTTTAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATAAGGCTCTTGTCAGCTTTTGTGCGAGCCTCTAAGTTTAATGTC  486

seq1  CAGCAATGAACACAATGGCAACAATGAAAACAAAACAAAACAAAATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGAACACAATGGCAACAATGAAAACAAAACAAAACAAAATGTCT  536

seq1  GAATGGAAAAAGCCCTAGGAAAAAGTCCCACGGCAAGGTCCAGCAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAAAAGCCCTAGGAAAAAGTCCCACGGCAAGGTCCAGCAGTGTT  586

seq1  TATGGCATTATTATTCTGCGTGCATTAAGAAAGGAGGGCAAACAACCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCATTATTATTCTGCGTGCATTAAGAAAGGAGGGCAAACAACCACT  636

seq1  ATTTATTAACTACCAAGTACACATGAAATGATACCTGCTATGGGGAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAACTACCAAGTACACATGAAATGATACCTGCTATGGGGAAGCT  686

seq1  TTCTAGAAGAAAAAGCAGCGGTGGGAACAGCCCAGGGCCGAAAGCTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAGAAAAAGCAGCGGTGGGAACAGCCCAGGGCCGAAAGCTACAC  736

seq1  ACAGATAAGGACAGTTTCTCTGCTGGACAGGTAGTGAAATCACTTCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAGGACAGTTTCTCTGCTGGACAGGTAGTGAAATCACTTCTGGC  786

seq1  CTAGGAGCCATAAACCCAGCCACGGCATGGGAAGACGCATGCGCGTGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCCATAAACCCAGCCACGGCATGGGAAGACGCATGCGCGTGCGG  836

seq1  GGACAAAGCCAGGGCAAGAGATGAAGTCACTGCGGTGGAGGAATTCGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGCCAGGGCAAGAGATGAAGTCACTGCGGTGGAGGAATTCGAGC  886

seq1  GCAGCAGCGTGCACAGGACAAAACTCTGAAGCTAGAGGGCAATGCCATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCGTGCACAGGACAAAACTCTGAAGCTAGAGGGCAATGCCATGG  936

seq1  AGGTAAGGATTCAGAAGATGCAGTTCTCCACATTTCAATTTCCCCATCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGATTCAGAAGATGCAGTTCTCCACATTTCAATTTCCCCATCAG  986

seq1  CAGCTGGGATCGTAAATGCCTCTCACGAGGCCACTCTGAGAAACAGCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGATCGTAAATGCCTCTCACGAGGCCACTCTGAGAAACAGCCAT  1036

seq1  ATTAAAGGACTATATGAGTTAGTGTGAAACTCGTAAATGTTTAACATAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGACTATATGAGTTAGTGTGAAACTCGTAAATGTTTAACATAGA  1086

seq1  GCAAATGGCTTGTAAGACAGAATTC  1125
      |||||||||||||||||||||||||
seq2  GCAAATGGCTTGTAAGACAGAATTC  1111

seq1: chr2_58147581_58148615
seq2: B6Ng01-139H18.g_68_1093

seq1  GAATTCTACAGCAGGATATTGATGACATAAAAATATGTCATAAATTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGCAGGATATTGATGACATAAAAATATGTCATAAATTAAAA  50

seq1  CAAAGAGATAATACAATGATAGGCTCAATGACTTTCACAATGATATGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATAATACAATGATAGGCTCAATGACTTTCACAATGATATGTCC  100

seq1  TTTCATTTTTATAAGAATTGGTTATTCACTTGTTTAACTCTGAGTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTATAAGAATTGGTTATTCACTTGTTTAACTCTGAGTTTGAA  150

seq1  TATATGTAGAAAAGGCCATATGGAATCTGCATTAAAAAAATAAATATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAGAAAAGGCCATATGGAATCTGCATTAAAAAAATAAATATTCC  200

seq1  GGGAATTAAAAAACAAAACAAAACAACAACAACAACAGCAAACCCTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTAAAAAACAAAACAAAACAACAACAACAACAGCAAACCCTAAAC  250

seq1  CCAAAGAAGCTGCAGTGGACATCTAAGAAGACATCAGGATAGTTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAGCTGCAGTGGACATCTAAGAAGACATCAGGATAGTTTTCTTC  300

seq1  TTCATCTAACACTCTCCTTTTTTAAAGTGGGATTTTTTTTTCTTACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAACACTCTCCTTTTTTAAAGTGGGATTTTTTTTTCTTACAATA  350

seq1  TATTTTGATCATGTTTTCCCCTCCCCCACCTTCTCCCCACTCAACTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATCATGTTTTCCCCTCCCCCACCTTCTCCCCACTCAACTCCAT  400

seq1  GTCCTTCCCCTTCTCTCCTCCCCCCATCGCTATCTCTCTATGCTTGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCCCTTCTCTCCTCCCCCCATCGCTATCTCTCTATGCTTGCAAT  450

seq1  GTGTGTACGTGTGTGGTGTGTGTGTTTCTCTCTCTCTCCCTCCCCCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACGTGTGTGGTGTGTGTGTTTCTCTCTCTCTCCCTCCCCCACTT  500

seq1  CCTCACACACACAGACACAAGAAAAGCAGAAAGTAAAATAGGATGTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACACACAGACACAAGAAAAGCAGAAAGTAAAATAGGATGTAGTA  550

seq1  AAGTGATAAAGAAGAAAATAAAGGCCTTTTGAAAAACTATACAGAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATAAAGAAGAAAATAAAGGCCTTTTGAAAAACTATACAGAACCCT  600

seq1  ACTACTGTAATCCTTCGGGCGATTTCTATCCACGACTTCATTTATTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTAATCCTTCGGGCGATTTCTATCCACGACTTCATTTATTCTGT  650

seq1  CCCGCAGTGAGCACTTTAGTTGATGAGTTCACATGGGACACTTTGATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAGTGAGCACTTTAGTTGATGAGTTCACATGGGACACTTTGATCAA  700

seq1  AACCATTGTTCATTTATTTTTAAACAAGAGTCGGCTTGCTGCAAATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGTTCATTTATTTTTAAACAAGAGTCGGCTTGCTGCAAATATGC  750

seq1  ACGTACCAGAGCCTGAGCCAGAGGCAGTAGCATCGTAGATCAGATCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACCAGAGCCTGAGCCAGAGGCAGTAGCATCGTAGATCAGATCCTTG  800

seq1  AGTGTTTTTCCTGCATTCACAAGGCTGTACTCAGCCAGCGCTTCCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTCCTGCATTCACAAGGCTGTACTCAGCCAGCGCTTCCTCCAC  850

seq1  GTTGTGTCTCTTAGTCTTCCTGTATGTGCACTGGCGGTCCTGGCACGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCTCTTAGTCTTCCTGTATGTGCACTGGCGGTCCTGGCACGCCC  900

seq1  ATATTGTTAGCATGGCGGCTATGGACAGGAGGCAAACCGGCACGGTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTAGCATGGCGGCTATGGACAGGAGGCAAACCGGCACGGTGATA  950

seq1  ACAACCGTCAGCTCTGTGGGACCAAGTCGAGGGGCATTTGGCGATGCTGC  1000
         |||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  --CACCGTCAGCTCTGTGGGACC-AGTCGAGGGGCATTTGGCGATGCTG-  996

seq1  CGTTTAAAAGGAAAGATGGAAGAAACCATAAATCA  1035
      |||||||   | ||||||||  |||||||||||||
seq2  CGTTTAA---GGAAGATGGA--AAACCATAAATCA  1026