BAC Information

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BAC

Clone NameB6Ng01-139J20
Chromosome2 (Build37)
Map Location 105,826,478 - 105,939,244
singlet/doubletdoublet
Overlap geneDph4, LOC668765
Upstream geneCcdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402
Downstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139J20.bB6Ng01-139J20.g
ACCDH938554DH938555
length1,122944
definitionDH938554|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J20, 5' end.DH938555|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,826,478 - 105,827,610)(105,938,302 - 105,939,244)
sequence
gaattcctatattccctttaaaatgagagctgctgtgtgtatagtctgca
tggtctggctgtgaaacccatcttactagaggattgctatgaatagcatt
tggattttcattcggacagactctgacgtgtactaagcttcctcagctcg
cagaatgaggcttcgatgtgaggacatggccacactgacagataaactga
actagttatatacatggctgcaggaccaggctctaggatctctgtctctt
tgaactcctaatcctccagcctctagaaaagccatcttagcatcatggat
gttttaaaagacactacttgatctacctgacagattgtaaaacttctgca
acacataagtacaacattaatggtctctgagaccaaattagagttgtttt
tgttttgttttgtttttgtttttgtttttgtttttgaggttagttacctc
taacaaagagaagaggaagatttttaaaaagagaaaaggaggaagttggt
ccagggcaagctgggaaagcaggcagaggaaggggaagagaatgtggctt
ttaaagaaaggattacaggggagaagcagagccagggagctgaggatttt
gcacatcaagaagaaagagggaagaggctgaagaaaacaaagcttgttat
tttcggtgtggatgtttttcaaaggaagaagcactaggaggtgggtttgg
agaaagtagattcctggtgatgagaaactaggaagtagaaggctgacctc
tcagtacactatgaacagggacatttaaaactttacagtaaacactgacc
cccagccccctccaaggatcatcactaggccactgcaggctctccctgtt
ctttaggttctttttgttgttgtttttggcataattaagaatgtgaacac
tgaccctaagctaaagtccccatgcaaagtctagagtggcatacacagac
agcactctcccatgctgctctgatggagcacctgaagctctgggggccac
caaagccacatgtactaataggtggtggctctgtcaaagggcctctgctt
tcctccagtaactgatcatcctgccattatggattgcacacactgcttgg
aatccccaagtgcctcaccctg
gaattctggttctctgcaagagacatatgctacattacccactgagcttt
ctctccaatgcccataaatgttttaatttaaatttaaaccctcaatatgg
gagatgtatatatccttacatatgtaagttttaatcatcgtaagttaagt
ataattttaaaactaagaaggtattttttaagtgaccaaggattatcaaa
ctgaaatttaactgtgtgtaaagggatgctggaaaatataaaataaatgg
caaacagagaaaaatatactaccattctataccaagggtaatttaagcac
atataaaccatggagaatgtttacaatgggcaagctgtgcagaaaacaca
cactgccaataaacacagataaatatatttcacagactaagtctttctaa
ttgttcctttaaaacagacacaaacaaacaaatgaagcgaagggtgcagg
gcatggcgcactgactcgtctctggatggagtgcgcacaggagcgcgcac
aggcacagacttactgggctattgaatggctagggagaggtgaaatgtaa
aagctacttgttctaatcattttaacttgagaagttcatactcaccatta
ccggcagaagtgtgaaaatattatgcgttagactactgactgcaacagtg
cttcccattaaaatggagatgggtgatgccctgtgtgtccactagtgatt
atacagagccaagatgtgaccaacctgcactcaatgaacagagacccttc
tgatgccacggaatcccaggaagaagactcgacctctcttcctctcttcc
tctcttcctctcttctctcttcctctcttcctctctcccctcttccatta
tccatctcagaagcactggacagagacatgcttcactggtgagatgtgta
ccatctatgaattataatttatatagtctctctctcctcctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105826478_105827610
seq2: B6Ng01-139J20.b_48_1169

seq1  GAATTCCTATATTCCCTTTAAAATGAGAGCTGCTGTGTGTATAGTCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATATTCCCTTTAAAATGAGAGCTGCTGTGTGTATAGTCTGCA  50

seq1  TGGTCTGGCTGTGAAACCCATCTTACTAGAGGATTGCTATGAATAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGCTGTGAAACCCATCTTACTAGAGGATTGCTATGAATAGCATT  100

seq1  TGGATTTTCATTCGGACAGACTCTGACGTGTACTAAGCTTCCTCAGCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTCATTCGGACAGACTCTGACGTGTACTAAGCTTCCTCAGCTCG  150

seq1  CAGAATGAGGCTTCGATGTGAGGACATGGCCACACTGACAGATAAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGGCTTCGATGTGAGGACATGGCCACACTGACAGATAAACTGA  200

seq1  ACTAGTTATATACATGGCTGCAGGACCAGGCTCTAGGATCTCTGTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTATATACATGGCTGCAGGACCAGGCTCTAGGATCTCTGTCTCTT  250

seq1  TGAACTCCTAATCCTCCAGCCTCTAGAAAAGCCATCTTAGCATCATGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCTAATCCTCCAGCCTCTAGAAAAGCCATCTTAGCATCATGGAT  300

seq1  GTTTTAAAAGACACTACTTGATCTACCTGACAGATTGTAAAACTTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAGACACTACTTGATCTACCTGACAGATTGTAAAACTTCTGCA  350

seq1  ACACATAAGTACAACATTAATGGTCTCTGAGACCAAATTAGAGTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAGTACAACATTAATGGTCTCTGAGACCAAATTAGAGTTGTTTT  400

seq1  TGTTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTTGAGGTTAGTTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTTGAGGTTAGTTACCTC  450

seq1  TAACAAAGAGAAGAGGAAGATTTTTAAAAAGAGAAAAGGAGGAAGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGAGAAGAGGAAGATTTTTAAAAAGAGAAAAGGAGGAAGTTGGT  500

seq1  CCAGGGCAAGCTGGGAAAGCAGGCAGAGGAAGGGGAAGAGAATGTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAAGCTGGGAAAGCAGGCAGAGGAAGGGGAAGAGAATGTGGCTT  550

seq1  TTAAAGAAAGGATTACAGGGGAGAAGCAGAGCCAGGGAGCTGAGGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAGGATTACAGGGGAGAAGCAGAGCCAGGGAGCTGAGGATTTT  600

seq1  GCACATCAAGAAGAAAGAGGGAAGAGGCTGAAGAAAACAAAGCTTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCAAGAAGAAAGAGGGAAGAGGCTGAAGAAAACAAAGCTTGTTAT  650

seq1  TTTCGGTGTGGATGTTTTTCAAAGGAAGAAGCACTAGGAGGTGGGTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGTGTGGATGTTTTTCAAAGGAAGAAGCACTAGGAGGTGGGTTTGG  700

seq1  AGAAAGTAGATTCCTGGTGATGAGAAACTAGGAAGTAGAAGGCTGACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAGATTCCTGGTGATGAGAAACTAGGAAGTAGAAGGCTGACCTC  750

seq1  TCAGTACACTATGAACAGGGACATTTAAAACTTTACAGTAAACACTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACACTATGAACAGGGACATTTAAAACTTTACAGTAAACACTGACC  800

seq1  CCCAGCCCCCTCCAAGGATCATCACTAGGCCACTGCAGGCTCTCCCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCCTCCAAGGATCATCACTAGGCCACTGCAGGCTCTCCCTGTT  850

seq1  CTTTAGGTTCTTTTTGTTGTTGTTTTTGGCATAATTAAGAATGTGAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTTCTTTTTGTTGTTGTTTTTGGCATAATTAAGAATGTGAACAC  900

seq1  TGACCCTAAGCTAAAGTCCCCATGCAAAGTCTAGAGTGGCAATACACAGA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACCCTAAGCTAAAGTCCCCATGCAAAGTCTAGAGTGGC-ATACACAGA  949

seq1  CAGCAACCCTC-CCCATGCTGCTCTGATGGAGCAACCTGAAGCTCTGGGG  999
      |||||   ||| ||||||||||||||||||||| ||||||||||||||||
seq2  CAGCA---CTCTCCCATGCTGCTCTGATGGAGC-ACCTGAAGCTCTGGGG  995

seq1  GCCACCAAGGCCACATGGTACTAATTAGTGTGTGCTCTGTCAAAGGGCTC  1049
      |||||||| ||||||| ||||||||  |||   |||||||||||||||  
seq2  GCCACCAAAGCCACAT-GTACTAATAGGTGGTGGCTCTGTCAAAGGGCCT  1044

seq1  CTGCTCTTCCTCCAGTAACTGATCATCCTGCCATATTAATGAAATGCACA  1099
      ||||| |||||||||||||||||||||||||||   | ||| | ||||||
seq2  CTGCT-TTCCTCCAGTAACTGATCATCCTGCCA---TTATGGATTGCACA  1090

seq1  CACTGGCTTGAATTCCCCCAAGTGCCTCACCCTG  1133
      |||||  | ||||  |||||||||||||||||||
seq2  CACTGCTTGGAAT--CCCCAAGTGCCTCACCCTG  1122

seq1: chr2_105938302_105939244
seq2: B6Ng01-139J20.g_68_1011 (reverse)

seq1  GGGAG--GGAGAGAGAGACTATATAAATTATAAATTCATAGATGTTACAC  48
      |||||  |||||||||||||||||||||||| |||||||||||| |||||
seq2  GGGAGGAGGAGAGAGAGACTATATAAATTAT-AATTCATAGATGGTACAC  49

seq1  ATCTCACCAGTG-AGCATGTCTCTGTCCAGTGCTTCTGAGATGGATAATG  97
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCAGTGAAGCATGTCTCTGTCCAGTGCTTCTGAGATGGATAATG  99

seq1  GAAGAGGGGAGAGAGGAAGAGAGGAAGAGAGGAAGAGAGGAAGAGAGGAA  147
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAGAGGGGAGAGAGGAAGAGAGGAAGAGA-GAAGAGAGGAAGAGAGGAA  148

seq1  GAGAGGAAGAGAGGTCGAGTCTTCTTCCTGGGATTCCGTGGCATCAGAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGAGAGGTCGAGTCTTCTTCCTGGGATTCCGTGGCATCAGAAG  198

seq1  GGTCTCTGTTCATTGAGTGCAGGTTGGTCACATCTTGGCTCTGTATAATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTTCATTGAGTGCAGGTTGGTCACATCTTGGCTCTGTATAATC  248

seq1  ACTAGTGGACACACAGGGCATCACCCATCTCCATTTTAATGGGAAGCACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGACACACAGGGCATCACCCATCTCCATTTTAATGGGAAGCACT  298

seq1  GTTGCAGTCAGTAGTCTAACGCATAATATTTTCACACTTCTGCCGGTAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTCAGTAGTCTAACGCATAATATTTTCACACTTCTGCCGGTAAT  348

seq1  GGTGAGTATGAACTTCTCAAGTTAAAATGATTAGAACAAGTAGCTTTTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTATGAACTTCTCAAGTTAAAATGATTAGAACAAGTAGCTTTTAC  398

seq1  ATTTCACCTCTCCCTAGCCATTCAATAGCCCAGTAAGTCTGTGCCTGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCTCTCCCTAGCCATTCAATAGCCCAGTAAGTCTGTGCCTGTGC  448

seq1  GCGCTCCTGTGCGCACTCCATCCAGAGACGAGTCAGTGCGCCATGCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCCTGTGCGCACTCCATCCAGAGACGAGTCAGTGCGCCATGCCCTG  498

seq1  CACCCTTCGCTTCATTTGTTTGTTTGTGTCTGTTTTAAAGGAACAATTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCGCTTCATTTGTTTGTTTGTGTCTGTTTTAAAGGAACAATTAG  548

seq1  AAAGACTTAGTCTGTGAAATATATTTATCTGTGTTTATTGGCAGTGTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTAGTCTGTGAAATATATTTATCTGTGTTTATTGGCAGTGTGTG  598

seq1  TTTTCTGCACAGCTTGCCCATTGTAAACATTCTCCATGGTTTATATGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCACAGCTTGCCCATTGTAAACATTCTCCATGGTTTATATGTGC  648

seq1  TTAAATTACCCTTGGTATAGAATGGTAGTATATTTTTCTCTGTTTGCCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACCCTTGGTATAGAATGGTAGTATATTTTTCTCTGTTTGCCAT  698

seq1  TTATTTTATATTTTCCAGCATCCCTTTACACACAGTTAAATTTCAGTTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATATTTTCCAGCATCCCTTTACACACAGTTAAATTTCAGTTTG  748

seq1  ATAATCCTTGGTCACTTAAAAAATACCTTCTTAGTTTTAAAATTATACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTGGTCACTTAAAAAATACCTTCTTAGTTTTAAAATTATACTT  798

seq1  AACTTACGATGATTAAAACTTACATATGTAAGGATATATACATCTCCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACGATGATTAAAACTTACATATGTAAGGATATATACATCTCCCAT  848

seq1  ATTGAGGGTTTAAATTTAAATTAAAACATTTATGGGCATTGGAGAGAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGTTTAAATTTAAATTAAAACATTTATGGGCATTGGAGAGAAAG  898

seq1  CTCAGTGGGTAATGTAGCATATGTCTCTTGCAGAGAACCAGAATTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTAATGTAGCATATGTCTCTTGCAGAGAACCAGAATTC  944