BAC Information

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BAC

Clone NameB6Ng01-140D05
Chromosome2 (Build37)
Map Location 32,361,078 - 32,524,465
singlet/doubletdoublet
Overlap geneC230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng
Upstream geneAss1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik
Downstream geneFpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D05.bB6Ng01-140D05.g
ACCDH938995DH938996
length1,0781,091
definitionDH938995|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D05, 5' end.DH938996|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,523,379 - 32,524,465)(32,361,078 - 32,362,183)
sequence
gaattcaattcccagcaaccacgtgatggctcacaaccatctgtatggga
tccagtgccctcttcaggtgtgtctgaagagagggacagtgtactcatat
acataaaataaataaataattttttttaaaaaaggaaagaaggcatgcat
gcatgcatgaatgaatgagcttggtcccaaccaagcaaaaaagaggacaa
actaagtcagatctgtgcttcacgtaacattcaggattgcgagattcatt
tttcctttcctttcctttccttttccacttccttctcctcataggttctt
gctttgtgcccaggctggcctcgaactcttgactcttcctacctagttca
gtgctggaatgtcaggcacatgccagcacatccagtcaggatgatttcca
ctgagtgtctgctgtaacctgggcctgtaaatgtctgaaggttaagctat
gcatggaagcagcgagccttctctcactgtcctctccccttttctagttg
tctctgggaggccactctgatgccagctcactccaaccattcacaattgt
tcctagagctggcatggcggctcagtggcagatcacacgcgcatgacctg
gttccacccacatttacctatgagctccatggaaacaacctaagaagtgg
gtactggtaaaacgttcacaaattaggaaaccgagtcacagaagtgaggt
tgcttgccccatgatcacacggaaggctggcaatgtccagctctgtcaag
aagactaagaagaaaagaaaagatggccagatcaaagctattccgagagc
tttctgggcccatgagatggtgagggagggggaatgagcaggagacaaag
gcgcctggcccagatcgtgcctcaaaaccttgtggtgtctcagagaacaa
agacagtggaaatcctcccagcacgtctctggcagttcctgccgcagcat
gaagttccaatacggatgcaagcaagctctgtctctgtcagaaagtaaag
ctatgggcttagcaagagacatcagtgaaagtttaagggtcgggcttcta
atcgatctcatgttgttatcctgactga
gaattccaggacagccagggctatacagagaaacactgtctcagaaaaaa
aaaacaaaaaacaaaaaaccaagaacaaaaacaaaacaaaacaaaacaac
aaaaatgggtattaccacctatacatgtgtatgcatcacatacatgtaat
accctcagaggccagaagagggcatccagtctcctaggactgaagttatg
gacaattgtgagctgccatgtgggtgcttggaatctaacacaggtccctc
gggagcagccagtgctcttgaccgctgagccatctctccatcccccatgt
actgtttcttaatacaggacaaccttactatacacattgtgcctcactgc
tactgctgtggcccccaggtcttgcctctagcatctacattccgcaatag
gtgcttgggataggatcaagatgggatttatcgcaataggataaatcagg
aaccgcatcatatggccagtcttggccaatgggaccttagtagacatgcc
ataaacacaggcacatatatacaaatatatgtttgtgtgtatgtgtatag
agatagagatagagacagaatttgtttttaggcaagatcttgtctatcct
ggaaattgctatgtagaccaggttggcctccaactcagacctttgccttc
ctctgcctccctaaggctgggattaaaggcgtgctcatacccagaggtct
tctgacctccatattcatagcctggcccatgttcacccctcacacatgca
tacacacagagaaacacacatatactgtccacatacatagaaatacatat
ttttaatctataatatagacacataaatgtatttgtgtatgtatttttta
atacagactaggggctgggaagatggctcagtcagtaaagagtaccacac
aagcatggaggccttgagttcaaatccctagaacccaggaaaagtagagc
tatgatttcagtcttggagaggacaggagttagaggtggccacgttgcca
gtcagccagcagagttcatgagcttcaggtcaatgagaaaccctatctcc
aaaataatgcacgtaagacagagttcacctctgacctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32523379_32524465
seq2: B6Ng01-140D05.b_49_1126 (reverse)

seq1  TCAGTCAGGGAAACAACAGTGAG-TCGATTAGAAGCCAGACCCTAAAACT  49
      |||||||||  ||||||| |||| ||||||||||||| |||||| |||||
seq2  TCAGTCAGGATAACAACA-TGAGATCGATTAGAAGCCCGACCCTTAAACT  49

seq1  TTCCACTGATGTCTCTGTGCTAAGCCCAT-GCTCTGCTTTCTGACAGAGG  98
      || ||||||||||||| |||||||||||| ||| | |||||||||||| |
seq2  TT-CACTGATGTCTCT-TGCTAAGCCCATAGCTTTACTTTCTGACAGA-G  96

seq1  ACAGAGCTTGCTTGCAGTCCGCTATCGG-ACTTCATGCTGCTGGCAGGAA  147
      |||||||||||||||| |||| ||| || |||||||||||| ||||||||
seq2  ACAGAGCTTGCTTGCA-TCCG-TATTGGAACTTCATGCTGC-GGCAGGAA  143

seq1  CTGCCAGAGACCGTGTCTGGGAGGATTTCCACTTGTCTTTGTTCTCTGAG  197
      |||||||||| |||| |||||||||||||||| |||||||||||||||||
seq2  CTGCCAGAGA-CGTG-CTGGGAGGATTTCCAC-TGTCTTTGTTCTCTGAG  190

seq1  ACACCACAAGGTTTCTGAGGCACCGATCTGGGCCAGGCGCCTTTGTCTCC  247
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  ACACCACAAGGTTT-TGAGGCA-CGATCTGGGCCAGGCGCCTTTGTCTCC  238

seq1  TGCTCATTCCCCCTCCCTCACCATCTCATGGGCCCAGAAAGCTCTCGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCCCCCTCCCTCACCATCTCATGGGCCCAGAAAGCTCTCGGAA  288

seq1  TAGCTTTGATCTGGCCATCTTTTCTTTTCTTCTTAGTCTTCTTGACAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGATCTGGCCATCTTTTCTTTTCTTCTTAGTCTTCTTGACAGAG  338

seq1  CTGGACATTGCCAGCCTTCCGTGTGATCATGGGGCAAGCAACCTCACTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATTGCCAGCCTTCCGTGTGATCATGGGGCAAGCAACCTCACTTC  388

seq1  TGTGACTCGGTTTCCTAATTTGTGAACGTTTTACCAGTACCCACTTCTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCGGTTTCCTAATTTGTGAACGTTTTACCAGTACCCACTTCTTA  438

seq1  GGTTGTTTCCATGGAGCTCATAGGTAAATGTGGGTGGAACCAGGTCATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTCCATGGAGCTCATAGGTAAATGTGGGTGGAACCAGGTCATGC  488

seq1  GCGTGTGATCTGCCACTGAGCCGCCATGCCAGCTCTAGGAACAATTGTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGATCTGCCACTGAGCCGCCATGCCAGCTCTAGGAACAATTGTGA  538

seq1  ATGGTTGGAGTGAGCTGGCATCAGAGTGGCCTCCCAGAGACAACTAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGAGTGAGCTGGCATCAGAGTGGCCTCCCAGAGACAACTAGAAA  588

seq1  AGGGGAGAGGACAGTGAGAGAAGGCTCGCTGCTTCCATGCATAGCTTAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAGGACAGTGAGAGAAGGCTCGCTGCTTCCATGCATAGCTTAAC  638

seq1  CTTCAGACATTTACAGGCCCAGGTTACAGCAGACACTCAGTGGAAATCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACATTTACAGGCCCAGGTTACAGCAGACACTCAGTGGAAATCAT  688

seq1  CCTGACTGGATGTGCTGGCATGTGCCTGACATTCCAGCACTGAACTAGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGGATGTGCTGGCATGTGCCTGACATTCCAGCACTGAACTAGGT  738

seq1  AGGAAGAGTCAAGAGTTCGAGGCCAGCCTGGGCACAAAGCAAGAACCTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGTCAAGAGTTCGAGGCCAGCCTGGGCACAAAGCAAGAACCTAT  788

seq1  GAGGAGAAGGAAGTGGAAAAGGAAAGGAAAGGAAAGGAAAAATGAATCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGGAAGTGGAAAAGGAAAGGAAAGGAAAGGAAAAATGAATCTC  838

seq1  GCAATCCTGAATGTTACGTGAAGCACAGATCTGACTTAGTTTGTCCTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTGAATGTTACGTGAAGCACAGATCTGACTTAGTTTGTCCTCTT  888

seq1  TTTTGCTTGGTTGGGACCAAGCTCATTCATTCATGCATGCATGCATGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGGTTGGGACCAAGCTCATTCATTCATGCATGCATGCATGCCT  938

seq1  TCTTTCCTTTTTTAAAAAAAATTATTTATTTATTTTATGTATATGAGTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTTTTAAAAAAAATTATTTATTTATTTTATGTATATGAGTAC  988

seq1  ACTGTCCCTCTCTTCAGACACACCTGAAGAGGGCACTGGATCCCATACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTCTCTTCAGACACACCTGAAGAGGGCACTGGATCCCATACAG  1038

seq1  ATGGTTGTGAGCCATCACGTGGTTGCTGGGAATTGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCATCACGTGGTTGCTGGGAATTGAATTC  1078

seq1: chr2_32361078_32362183
seq2: B6Ng01-140D05.g_68_1158

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACACTGTCTCAGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACACTGTCTCAGAAAAAA  50

seq1  AAAACAAAAAACAAAAAACCAAGAACAAAAACAAAACAAAACAAAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAACAAAAAACCAAGAACAAAAACAAAACAAAACAAAACAAC  100

seq1  AAAAATGGGTATTACCACCTATACATGTGTATGCATCACATACATGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGTATTACCACCTATACATGTGTATGCATCACATACATGTAAT  150

seq1  ACCCTCAGAGGCCAGAAGAGGGCATCCAGTCTCCTAGGACTGAAGTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGAGGCCAGAAGAGGGCATCCAGTCTCCTAGGACTGAAGTTATG  200

seq1  GACAATTGTGAGCTGCCATGTGGGTGCTTGGAATCTAACACAGGTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGTGAGCTGCCATGTGGGTGCTTGGAATCTAACACAGGTCCCTC  250

seq1  GGGAGCAGCCAGTGCTCTTGACCGCTGAGCCATCTCTCCATCCCCCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGCCAGTGCTCTTGACCGCTGAGCCATCTCTCCATCCCCCATGT  300

seq1  ACTGTTTCTTAATACAGGACAACCTTACTATACACATTGTGCCTCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTTAATACAGGACAACCTTACTATACACATTGTGCCTCACTGC  350

seq1  TACTGCTGTGGCCCCCAGGTCTTGCCTCTAGCATCTACATTCCGCAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGGCCCCCAGGTCTTGCCTCTAGCATCTACATTCCGCAATAG  400

seq1  GTGCTTGGGATAGGATCAAGATGGGATTTATCGCAATAGGATAAATCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGGATAGGATCAAGATGGGATTTATCGCAATAGGATAAATCAGG  450

seq1  AACCGCATCATATGGCCAGTCTTGGCCAATGGGACCTTAGTAGACATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCATCATATGGCCAGTCTTGGCCAATGGGACCTTAGTAGACATGCC  500

seq1  ATAAACACAGGCACATATATACAAATATATGTTTGTGTGTATGTGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGGCACATATATACAAATATATGTTTGTGTGTATGTGTATAG  550

seq1  AGATAGAGATAGAGACAGAATTTGTTTTTAGGCAAGATCTTGTCTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGATAGAGACAGAATTTGTTTTTAGGCAAGATCTTGTCTATCCT  600

seq1  GGAAATTGCTATGTAGACCAGGTTGGCCTCCAACTCAGACCTTTGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGCTATGTAGACCAGGTTGGCCTCCAACTCAGACCTTTGCCTTC  650

seq1  CTCTGCCTCCCTAAGGCTGGGATTAAAGGCGTGCTCATACCCAGAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCTAAGGCTGGGATTAAAGGCGTGCTCATACCCAGAGGTCT  700

seq1  TCTGACCTCCATATTCATAGCCTGGCCCATGTTCACCCCTCACACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCCATATTCATAGCCTGGCCCATGTTCACCCCTCACACATGCA  750

seq1  TACACACAGAGAAACACACATATACTGTCCACATACATAGAAATACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGAGAAACACACATATACTGTCCACATACATAGAAATACATAT  800

seq1  TTTTAATCTATAATATAGACACATAAATGTATTTGTGTATGTATTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTATAATATAGACACATAAATGTATTTGTGTATGTATTTTTTA  850

seq1  ATACAGACTAGGGGCTGGGAAGATGGCTCAGTCAGTAAAGAGTTACCACA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACAGACTAGGGGCTGGGAAGATGGCTCAGTCAGTAAAGAG-TACCACA  899

seq1  CAAGCAT-GAGGACCTGAGTTCAAATCCCTAGAACCCAGGAAAAAGTTAG  949
      ||||||| |||| | |||||||||||||||||||||||||||||   |||
seq2  CAAGCATGGAGGCCTTGAGTTCAAATCCCTAGAACCCAGGAAAA--GTAG  947

seq1  AGCCTATGATTCCAGTCTTGGAGGAGGACAAGGAGGTCAGAGGTGGCCAC  999
      || |||||||| |||||||||| |||||| |||| || ||||||||||||
seq2  AG-CTATGATTTCAGTCTTGGA-GAGGAC-AGGA-GTTAGAGGTGGCCAC  993

seq1  GTTGGCCAGTCAGCCAAGCAGAGTCCATGAGCTTCAGGTTCAATGAGAAA  1049
      ||| ||||||||||| |||||||| ||||||||||||| |||||||||||
seq2  GTT-GCCAGTCAGCC-AGCAGAGTTCATGAGCTTCAGG-TCAATGAGAAA  1040

seq1  CCCTATCTCACAAAATAATGACAACAGTAAGACCAGAAGTTCACCTCTGA  1099
      ||||||||| |||||||||| ||   |||||| ||| |||||||||||||
seq2  CCCTATCTC-CAAAATAATG-CA--CGTAAGA-CAG-AGTTCACCTCTGA  1084

seq1  CCTCTAC  1106
      |||||||
seq2  CCTCTAC  1091