BAC Information

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BAC

Clone NameB6Ng01-140G11
Chromosome2 (Build37)
Map Location 78,428,415 - 78,569,758
singlet/doubletdoublet
Overlap geneLOC100040476
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G11.bB6Ng01-140G11.g
ACCDH939143DH939144
length1,0691,059
definitionDH939143|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G11, 5' end.DH939144|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,428,415 - 78,429,494)(78,568,679 - 78,569,758)
sequence
gaattcttggatccttttcatcaaatccctccaagaccatccgtatgcca
acacaatctataacattatctccaaagcgagaagctaagaggaaagaaac
tgcccatgatcacatagtttggtagatgtgtggtaggagaagtatctctt
gaaggcaaatttcccaattcccagtttagtgatcaaaaattaggtacatt
ggttaagctaaagtagaagtgaaggcaacagcagcatgtagttaattata
agtcttaaagcacaaaagcatgcaatatattttaatacagaacagaaatg
ttagcatgctttcttctttcctttcaaagtccttctcagaaaacacaaat
tttcttagccacatttccatcaggcaattacatcctgcccataaagattc
tttctgtctcaattggacagagcacatgccatctaatttgtcttgtttcc
ctaattgattctgcagtaattccatgcgagcttagcatttcacagcttct
gttctcttctccagggtgtccttagaggaccattgagtaaattacttttt
ttctagtgtgcttaatggtgccctagtgttcagaaagagttaattcacct
ctgagaggtgagcagttcttcacccaagaaccaggactattactgaccca
aagagggctgtagcaatctgggcatatggccaattagccacacactggca
cagaagacattcagtaggtgcccatgccccattgaaagtgactcaaccat
gggaaacctgtgatgtgtccaaatgtatcacagatcttcttagaaaaata
agatacatttacctaagatcacctgtttagtttgatacatgacttctagg
gtatcctgtgtttgttcatagatagttctagaaatgactcagtctataag
ttaattcttcaatgtccccacccaatagaaatatatccctcaaaggcata
tctcagcacttctgactgaagagcataatccctgtttgaaaacagaaaaa
atacttttatcatgtattctaattaattactttaaatattatcattggaa
cgcaataaaattaagatat
gaattccaaacagcatcatgtgccggtaaccacgtgttgaaacaaattag
cgtatcagggacattttgcttttgagtaacaatggcattgtacacagcag
atctgggacatttgatggttcctcaagttatctttactttggagccgttt
gttctgatgattttaaatatcctactgactagcattaacacagggttttt
aatttatataacttaaatatgatgagaaacttatcattttattttatgat
gtgtactttacagcttttcaattttcaagtgatgaagtttgcctggatgg
acttattcaagaaaatatagcaagatttctgcttgggcttcagatgtatc
aaataaatagttgtcatttctttaaaattaaaaaaaaaactattttatat
tataatataattacattgtttcctccaaatcttacaatgtacctccacta
ctacccaccccactcctctctctttcaaattcatagccccttttctttaa
ttggtgtgtgtgtgtgtgtctgtgcctgtgtgtctgtgtgcctgtgtgtc
tgtgtgcctgtgtgcctgtgtgcctgtgtgtctgtgtgtgttcctaaata
cataaatacaaccacctgctcagtccctataatcttacttgtgtgttttt
cacagctgaccatttgggattggagcatcagatgatgtgttcttttgctg
ggaaagactatttctactgctctttagcattccttagttgtctgtagttc
ttttgtgtagttttggggcctcagaacttttctctatccaggtttctaaa
tctgctgacatcatcccctttcaggtcaggtcaggcagccatgttgggga
gagctcatgggtggtttttacatttattgagatgacttagtgacgatcat
tcttaacataaatattctaaagttcttatgcagtatgacttttctgtcat
ctgagtatcatgacttagatgctattctaaaaatagtctattcaggtttc
aataatttgcctatatctagcttgcatagctataacaatatcttcaatta
ttaggcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78428415_78429494
seq2: B6Ng01-140G11.b_44_1112

seq1  GAATTCTTGGATCCTTTTCATCAAATCCCTCCAAGACCATCCGTATGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATCCTTTTCATCAAATCCCTCCAAGACCATCCGTATGCCA  50

seq1  ACACAATCTATAACATTATCTCCAAAGCGAGAAGCTAAGAGGAAAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCTATAACATTATCTCCAAAGCGAGAAGCTAAGAGGAAAGAAAC  100

seq1  TGCCCATGATCACATAGTTTGGTAGATGTGTGGTAGGAGAAGTATCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGATCACATAGTTTGGTAGATGTGTGGTAGGAGAAGTATCTCTT  150

seq1  GAAGGCAAATTTCCCAATTCCCAGTTTAGTGATCAAAAATTAGGTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAATTTCCCAATTCCCAGTTTAGTGATCAAAAATTAGGTACATT  200

seq1  GGTTAAGCTAAAGTAGAAGTGAAGGCAACAGCAGCATGTAGTTAATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGCTAAAGTAGAAGTGAAGGCAACAGCAGCATGTAGTTAATTATA  250

seq1  AGTCTTAAAGCACAAAAGCATGCAATATATTTTAATACAGAACAGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAAAGCACAAAAGCATGCAATATATTTTAATACAGAACAGAAATG  300

seq1  TTAGCATGCTTTCTTCTTTCCTTTCAAAGTCCTTCTCAGAAAACACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGCTTTCTTCTTTCCTTTCAAAGTCCTTCTCAGAAAACACAAAT  350

seq1  TTTCTTAGCCACATTTCCATCAGGCAATTACATCCTGCCCATAAAGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCCACATTTCCATCAGGCAATTACATCCTGCCCATAAAGATTC  400

seq1  TTTCTGTCTCAATTGGACAGAGCACATGCCATCTAATTTGTCTTGTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCAATTGGACAGAGCACATGCCATCTAATTTGTCTTGTTTCC  450

seq1  CTAATTGATTCTGCAGTAATTCCATGCGAGCTTAGCATTTCACAGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGATTCTGCAGTAATTCCATGCGAGCTTAGCATTTCACAGCTTCT  500

seq1  GTTCTCTTCTCCAGGGTGTCCTTAGAGGACCATTGAGTAAATTACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTCTCCAGGGTGTCCTTAGAGGACCATTGAGTAAATTACTTTTT  550

seq1  TTCTAGTGTGCTTAATGGTGCCCTAGTGTTCAGAAAGAGTTAATTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTGCTTAATGGTGCCCTAGTGTTCAGAAAGAGTTAATTCACCT  600

seq1  CTGAGAGGTGAGCAGTTCTTCACCCAAGAACCAGGACTATTACTGACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGTGAGCAGTTCTTCACCCAAGAACCAGGACTATTACTGACCCA  650

seq1  AAGAGGGCTGTAGCAATCTGGGCATATGGCCAATTAGCCACACACTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCTGTAGCAATCTGGGCATATGGCCAATTAGCCACACACTGGCA  700

seq1  CAGAAGACATTCAGTAGGTGCCCATGCCCCATTGAAAGTGACTCAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACATTCAGTAGGTGCCCATGCCCCATTGAAAGTGACTCAACCAT  750

seq1  GGGAAACCTGTGATGTGTCCAAATGTATCACAGATCTTCTTAGAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCTGTGATGTGTCCAAATGTATCACAGATCTTCTTAGAAAAATA  800

seq1  AGATACATTTACCTAAGATCACCTGTTTAGTTTGATACATGACTTCTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATTTACCTAAGATCACCTGTTTAGTTTGATACATGACTTCTAGG  850

seq1  GTATCCTGTGTTTGTTCATAGATAGTTCTAGAAATGACTCAGTCTATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGTGTTTGTTCATAGATAGTTCTAGAAATGACTCAGTCTATAAG  900

seq1  TTAATTCTTCAATGTCCCCACCCAAATAGGAAATTATATCCCTCAAAGGC  950
      ||||||||||||||||||||||| |||||  || ||||||||||||||||
seq2  TTAATTCTTCAATGTCCCCACCC-AATAG--AAATATATCCCTCAAAGGC  947

seq1  ATACCTCAGCACTTCTGACTGAAGAGCATAATCCCTGTTTGAAAACAGAT  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATATCTCAGCACTTCTGACTGAAGAGCATAATCCCTGTTTGAAAACAG--  995

seq1  AAAAATTACTTTTAATCATGTATTCTATATAATTCACATTAAATTATTAT  1050
      ||||| ||||||| |||||||||||||  ||||| || ||||| ||||||
seq2  AAAAAATACTTTT-ATCATGTATTCTAATTAATT-ACTTTAAA-TATTAT  1042

seq1  CATTTGGAACCATAATAAATATTAAGATAT  1080
      || |||||| |  |||||| ||||||||||
seq2  CA-TTGGAA-CGCAATAAA-ATTAAGATAT  1069

seq1: chr2_78568679_78569758
seq2: B6Ng01-140G11.g_67_1125 (reverse)

seq1  ACTGCCTTAAATAATTTGAAGATAATTGTATAGCTTTAATGGCCAAGCTA  50
      |||||||  ||||| ||||||||| |  |||||||   |||  |||||||
seq2  ACTGCCT--AATAA-TTGAAGATATTGTTATAGCT---ATG--CAAGCTA  42

seq1  GATATAGGGCAAATATATGAAAACCTGGAATAGACTAATTTTTTAAGAAT  100
      |||||| ||||||| |||  |||||| ||||||||||   |||| |||||
seq2  GATATA-GGCAAAT-TATTGAAACCT-GAATAGACTA---TTTTTAGAAT  86

seq1  AGCATACTAAAGTCATGATACTCAGATTGACAGAAAAGTTCAATACTGCA  150
      ||||| || ||||||||||||||||| ||||||||||||   ||||||||
seq2  AGCAT-CT-AAGTCATGATACTCAGA-TGACAGAAAAGT--CATACTGCA  131

seq1  TAAGAACTTTTAGAATAATTTATTGTTTAAAGAATTGATCGTCACTAGGT  200
      ||||||| |||||||| ||||| ||||  ||||| |||||||||||| ||
seq2  TAAGAAC-TTTAGAAT-ATTTA-TGTT--AAGAA-TGATCGTCACTAAGT  175

seq1  CATCTCAATAAATGTAAAAA-CACCCATGAGCTCTCCCCAACATGGCTGC  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATCTCAATAAATGTAAAAACCACCCATGAGCTCTCCCCAACATGGCTGC  225

seq1  CTGAACCTGACCTGAAAGGGGATGATGTCAGCAGATTTAGAAACCTGGAT  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-ACCTGACCTGAAAGGGGATGATGTCAGCAGATTTAGAAACCTGGAT  274

seq1  AGGGAAAGTTTCTGGGGCCCCAAAACTACAC-AAAGAACTACAGACAACT  348
      || ||||  ||||| |||||||||||||||| ||||||||||||||||||
seq2  AGAGAAAAGTTCTGAGGCCCCAAAACTACACAAAAGAACTACAGACAACT  324

seq1  AAGGAATGCT-AAGAGCAGTAGAAATAGTCTTTCCCAGC-AAAGAACACA  396
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  AAGGAATGCTAAAGAGCAGTAGAAATAGTCTTTCCCAGCAAAAGAACACA  374

seq1  TCATCTGATGCTCCAATCCCAAATGGTCAGCTGTG-AAAACACACAAGTA  445
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCATCTGATGCTCCAATCCCAAATGGTCAGCTGTGAAAAACACACAAGTA  424

seq1  AGATTATAGGGACTGAGCAGGTGGTTGTATTTATGTATTTAGGAACACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAGGGACTGAGCAGGTGGTTGTATTTATGTATTTAGGAACACAC  474

seq1  ACAGACACACAGGCACACAGGCACACAGGCACACAGACACACAGGCACAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACACAGGCACACAGGCACACAGGCACACAGACACACAGGCACAC  524

seq1  AGACACACAGGCACAGACACACACACACACACCAATTAAAGAAAAGGGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAGGCACAGACACACACACACACACCAATTAAAGAAAAGGGGC  574

seq1  TATGAATTTGAAAGAGAGAGGAGTGGGGTGGGTAGTAGTGGAGGTACATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTGAAAGAGAGAGGAGTGGGGTGGGTAGTAGTGGAGGTACATT  624

seq1  GTAAGATTTGGAGGAAACAATGTAATTATATTATAATATAAAATAGTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTTGGAGGAAACAATGTAATTATATTATAATATAAAATAGTTTT  674

seq1  TTTTTTAATTTTAAAGAAATGACAACTATTTATTTGATACATCTGAAGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTTTAAAGAAATGACAACTATTTATTTGATACATCTGAAGCC  724

seq1  CAAGCAGAAATCTTGCTATATTTTCTTGAATAAGTCCATCCAGGCAAACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAAATCTTGCTATATTTTCTTGAATAAGTCCATCCAGGCAAACT  774

seq1  TCATCACTTGAAAATTGAAAAGCTGTAAAGTACACATCATAAAATAAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTGAAAATTGAAAAGCTGTAAAGTACACATCATAAAATAAAAT  824

seq1  GATAAGTTTCTCATCATATTTAAGTTATATAAATTAAAAACCCTGTGTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTTCTCATCATATTTAAGTTATATAAATTAAAAACCCTGTGTTA  874

seq1  ATGCTAGTCAGTAGGATATTTAAAATCATCAGAACAAACGGCTCCAAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTCAGTAGGATATTTAAAATCATCAGAACAAACGGCTCCAAAGT  924

seq1  AAAGATAACTTGAGGAACCATCAAATGTCCCAGATCTGCTGTGTACAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAACTTGAGGAACCATCAAATGTCCCAGATCTGCTGTGTACAATG  974

seq1  CCATTGTTACTCAAAAGCAAAATGTCCCTGATACGCTAATTTGTTTCAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTACTCAAAAGCAAAATGTCCCTGATACGCTAATTTGTTTCAAC  1024

seq1  ACGTGGTTACCGGCACATGATGCTGTTTGGAATTC  1080
      |||||||||||||||||||||||||||||||||||
seq2  ACGTGGTTACCGGCACATGATGCTGTTTGGAATTC  1059