BAC Information

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BAC

Clone NameB6Ng01-140G15
Chromosome2 (Build37)
Map Location 173,701,796 - 173,846,741
singlet/doubletdoublet
Overlap geneLOC664880, LOC100043912
Upstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189
Downstream geneLOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G15.bB6Ng01-140G15.g
ACCDH939151DH939152
length1,096860
definitionDH939151|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G15, 5' end.DH939152|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,701,796 - 173,702,907)(173,845,882 - 173,846,741)
sequence
gaattcattaatcatgtgaggggtgacttgatcctccacacactgtttat
gccttggcctgcatcttcattccacaagcaatttgcttgaggaacaaaat
ttttgtttcttgaagtcaggggcctgctggcctgatgcaggtaaaggcag
atgctgaagatcaatttcagagagtccccaaggctctgcctggaatcaag
gagaggcccgaggtcatggacacttcccagtcatgtgcctacaatgctgc
ctgtacctctgtgctgggcactgctgtgttatatcctcaaaatgtggaat
cccagccccatgacacattataaaagtttggataggaaagctgatgcagg
aagaatggagttaatgctgaagcaagggactgagacagtttcctctctac
agttagatggaaaaccagaacaggatgtcatgaaccctgggagcacagca
cagggtggttttttttctgggatcacacagcttggagctgtagggcactc
cacttactccatccacaccaggttaggaaatccagcttgtactgctaagt
tgcgaaacggcaaaataactgaaatttaaatcacaaatatctaccaaacc
cttattgttttcaagtcaacatgagctgggtcaagtacagaagacaaaaa
cagtctgcagttgtaaccaagccggtgaaaacagtcatgcagaggacccc
gatattagagaaccagggtgacttcagcagcaaatctttattgataagac
ttgtaagtactaagagctactataagagagaatgaaaagttctcttttgt
aatcaattattactttttctttttattggttatttattcatttacatttc
aaatgttgttccccttcctggtttccccccagaaaccccctatcccactc
cccttacccctgcctctatgacgtgcacctctacccacccacactcctgc
ctcactgccaaatcggggcatcagcctctacagaccaagggcctcccctg
ccattggtcccaataaagtaatcctctgtgacatacacgctggagccatg
gtccctccacaatgctcctcggtttggttagtccttggagctctgg
gaattcatttcctgctcaggagcgggaagctccttgccatgttcttcctc
gtgcacctctttcggtgacaatgtgagctgcacaggtgggcttggtaccc
actcttagcattctcttcagtgttcacggggctcagactctaggatatat
attgcacagctggggtgaccactctaatgctgctcttggagagagccttg
ttcagcctaccctacctccagcagccaggccagggaagacatgtctcaac
ttgggaatagcagccaggcctcatctcaagttccaggccccatgctgggg
ccagacagatcctgaaatacaattagtgagtcgtgccacctcagtccaac
tcctaccaggccttcagctccgcggctcgaggctccccatggcgggcttc
attttcgtacatcccaacaggcagagctgtttgcttcgctgacttgttca
aggtactgcttttcaaaacacagcagttgtagtttaatgaaacatgaaaa
agaaaaccctccctgtattcctcaccccctgcccgcacaaaataaataaa
cccacagtacagaggacctgtaactggagacggtatgccagccagccagc
aaatgtccaagtccttagtgagaagtagagagggcagaggagacctttgt
aaatgacagcaactacggaacttggcttggttccagttggggaccatgga
taggatgacatgtactacccaaattgaatctcctggaggtggcacgtgtc
ccttacactcagtttccagcccttgatggagacgaaagattgagacctct
catggaatatttgcaagcataactagtttgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173701796_173702907
seq2: B6Ng01-140G15.b_47_1142

seq1  GAATTCATTAATCATGTGAGGGGTGACTTGATCCTCCACACACTGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATCATGTGAGGGGTGACTTGATCCTCCACACACTGTTTAT  50

seq1  GCCTTGGCCTGCATCTTCATTCCACAAGCAATTTGCTTGAGGAACAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCCTGCATCTTCATTCCACAAGCAATTTGCTTGAGGAACAAAAT  100

seq1  TTTTGTTTCTTGAAGTCAGGGGCCTGCTGGCCTGATGCAGGTAAAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTTGAAGTCAGGGGCCTGCTGGCCTGATGCAGGTAAAGGCAG  150

seq1  ATGCTGAAGATCAATTTCAGAGAGTCCCCAAGGCTCTGCCTGGAATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAGATCAATTTCAGAGAGTCCCCAAGGCTCTGCCTGGAATCAAG  200

seq1  GAGAGGCCCGAGGTCATGGACACTTCCCAGTCATGTGCCTACAATGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCCGAGGTCATGGACACTTCCCAGTCATGTGCCTACAATGCTGC  250

seq1  CTGTACCTCTGTGCTGGGCACTGCTGTGTTATATCCTCAAAATGTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTCTGTGCTGGGCACTGCTGTGTTATATCCTCAAAATGTGGAAT  300

seq1  CCCAGCCCCATGACACATTATAAAAGTTTGGATAGGAAAGCTGATGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCATGACACATTATAAAAGTTTGGATAGGAAAGCTGATGCAGG  350

seq1  AAGAATGGAGTTAATGCTGAAGCAAGGGACTGAGACAGTTTCCTCTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGAGTTAATGCTGAAGCAAGGGACTGAGACAGTTTCCTCTCTAC  400

seq1  AGTTAGATGGAAAACCAGAACAGGATGTCATGAACCCTGGGAGCACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATGGAAAACCAGAACAGGATGTCATGAACCCTGGGAGCACAGCA  450

seq1  CAGGGTGGTTTTTTTTCTGGGATCACACAGCTTGGAGCTGTAGGGCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGTTTTTTTTCTGGGATCACACAGCTTGGAGCTGTAGGGCACTC  500

seq1  CACTTACTCCATCCACACCAGGTTAGGAAATCCAGCTTGTACTGCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTCCATCCACACCAGGTTAGGAAATCCAGCTTGTACTGCTAAGT  550

seq1  TGCGAAACGGCAAAATAACTGAAATTTAAATCACAAATATCTACCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAACGGCAAAATAACTGAAATTTAAATCACAAATATCTACCAAACC  600

seq1  CTTATTGTTTTCAAGTCAACATGAGCTGGGTCAAGTACAGAAGACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTTTTCAAGTCAACATGAGCTGGGTCAAGTACAGAAGACAAAAA  650

seq1  CAGTCTGCAGTTGTAACCAAGCCGGTGAAAACAGTCATGCAGAGGACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCAGTTGTAACCAAGCCGGTGAAAACAGTCATGCAGAGGACCCC  700

seq1  GATATTAGAGAACCAGGGTGACTTCAGCAGCAAATCTTTATTGATAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGAGAACCAGGGTGACTTCAGCAGCAAATCTTTATTGATAAGAC  750

seq1  TTGTAAGTACTAAGAGCTACTATAAGAGAGAATG-AAAGTTCTCTTTTGT  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTAAGTACTAAGAGCTACTATAAGAGAGAATGAAAAGTTCTCTTTTGT  800

seq1  AATCAATTATTACTTTTTCTTTTTTATTGGTTATTTTATTCATTTACATT  849
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AATCAATTATTACTTTTTC-TTTTTATTGGTTA-TTTATTCATTTACATT  848

seq1  TCAAATGTTGTTCCCCTTCCTGGTTTCCCCCCCAGAAACCCCCTATCCCA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAAATGTTGTTCCCCTTCCTGGTTT-CCCCCCAGAAACCCCCTATCCCA  897

seq1  CTCCCCTTACCCCTGCCTCTATGACGGTGCACCTCTACCCACCCACCAAC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||  ||
seq2  CTCCCCTTACCCCTGCCTCTATGAC-GTGCACCTCTACCCACCCAC--AC  944

seq1  TCCTGCCTCACTGCCAAATCGGGGGCATCAAGCCTCCACAGGACCAAGGG  999
      |||||||||||||||||||| |||||||| |||||| ||| |||||||||
seq2  TCCTGCCTCACTGCCAAATC-GGGGCATC-AGCCTCTACA-GACCAAGGG  991

seq1  CCTCCCCTGCCATTGGTCCCAGATAAAGTAATCCTCTGTGACATACACAG  1049
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  CCTCCCCTGCCATTGGTCCCA-ATAAAGTAATCCTCTGTGACATACAC-G  1039

seq1  CTGGAGCCATGGGTCCCTCCACATGTGCTCTTCGGTTTGTGGTTTAGTCC  1099
      |||||||||| ||||||||||||  ||||| |||||||   | ||||| |
seq2  CTGGAGCCAT-GGTCCCTCCACA-ATGCTCCTCGGTTT---GGTTAGT-C  1083

seq1  CTGGGAGCTCTGG  1112
      || ||||||||||
seq2  CTTGGAGCTCTGG  1096

seq1: chr2_173845882_173846741
seq2: B6Ng01-140G15.g_66_925 (reverse)

seq1  CACACACACACACACACACACACACACACACAAACTAGTTATGCTTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAAACTAGTTATGCTTGCAA  50

seq1  ATATTCCATGAGAGGTCTCAATCTTTCGTCTCCATCAAGGGCTGGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCATGAGAGGTCTCAATCTTTCGTCTCCATCAAGGGCTGGAAACT  100

seq1  GAGTGTAAGGGACACGTGCCACCTCCAGGAGATTCAATTTGGGTAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAGGGACACGTGCCACCTCCAGGAGATTCAATTTGGGTAGTACA  150

seq1  TGTCATCCTATCCATGGTCCCCAACTGGAACCAAGCCAAGTTCCGTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCTATCCATGGTCCCCAACTGGAACCAAGCCAAGTTCCGTAGTT  200

seq1  GCTGTCATTTACAAAGGTCTCCTCTGCCCTCTCTACTTCTCACTAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATTTACAAAGGTCTCCTCTGCCCTCTCTACTTCTCACTAAGGAC  250

seq1  TTGGACATTTGCTGGCTGGCTGGCATACCGTCTCCAGTTACAGGTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATTTGCTGGCTGGCTGGCATACCGTCTCCAGTTACAGGTCCTCT  300

seq1  GTACTGTGGGTTTATTTATTTTGTGCGGGCAGGGGGTGAGGAATACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGGGTTTATTTATTTTGTGCGGGCAGGGGGTGAGGAATACAGGG  350

seq1  AGGGTTTTCTTTTTCATGTTTCATTAAACTACAACTGCTGTGTTTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTCTTTTTCATGTTTCATTAAACTACAACTGCTGTGTTTTGAAA  400

seq1  AGCAGTACCTTGAACAAGTCAGCGAAGCAAACAGCTCTGCCTGTTGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACCTTGAACAAGTCAGCGAAGCAAACAGCTCTGCCTGTTGGGAT  450

seq1  GTACGAAAATGAAGCCCGCCATGGGGAGCCTCGAGCCGCGGAGCTGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAAAATGAAGCCCGCCATGGGGAGCCTCGAGCCGCGGAGCTGAAGG  500

seq1  CCTGGTAGGAGTTGGACTGAGGTGGCACGACTCACTAATTGTATTTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGAGTTGGACTGAGGTGGCACGACTCACTAATTGTATTTCAGG  550

seq1  ATCTGTCTGGCCCCAGCATGGGGCCTGGAACTTGAGATGAGGCCTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGGCCCCAGCATGGGGCCTGGAACTTGAGATGAGGCCTGGCTG  600

seq1  CTATTCCCAAGTTGAGACATGTCTTCCCTGGCCTGGCTGCTGGAGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCAAGTTGAGACATGTCTTCCCTGGCCTGGCTGCTGGAGGTAGG  650

seq1  GTAGGCTGAACAAGGCTCTCTCCAAGAGCAGCATTAGAGTGGTCACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTGAACAAGGCTCTCTCCAAGAGCAGCATTAGAGTGGTCACCCCA  700

seq1  GCTGTGCAATATATATCCTAGAGTCTGAGCCCCGTGAACACTGAAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAATATATATCCTAGAGTCTGAGCCCCGTGAACACTGAAGAGAA  750

seq1  TGCTAAGAGTGGGTACCAAGCCCACCTGTGCAGCTCACATTGTCACCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAGTGGGTACCAAGCCCACCTGTGCAGCTCACATTGTCACCGAA  800

seq1  AGAGGTGCACGAGGAAGAACATGGCAAGGAGCTTCCCGCTCCTGAGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCACGAGGAAGAACATGGCAAGGAGCTTCCCGCTCCTGAGCAGG  850

seq1  AAATGAATTC  860
      ||||||||||
seq2  AAATGAATTC  860