BAC Information

Click to search

BAC

Clone NameB6Ng01-140K04
Chromosome2 (Build37)
Map Location 125,099,178 - 125,255,162
singlet/doubletdoublet
Overlap geneA530010F05Rik, LOC100043698, Fbn1
Upstream geneLOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut
Downstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140K04.bB6Ng01-140K04.g
ACCDH939310DH939311
length1,1071,129
definitionDH939310|Mus musculus domesticus DNA, BAC clone: B6Ng01-140K04, 5' end.DH939311|Mus musculus domesticus DNA, BAC clone: B6Ng01-140K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,099,178 - 125,100,288)(125,254,015 - 125,255,162)
sequence
gaattcctagctctttgtagctgaaactttcagccaggaaaccatgtgaa
gaatccattcctcttcaggcatttcaccctcacctgtgcatcatttctga
cagtgctgtgggagaccattgagacaacacattttcctgtcagagcacca
gcatatatttgaacagttacgtttttgttaggtagggatattagtacttc
cctaagtgctggctgtgtgggcctgatggctgtttcttaagtgactggca
atgacacccccccaccccaccccatttaacgttttaaaaagctagtcact
ggctgtcacttgtcagcatccttgccagtcctgtggaacactgtctagaa
aaagcataatttggggtttctgcttcttcctgggtatgccctttctggct
aaggtgtaattgaagagaaagtataacagggttcccagcttcaaacatag
cacagccctagatttgacagcgaatataaatatggagatactgaatctaa
ataagaaatttccaaaattaaaacgaaatacagctaatatgtcaggaaca
gacatacaaccctgcaatatatagtttttttctcagatttttttaaataa
aaatttagacacttaagtaatctttcactttccgttggaaatttccctta
tgtgaaagccatttgcaactaattatgaagtgacatcatccaagacttta
caatcttacctctggaaactcccatgataggatatcactaggtttttccc
tctggctcatttaagaagagctggccacatgtctaaatggcacttcctga
aagcaaggcagcttacctgtccatgaagtttgctgagtattggcttttaa
cgtgtcaccaacacatagccacacataggtgcaatcatgctggttctggg
gcttccaggaggtattggcgaggaagatgcctggcacttatgcatcctgg
ggcaaacccaacagtgacacacgcaccattgtctgaaattgtctgttctt
aggcttgacatgcgtgttccagacaattccagaatctcatacatgcacgt
gggtttgagtagtaacctgataagctggttctggagttctaccctatctt
ccacagt
gaattcttggcttaagcaccattagctcagctctgttggtgacacaccca
tcgtactgacggaatcctggctggaacggcaattgctcagctgcgctata
gacaaaccctgctggctgacctggtttaaacctggatttcttgacgccat
ctctggtgtgtgccaaggtgaaaaaaacacctccgttgccccttcccttg
ctcctctggaggggaaacaagttgccacctggcaggagagttcctcgggc
tcccatccaaagtagtaacacgagttagtgagagcagtcctgggcaggga
agtaaggaagtcaggttcagtgtcggctctgactttcaatggccatgttg
accttgagcaaatcatttcactgctcagcttagggtttttcttctgtagg
gataatttgggccagatgttccctgtggggctttcagatcctgaaagcaa
gggattcatttaaggttagcaaactcttgaatgaatagatatttgtgttc
cacacactggatattctttctgcgtgactcctgcctcttcctacagagca
tggctacttctgtgtagtctcctagtctgtgtacagcccccttgccctgt
agtcttgggcttagttgtctcagagcctttgcttctctgaagtccacact
gaagaggagcatcttaaactctgtaggatagggccggtgactatgcctct
ccgtttgcctctcatgggtgggtggtccatactgagctactttgttgtct
gctttttcctgtggaaaacttagtcaggcttcactgaaatcttgtgcttg
agaataggtgttttatgtgtcacgtccttcttcattctggacaacttgag
aaggaacatctgtgatatacacttgttcctattgtgacccagtagccaca
ttgctaatagagatagactgtgttctggtccatccatccacccattcatc
tatctacagcttagcactgcccacagtaaatctggtgctctgtacgagtg
ttcagttagccttgtgaagtctcagagaaaattgcttctgagattcttag
agtctgatcgggtgagccgactctttcacttattttatccagccttcagg
ggaacttacctcacatgcttctacgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_125099178_125100288
seq2: B6Ng01-140K04.b_46_1152

seq1  GAATTCCTAGCTCTTTGTAGCTGAAACTTTCAGCCAGGAAACCATGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCTCTTTGTAGCTGAAACTTTCAGCCAGGAAACCATGTGAA  50

seq1  GAATCCATTCCTCTTCAGGCATTTCACCCTCACCTGTGCATCATTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATTCCTCTTCAGGCATTTCACCCTCACCTGTGCATCATTTCTGA  100

seq1  CAGTGCTGTGGGAGACCATTGAGACAACACATTTTCCTGTCAGAGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGTGGGAGACCATTGAGACAACACATTTTCCTGTCAGAGCACCA  150

seq1  GCATATATTTGAACAGTTACGTTTTTGTTAGGTAGGGATATTAGTACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTTGAACAGTTACGTTTTTGTTAGGTAGGGATATTAGTACTTC  200

seq1  CCTAAGTGCTGGCTGTGTGGGCCTGATGGCTGTTTCTTAAGTGACTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGCTGGCTGTGTGGGCCTGATGGCTGTTTCTTAAGTGACTGGCA  250

seq1  ATGACACCCCCCCACCCCACCCCATTTAACGTTTTAAAAAGCTAGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCCCCCCACCCCACCCCATTTAACGTTTTAAAAAGCTAGTCACT  300

seq1  GGCTGTCACTTGTCAGCATCCTTGCCAGTCCTGTGGAACACTGTCTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCACTTGTCAGCATCCTTGCCAGTCCTGTGGAACACTGTCTAGAA  350

seq1  AAAGCATAATTTGGGGTTTCTGCTTCTTCCTGGGTATGCCCTTTCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAATTTGGGGTTTCTGCTTCTTCCTGGGTATGCCCTTTCTGGCT  400

seq1  AAGGTGTAATTGAAGAGAAAGTATAACAGGGTTCCCAGCTTCAAACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTAATTGAAGAGAAAGTATAACAGGGTTCCCAGCTTCAAACATAG  450

seq1  CACAGCCCTAGATTTGACAGCGAATATAAATATGGAGATACTGAATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCTAGATTTGACAGCGAATATAAATATGGAGATACTGAATCTAA  500

seq1  ATAAGAAATTTCCAAAATTAAAACGAAATACAGCTAATATGTCAGGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATTTCCAAAATTAAAACGAAATACAGCTAATATGTCAGGAACA  550

seq1  GACATACAACCCTGCAATATATAGTTTTTTTCTCAGATTTTTTTAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACAACCCTGCAATATATAGTTTTTTTCTCAGATTTTTTTAAATAA  600

seq1  AAATTTAGACACTTAAGTAATCTTTCACTTTCCGTTGGAAATTTCCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGACACTTAAGTAATCTTTCACTTTCCGTTGGAAATTTCCCTTA  650

seq1  TGTGAAAGCCATTTGCAACTAATTATGAAGTGACATCATCCAAGACTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGCCATTTGCAACTAATTATGAAGTGACATCATCCAAGACTTTA  700

seq1  CAATCTTACCTCTGGAAACTCCCATGATAGGATATCACTAGGTTTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTACCTCTGGAAACTCCCATGATAGGATATCACTAGGTTTTTCCC  750

seq1  TCTGGCTCATTTAAGAAGAGCTGGCCACATGTCTAAATGGCACTTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCATTTAAGAAGAGCTGGCCACATGTCTAAATGGCACTTCCTGA  800

seq1  AAGCAAGGCAGCTTACCTGTCCATGAAGTTTGCTGAGTAATTGGCTTCTA  850
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AAGCAAGGCAGCTTACCTGTCCATGAAGTTTGCTGAGT-ATTGGCTTTTA  849

seq1  ACGTGTCACCAACACATAGCCACACATAGGTGCAATCATGCTGGTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCACCAACACATAGCCACACATAGGTGCAATCATGCTGGTTCTGG  899

seq1  GGCTTCCAGGAGGTATTGGCGAGGAAGATGCCTGGCACTTATGCATCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAGGAGGTATTGGCGAGGAAGATGCCTGGCACTTATGCATCCTG  949

seq1  GGGCAAACCCAACAGTTGACACACGCACCATTGTCTGAAATTGTCTGTTC  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGCAAACCCAACAG-TGACACACGCACCATTGTCTGAAATTGTCTGTTC  998

seq1  TTAGGCTTGACATGCGTGTTCCAGACCATTCCAGAATTCTCATACATGCA  1050
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TTAGGCTTGACATGCGTGTTCCAGACAATTCCAGAA-TCTCATACATGCA  1047

seq1  CGTGGGGTTTGAGTAGTAACATGATAAGCT-GTTCT-GAGTTCTACCTCA  1098
      ||| |||||||||||||||| ||||||||| ||||| |||||||||| | 
seq2  CGT-GGGTTTGAGTAGTAACCTGATAAGCTGGTTCTGGAGTTCTACC-CT  1095

seq1  TTCTTCCAGCAGT  1111
       ||||||| ||||
seq2  ATCTTCCA-CAGT  1107

seq1: chr2_125254015_125255162
seq2: B6Ng01-140K04.g_71_1199 (reverse)

seq1  AAGTCGGTCAGAAGCATGTGAGTTAAGTTCCCCCTGAGAGGCTGGGTTTA  50
      ||||||   ||||||||||||| |||||| ||||||| |||||||   ||
seq2  AAGTCG--TAGAAGCATGTGAGGTAAGTT-CCCCTGA-AGGCTGG--ATA  44

seq1  AAATAAGTGGAAGAGTGCTGGCTCAACCCAGATTCAGACCCTCTAAGAAT  100
      ||||||||| ||||||   |||||| || |   |||||  ||||||||||
seq2  AAATAAGTGAAAGAGT--CGGCTCACCCGA---TCAGA--CTCTAAGAAT  87

seq1  CCTCAAGAAGCCATGTTCTCTGAGACCTTCACAAGGCTAACTGACACCTC  150
       ||| |||||| || |||||||||| ||||||||||||||||||   |||
seq2  -CTC-AGAAGCAATTTTCTCTGAGA-CTTCACAAGGCTAACTGAACACTC  134

seq1  TGTACAGAGCACCAGATTTACTGTGGGCAGTGCTTAGGCTGTAGATAGAT  200
       |||||||||||||||||||||||||||||||| || |||||||||||||
seq2  -GTACAGAGCACCAGATTTACTGTGGGCAGTGC-TAAGCTGTAGATAGAT  182

seq1  GGATGGGTGGATGGATGGGACCAGAACACAGTCCTATCTCTATTAGCAAT  250
      | |||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  GAATGGGTGGATGGAT-GGACCAGAACACAGT-CTATCTCTATTAGCAAT  230

seq1  GT-GCTACTGGGTCACAATAGGGACAAGTGTATATCACAGATGTTCCTTC  299
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGGCTACTGGGTCACAATAGGAACAAGTGTATATCACAGATGTTCCTTC  280

seq1  TCAGGTTGTCCAGATTGAGGAAGGACGTGACACATAAAACACCTATTCTC  349
      ||| |||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TCAAGTTGTCCAGAATGAAGAAGGACGTGACACATAAAACACCTATTCTC  330

seq1  AAGCACAAGATTTCAGTGAAGCCTGACTAAGTTTTCCACAGGAAAAAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAGATTTCAGTGAAGCCTGACTAAGTTTTCCACAGGAAAAAGCA  380

seq1  GACAACAAAGTAGCTCAGTATGGACCACCCACCCATGAGAGGCAAACGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAAAGTAGCTCAGTATGGACCACCCACCCATGAGAGGCAAACGGA  430

seq1  GAGGCATAGTCACCGGCCCTATCCTACAGAGTTTAAGATGCTCCTCTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATAGTCACCGGCCCTATCCTACAGAGTTTAAGATGCTCCTCTTCA  480

seq1  GTGTGGACTTCAGAGAAGCAAAGGCTCTGAGACAACTAAGCCCAAGACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACTTCAGAGAAGCAAAGGCTCTGAGACAACTAAGCCCAAGACTA  530

seq1  CAGGGCAAGGGGGCTGTACACAGACTAGGAGACTACACAGAAGTAGCCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGGGGGCTGTACACAGACTAGGAGACTACACAGAAGTAGCCAT  580

seq1  GCTCTGTAGGAAGAGGCAGGAGTCACGCAGAAAGAATATCCAGTGTGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAGGAAGAGGCAGGAGTCACGCAGAAAGAATATCCAGTGTGTGG  630

seq1  AACACAAATATCTATTCATTCAAGAGTTTGCTAACCTTAAATGAATCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAATATCTATTCATTCAAGAGTTTGCTAACCTTAAATGAATCCCT  680

seq1  TGCTTTCAGGATCTGAAAGCCCCACAGGGAACATCTGGCCCAAATTATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGGATCTGAAAGCCCCACAGGGAACATCTGGCCCAAATTATCC  730

seq1  CTACAGAAGAAAAACCCTAAGCTGAGCAGTGAAATGATTTGCTCAAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGAAAAACCCTAAGCTGAGCAGTGAAATGATTTGCTCAAGGTC  780

seq1  AACATGGCCATTGAAAGTCAGAGCCGACACTGAACCTGACTTCCTTACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCCATTGAAAGTCAGAGCCGACACTGAACCTGACTTCCTTACTT  830

seq1  CCCTGCCCAGGACTGCTCTCACTAACTCGTGTTACTACTTTGGATGGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCAGGACTGCTCTCACTAACTCGTGTTACTACTTTGGATGGGAG  880

seq1  CCCGAGGAACTCTCCTGCCAGGTGGCAACTTGTTTCCCCTCCAGAGGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGAACTCTCCTGCCAGGTGGCAACTTGTTTCCCCTCCAGAGGAGC  930

seq1  AAGGGAAGGGGCAACGGAGGTGTTTTTTTCACCTTGGCACACACCAGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGGGCAACGGAGGTGTTTTTTTCACCTTGGCACACACCAGAGA  980

seq1  TGGCGTCAAGAAATCCAGGTTTAAACCAGGTCAGCCAGCAGGGTTTGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCAAGAAATCCAGGTTTAAACCAGGTCAGCCAGCAGGGTTTGTCT  1030

seq1  ATAGCGCAGCTGAGCAATTGCCGTTCCAGCCAGGATTCCGTCAGTACGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGCAGCTGAGCAATTGCCGTTCCAGCCAGGATTCCGTCAGTACGAT  1080

seq1  GGGTGTGTCACCAACAGAGCTGAGCTAATGGTGCTTAAGCCAAGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTCACCAACAGAGCTGAGCTAATGGTGCTTAAGCCAAGAATTC  1129