BAC Information

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BAC

Clone NameB6Ng01-140M16
Chromosome2 (Build37)
Map Location 171,598,328 - 171,721,300
singlet/doubletdoublet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140M16.bB6Ng01-140M16.g
ACCDH939423DH939424
length1,0631,047
definitionDH939423|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M16, 5' end.DH939424|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,598,328 - 171,599,384)(171,720,249 - 171,721,300)
sequence
gaattcactcacctgtttgctgttcttccatcctttcagtaaatttacta
ttttcacacattgtataataatgaggctaagacatttacagcaaaggaaa
attggcttctctccccaccacccagtaaattccatgtagataatatactt
ttaaagttcaagcgagcattggaaaaagcataggtgactgggttaatgtg
tccatggataagtaggcattcatctcaagctgtgtccattaccgagggca
ggaactcagcctccttgctacccactgatgctttggaagaaggcacataa
atgatagctagccagcatgctgttgcccagagtgaacctcggtccttaaa
tcagagagagaataatccaaccaagccccttcggagcaaagctactgagg
agtacaaaagcatcttttagatgtcgtgttgcaaatacaggggtgttgtg
ggaggggggccaagatgaaagcctgacaagacctctagcttgtgtctgtc
cccttcaggtatctcagtgtcctcttttacagcattctgctcttgccatg
actggcattgcttcactctccatgagattgggagtcacctagaagacata
gctttgggcacacctatggggactttttcagagagattgaactaaggaga
aaaggccctaagaaaaaaataaggagaaaagacccatcccgaatgtgtcc
tacagcttcctgtggcctgagtccaagcctcagaagaaagatggggaaaa
agaaaggaaaccaaacaccaccgttcatctgtctccaactcctgcctgtg
gactcacgtgaccagccacctcccagtcccggccctacagctagacttgc
tttcatttctcaacttctccaccttcaagctctgagccctaaacaaccct
ctcctggaggtgctttggtcagggattttatcacagcagtgaataaaatt
taacacggacacgtgtctgtttcagtaaagagtagctaaagggttctgtg
tcattttcttagacttaaggcgcttcaatattctgggggaaggatctgat
taggagccacctt
gaattcaatttccagtcctctgatggagcagtacgtgctcttaaccattg
aactacctccccagcgcctcatcttcaaaatgtcactttcaaagccaagc
tagagtgtgattctctgacaggtataacgaagatgcgttgcaaatcgtac
ctcagtcatcgagaaaccaggaggatcttatgtgaagtcttaaaggcatg
tgtgcacgaggagagaatgttcaaacaaagctgcaatagaggcgaagcta
gactctccgcagtggtgggagcacagaatttgagtgtctatgggcaagag
cgatactgaccattatctgctttggtctaggattccagcaaagctccata
gaacagaaaatcttctcatctaaaaaccatgtagggttgcagcggactac
aactgagcacattttaaagtaaatgacaaaatagcaggcttctctgtgcc
gtcttcatttagccttgggtttggttgattcttcatcattccctcttctc
acactccatccttcatccctgtatgaaccatccaggccagtatggcttcc
ttccactgtaactgtgcacatatacgatgtgtataggggactgtgtatat
gcaggtctatgtgcacttgtgtgcacgcacttgtggggaactcaggctgt
cagaaatcttccttggttgctctccaccttattcactgaagccaggtctc
tcaaccaaacccagagctcacacatagggttattctcactggccagtttg
ctccagaaatcccatttccacagttgaagttacagaagggggagggagga
gctttccacagccacctgtcagttatataggcagtgggagatctaattct
tcttcctgtaaatgtgtttaagcacatttaccatagaagctcttctccct
agcccccgttaaacattttaaagtaacactcttaaaccacacagtgttag
ttctgtcaggaggaagcagctccatccatcctttcagattcctacttgaa
ttattagtaatggtctcagaggagtcatgtgtactgtatattgcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171598328_171599384
seq2: B6Ng01-140M16.b_53_1107

seq1  GAATTCACTCACCTGTTTGCTGTTCTTCCATCCTTTCAGTAAATTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACCTGTTTGCTGTTCTTCCATCCTTTCAGTAAATTTACTA  50

seq1  TTTTCACACATTGTATAATAATGAGGCTAAGACATTTACAGCAAAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACATTGTATAATAATGAGGCTAAGACATTTACAGCAAAGGAAA  100

seq1  ATTGGCTTCTCTCCCCACCACCCAGTAAATTCCATGTAGATAATATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTCTCTCCCCACCACCCAGTAAATTCCATGTAGATAATATACTT  150

seq1  TTAAAGTTCAAGCGAGCATTGGAAAAAGCATAGGTGACTGGGTTAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTCAAGCGAGCATTGGAAAAAGCATAGGTGACTGGGTTAATGTG  200

seq1  TCCATGGATAAGTAGGCATTCATCTCAAGCTGTGTCCATTACCGAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGATAAGTAGGCATTCATCTCAAGCTGTGTCCATTACCGAGGGCA  250

seq1  GGAACTCAGCCTCCTTGCTACCCACTGATGCTTTGGAAGAAGGCACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAGCCTCCTTGCTACCCACTGATGCTTTGGAAGAAGGCACATAA  300

seq1  ATGATAGCTAGCCAGCATGCTGTTGCCCAGAGTGAACCTCGGTCCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCTAGCCAGCATGCTGTTGCCCAGAGTGAACCTCGGTCCTTAAA  350

seq1  TCAGAGAGAGAATAATCCAACCAAGCCCCTTCGGAGCAAAGCTACTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGAGAATAATCCAACCAAGCCCCTTCGGAGCAAAGCTACTGAGG  400

seq1  AGTACAAAAGCATCTTTTAGATGTCGTGTTGCAAATACAGGGGTGTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAAGCATCTTTTAGATGTCGTGTTGCAAATACAGGGGTGTTGTG  450

seq1  GGAGGGGGGCCAAGATGAAAGCCTGACAAGACCTCTAGCTTGTGTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGCCAAGATGAAAGCCTGACAAGACCTCTAGCTTGTGTCTGTC  500

seq1  CCCTTCAGGTATCTCAGTGTCCTCTTTTACAGCATTCTGCTCTTGCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGGTATCTCAGTGTCCTCTTTTACAGCATTCTGCTCTTGCCATG  550

seq1  ACTGGCATTGCTTCACTCTCCATGAGATTGGGAGTCACCTAGAAGACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATTGCTTCACTCTCCATGAGATTGGGAGTCACCTAGAAGACATA  600

seq1  GCTTTGGGCACACCTATGGGGACTTTTTCAGAGAGATTGAACTAAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGCACACCTATGGGGACTTTTTCAGAGAGATTGAACTAAGGAGA  650

seq1  AAAGGCCCTAAGAAAAAAATAAGGAGAAAAGACCCATCCCGAATGTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCTAAGAAAAAAATAAGGAGAAAAGACCCATCCCGAATGTGTCC  700

seq1  TACAGCTTCCTGTGGCCTGAGTCCAAGCCTCAGAAGAAAGATGGGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCCTGTGGCCTGAGTCCAAGCCTCAGAAGAAAGATGGGGAAAA  750

seq1  AGAAAGGAAACCAAACACCACCGTTCATCTGTCTCCAACTCCTGCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAACCAAACACCACCGTTCATCTGTCTCCAACTCCTGCCTGTG  800

seq1  GACTCACGTGACCAGCCACCTCCCAGTCCCGGCCCTACAGCTAGACTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACGTGACCAGCCACCTCCCAGTCCCGGCCCTACAGCTAGACTTGC  850

seq1  TTTCATTTCCTCAACTTCTCCACCTTCAAGCTCTGAGCCCTAAACAACCC  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTT-CTCAACTTCTCCACCTTCAAGCTCTGAGCCCTAAACAACCC  899

seq1  TCTCCTGGAAGATGCTTTGGCCAGGGATTTTATCACAGCAGTGATAAAAT  950
      |||||||| || |||||||| |||||||||||||||||||||||  ||| 
seq2  TCTCCTGG-AGGTGCTTTGGTCAGGGATTTTATCACAGCAGTGAATAAAA  948

seq1  TTTAACACGGACACGGTTCTGTATCAGTAAAGAGAAGCTAAAGGTTTCTG  1000
      |||||||||||||||  ||||| ||||||||||| ||||||||| |||||
seq2  TTTAACACGGACACGTGTCTGTTTCAGTAAAGAGTAGCTAAAGGGTTCTG  998

seq1  -GTCATTTTCTTAGACCTAAGGGCGCTTC-ATATTCCTGGGGGAAAGAAC  1048
       ||||||||||||||| ||| |||||||| ||||| ||||||||| || |
seq2  TGTCATTTTCTTAGACTTAA-GGCGCTTCAATATT-CTGGGGGAAGGATC  1046

seq1  TGATTAGGA  1057
      |||||||||
seq2  TGATTAGGA  1055

seq1: chr2_171720249_171721300
seq2: B6Ng01-140M16.g_70_1116 (reverse)

seq1  AGTGC-ATATACAGTACACATGACTCCTCTGAGACCAATTACCTACATAA  49
      ||||| |||||||||||||||||||||||||||||| |||| ||| ||||
seq2  AGTGCAATATACAGTACACATGACTCCTCTGAGACC-ATTA-CTA-ATAA  47

seq1  TTCAAGTTAGGGGAATCTG-AAGGGTGGATGGAGCTGCCTTCCTCTTGAC  98
      |||||||    |||||||| |||| |||||||||||| ||||||| ||||
seq2  TTCAAGT---AGGAATCTGAAAGGATGGATGGAGCTG-CTTCCTCCTGAC  93

seq1  AAGAACTTACACTGTTGTGTTTTAGGAGTG-TACTTTAAAATGTGTAACG  147
       |||||| |||||| |||| |||| ||||| ||||||||||||| |||||
seq2  -AGAACTAACACTG-TGTGGTTTAAGAGTGTTACTTTAAAATGTTTAACG  141

seq1  GGGGCTAGGGAG-AGAGC-TCTATGGTAAATGTGCTTAAAACACAATTTA  195
      |||||||||||| ||||| |||||||||||||||||| |||||| |||||
seq2  GGGGCTAGGGAGAAGAGCTTCTATGGTAAATGTGCTT-AAACAC-ATTTA  189

seq1  CAGGAAGAAGAATTAGATCTCCCACTGCCTATATAACTGACAGGTGGCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAAGAATTAGATCTCCCACTGCCTATATAACTGACAGGTGGCTG  239

seq1  TGG-AAGCTCCTCCCTCCCCCTTCTGTAACTTCAACTGTGGAAATGGGAT  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCTCCTCCCTCCCCCTTCTGTAACTTCAACTGTGGAAATGGGAT  289

seq1  TTCTGGAGCAAACTGGCCAGTGAGAATAACCCTATGTGTGAGCTCTGGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCAAACTGGCCAGTGAGAATAACCCTATGTGTGAGCTCTGGGT  339

seq1  TTGGTTGAGAGACCTGGCTTCAGTGAATAAGGTGGAGAGCAACCAAGGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGAGAGACCTGGCTTCAGTGAATAAGGTGGAGAGCAACCAAGGAA  389

seq1  GATTTCTGACAGCCTGAGTTCCCCACAAGTGCGTGCACACAAGTGCACAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGACAGCCTGAGTTCCCCACAAGTGCGTGCACACAAGTGCACAT  439

seq1  AGACCTGCATATACACAGTCCCCTATACACATCGTATATGTGCACAGTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCATATACACAGTCCCCTATACACATCGTATATGTGCACAGTTA  489

seq1  CAGTGGAAGGAAGCCATACTGGCCTGGATGGTTCATACAGGGATGAAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGGAAGCCATACTGGCCTGGATGGTTCATACAGGGATGAAGGA  539

seq1  TGGAGTGTGAGAAGAGGGAATGATGAAGAATCAACCAAACCCAAGGCTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGAGAAGAGGGAATGATGAAGAATCAACCAAACCCAAGGCTAA  589

seq1  ATGAAGACGGCACAGAGAAGCCTGCTATTTTGTCATTTACTTTAAAATGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACGGCACAGAGAAGCCTGCTATTTTGTCATTTACTTTAAAATGT  639

seq1  GCTCAGTTGTAGTCCGCTGCAACCCTACATGGTTTTTAGATGAGAAGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTGTAGTCCGCTGCAACCCTACATGGTTTTTAGATGAGAAGATT  689

seq1  TTCTGTTCTATGGAGCTTTGCTGGAATCCTAGACCAAAGCAGATAATGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTATGGAGCTTTGCTGGAATCCTAGACCAAAGCAGATAATGGT  739

seq1  CAGTATCGCTCTTGCCCATAGACACTCAAATTCTGTGCTCCCACCACTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCGCTCTTGCCCATAGACACTCAAATTCTGTGCTCCCACCACTGC  789

seq1  GGAGAGTCTAGCTTCGCCTCTATTGCAGCTTTGTTTGAACATTCTCTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTCTAGCTTCGCCTCTATTGCAGCTTTGTTTGAACATTCTCTCCT  839

seq1  CGTGCACACATGCCTTTAAGACTTCACATAAGATCCTCCTGGTTTCTCGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACACATGCCTTTAAGACTTCACATAAGATCCTCCTGGTTTCTCGA  889

seq1  TGACTGAGGTACGATTTGCAACGCATCTTCGTTATACCTGTCAGAGAATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGGTACGATTTGCAACGCATCTTCGTTATACCTGTCAGAGAATC  939

seq1  ACACTCTAGCTTGGCTTTGAAAGTGACATTTTGAAGATGAGGCGCTGGGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTAGCTTGGCTTTGAAAGTGACATTTTGAAGATGAGGCGCTGGGG  989

seq1  AGGTAGTTCAATGGTTAAGAGCACGTACTGCTCCATCAGAGGACTGGAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTCAATGGTTAAGAGCACGTACTGCTCCATCAGAGGACTGGAAA  1039

seq1  TTGAATTC  1052
      ||||||||
seq2  TTGAATTC  1047