BAC Information

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BAC

Clone NameB6Ng01-140N08
Chromosome2 (Build37)
Map Location 178,190,481 - 178,328,525
singlet/doubletdoublet
Overlap geneCdh26
Upstream geneLOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N08.bB6Ng01-140N08.g
ACCDH939455DH939456
length831163
definitionDH939455|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N08, 5' end.DH939456|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,190,481 - 178,191,311)(178,328,363 - 178,328,525)
sequence
gaattcctgcaggctcccagtagcctctgtccctatagcctaccagcctt
tagcagatcaaaccttgcattctaaagtaagggagatacagcagaaaggc
aggttacagtcatctaaaaatgtacacacatctctctcacatgcaggcag
atcaataattatatatatgatatcataaaatatcatatatatatatataa
tttacccaatgtttattttataattaatggcacattttgagctatgtagt
catcatgtcttattttaatattgcaatcagtgggatgtactttttacagt
attttcaggcttatgaaagaacagaacagtaagtggagggagttcccaga
atttcctatgatcagcatcttgccctgagtgatgttgtctctgttataac
taatgatctagggttttatagtattaccaaccaaagccaattgcttgcct
acttcctgtccagatgtatttttggtgttttgcatcccatgagttgataa
ggtgccctcatcacagtctcttgtagggtagctttcctgctccaaagtcc
cctaggctctactcactccccattcccttattgagaaccacaaagcttct
attatcaacatacgtttgccattgacaggctataatggagctgtactctt
acagttcatagcccttttaggctgttttctttgaaaaaaaaattatgggc
acatgtgtgtgcatgtgtgtacgcatatgtgtgtatgtatgtacatgtgt
gttagcacacatgagtatgcacatgtgcatgaatgtgtgcatatgtgtgt
gtgctaatgtgtgtgtgtgtgtgtgtgtgtg
ccccaaagcccagacttatttctattaaattgtaaatttaaattatgtgt
gtgcctgtatacacaaatgtggaggccagaagtcagcacagagtctcctt
tagtgtctctactaatttgtcatttgtttatttttgtgtgtggatagatg
tgggtgggtgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178190481_178191311
seq2: B6Ng01-140N08.b_47_877

seq1  GAATTCCTGCAGGCTCCCAGTAGCCTCTGTCCCTATAGCCTACCAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGGCTCCCAGTAGCCTCTGTCCCTATAGCCTACCAGCCTT  50

seq1  TAGCAGATCAAACCTTGCATTCTAAAGTAAGGGAGATACAGCAGAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATCAAACCTTGCATTCTAAAGTAAGGGAGATACAGCAGAAAGGC  100

seq1  AGGTTACAGTCATCTAAAAATGTACACACATCTCTCTCACATGCAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACAGTCATCTAAAAATGTACACACATCTCTCTCACATGCAGGCAG  150

seq1  ATCAATAATTATATATATGATATCATAAAATATCATATATATATATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAATTATATATATGATATCATAAAATATCATATATATATATATAA  200

seq1  TTTACCCAATGTTTATTTTATAATTAATGGCACATTTTGAGCTATGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAATGTTTATTTTATAATTAATGGCACATTTTGAGCTATGTAGT  250

seq1  CATCATGTCTTATTTTAATATTGCAATCAGTGGGATGTACTTTTTACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTCTTATTTTAATATTGCAATCAGTGGGATGTACTTTTTACAGT  300

seq1  ATTTTCAGGCTTATGAAAGAACAGAACAGTAAGTGGAGGGAGTTCCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGGCTTATGAAAGAACAGAACAGTAAGTGGAGGGAGTTCCCAGA  350

seq1  ATTTCCTATGATCAGCATCTTGCCCTGAGTGATGTTGTCTCTGTTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTATGATCAGCATCTTGCCCTGAGTGATGTTGTCTCTGTTATAAC  400

seq1  TAATGATCTAGGGTTTTATAGTATTACCAACCAAAGCCAATTGCTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCTAGGGTTTTATAGTATTACCAACCAAAGCCAATTGCTTGCCT  450

seq1  ACTTCCTGTCCAGATGTATTTTTGGTGTTTTGCATCCCATGAGTTGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTCCAGATGTATTTTTGGTGTTTTGCATCCCATGAGTTGATAA  500

seq1  GGTGCCCTCATCACAGTCTCTTGTAGGGTAGCTTTCCTGCTCCAAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTCATCACAGTCTCTTGTAGGGTAGCTTTCCTGCTCCAAAGTCC  550

seq1  CCTAGGCTCTACTCACTCCCCATTCCCTTATTGAGAACCACAAAGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTCTACTCACTCCCCATTCCCTTATTGAGAACCACAAAGCTTCT  600

seq1  ATTATCAACATACGTTTGCCATTGACAGGCTATAATGGAGCTGTACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAACATACGTTTGCCATTGACAGGCTATAATGGAGCTGTACTCTT  650

seq1  ACAGTTCATAGCCCTTTTAGGCTGTTTTCTTTGAAAAAAAAATTATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATAGCCCTTTTAGGCTGTTTTCTTTGAAAAAAAAATTATGGGC  700

seq1  ACATGTGTGTGCATGTGTGTACGCATATGTGTGTATGTATGTACATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGTGCATGTGTGTACGCATATGTGTGTATGTATGTACATGTGT  750

seq1  GTTAGCACACATGAGTATGCACATGTGCATGAATGTGTGCATATGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCACACATGAGTATGCACATGTGCATGAATGTGTGCATATGTGTGT  800

seq1  GTGCTAATGTGTGTGTGTGTGTGTGTGTGTG  831
      |||||||||||||||||||||||||||||||
seq2  GTGCTAATGTGTGTGTGTGTGTGTGTGTGTG  831

seq1: chr2_178328363_178328525
seq2: B6Ng01-140N08.g_73_235 (reverse)

seq1  GCTCACCCACCCACATCTATCCACACACAAAAATAAACAAATGACAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCCACCCACATCTATCCACACACAAAAATAAACAAATGACAAATT  50

seq1  AGTAGAGACACTAAAGGAGACTCTGTGCTGACTTCTGGCCTCCACATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGACACTAAAGGAGACTCTGTGCTGACTTCTGGCCTCCACATTTG  100

seq1  TGTATACAGGCACACACATAATTTAAATTTACAATTTAATAGAAATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAGGCACACACATAATTTAAATTTACAATTTAATAGAAATAAGT  150

seq1  CTGGGCTTTGGGG  163
      |||||||||||||
seq2  CTGGGCTTTGGGG  163