BAC Information

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BAC

Clone NameB6Ng01-141F24
Chromosome2 (Build37)
Map Location 97,266,819 - 97,328,231
singlet/doubletdoublet
Overlap geneLrrc4c
Upstream geneLOC100043267
Downstream geneLOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F24.bB6Ng01-141F24.g
ACCDH939849DH939850
length6351,049
definitionDH939849|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F24, 5' end.DH939850|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,266,819 - 97,267,453)(97,327,161 - 97,328,231)
sequence
gaattctctcaggaagagaagagccagaaagacccacattaaggtatgct
caattcacttgttatccatcttaggacttacataattgctgtatatgtta
gggagaggatgaggttgaatatttgtaaagaacacacaaatagagaacca
gtaagagtttgtaacaaagacagactttctcacatttagtaccatcttta
ggtagacttgcttaccagggttatattactctttgtcatcaaagattaat
ggagggatctggcacaaagaacagagacatgattctaccacggttttcac
cacttcctacaatattaagataatttgagttgagggggggggagttatag
aaagagccagggcactgagatgcttcctcatttaggaaagatgttacata
ttcgcccttattttaatcggcttccttctagatgtgatgttttttcagta
ccaccaaaagctctctctgttgctgtgcggctgctgctgatggcagcaca
gcaaaccacaaccatttgttgtcgtatccatattttaaatgtaaaaggcc
ggtggaagaaattttttcgattgtcataatatactattcaattattagtc
aaagcatttgtgaatgaaacggtttataaatatca
gaattcttcaggtgtatcaaaaataaaactggagttgtgttcagaatgcc
tgggaaggagcagagcaaggaatgattgtttctgtggtcacaaaggatac
agttcctggaggatgcagcttgctcatttggctgctccccagacacatga
atacttctgagaaatagcaagatagatatgcagtgtgggaagtcagagga
gtgttcaggggcataacaagtgaggggggattcccgtcaagcctctggcc
acatccagggcttcccctttaatgagttaatataaacatcaaaccaagtg
ccgaatcaatgaattcacctacttaatttcgtagttaattagtggaagcg
agtctaaaattaagtgcttaccctgcggaatagcctcacatgcacacaca
caaaggcaactgtgaaatggccaaagacttagccagacatagacagaaga
gagaatgaatatattttataagcatgatagagagacagaggaaaggccag
agatgtaaagaaaagaaataagccatctggaatttacgagaaggcgagca
agagaatgaatttccattctccatggccaagatagacccattatctgaaa
ataggtctatgaaatgcctctgactctgagagagctaaagggaatattgg
agagcaatactctgaatcaaattcttcattttacagaaacaaaggctcta
agaaagaatggcaacttgcttagagtcttgtgggcagccagcagcaatat
tctaagctccatgtgacaacaaaattcagcatcaggaaatggctgctgta
gccaggctactaaggaagcttggaagaaataagctcacacttcctgttta
ctcacacctacctgctcacattttcaacaaagagtgttagacgtggctca
tgtcatcatcagtttctggtatttatggtcagtatacatgtggtggaaat
ttaagtatacgtatattatttactgtcaaaatactcagtaagttggggaa
aagccagtttttatttgttaattcgtggaccagtgtgaatctgaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_97266819_97267453
seq2: B6Ng01-141F24.b_45_679

seq1  GAATTCTCTCAGGAAGAGAAGAGCCAGAAAGACCCACATTAAGGTATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGGAAGAGAAGAGCCAGAAAGACCCACATTAAGGTATGCT  50

seq1  CAATTCACTTGTTATCCATCTTAGGACTTACATAATTGCTGTATATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACTTGTTATCCATCTTAGGACTTACATAATTGCTGTATATGTTA  100

seq1  GGGAGAGGATGAGGTTGAATATTTGTAAAGAACACACAAATAGAGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGATGAGGTTGAATATTTGTAAAGAACACACAAATAGAGAACCA  150

seq1  GTAAGAGTTTGTAACAAAGACAGACTTTCTCACATTTAGTACCATCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTTTGTAACAAAGACAGACTTTCTCACATTTAGTACCATCTTTA  200

seq1  GGTAGACTTGCTTACCAGGGTTATATTACTCTTTGTCATCAAAGATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTTGCTTACCAGGGTTATATTACTCTTTGTCATCAAAGATTAAT  250

seq1  GGAGGGATCTGGCACAAAGAACAGAGACATGATTCTACCACGGTTTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATCTGGCACAAAGAACAGAGACATGATTCTACCACGGTTTTCAC  300

seq1  CACTTCCTACAATATTAAGATAATTTGAGTTGAGGGGGGGGGAGTTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTACAATATTAAGATAATTTGAGTTGAGGGGGGGGGAGTTATAG  350

seq1  AAAGAGCCAGGGCACTGAGATGCTTCCTCATTTAGGAAAGATGTTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCAGGGCACTGAGATGCTTCCTCATTTAGGAAAGATGTTACATA  400

seq1  TTCGCCCATATTTTAATCGGCTTCCTTCTAGATGTGATGTTTTTTCAGTA  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCCTTATTTTAATCGGCTTCCTTCTAGATGTGATGTTTTTTCAGTA  450

seq1  CCACCAAAAGCTCTCTCTGTTGCTGTGCGGCTGCTGCTGATGGCAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAAAGCTCTCTCTGTTGCTGTGCGGCTGCTGCTGATGGCAGCACA  500

seq1  GCAAACCACAACCATTTGTTGTCGTATCCATATTTTAAATGTAAAAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCACAACCATTTGTTGTCGTATCCATATTTTAAATGTAAAAGGCC  550

seq1  GGTGGAAGAAATTTTTTCGATTGTCATAATATACTATTCAATTATTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGAAATTTTTTCGATTGTCATAATATACTATTCAATTATTAGTC  600

seq1  AAAGCATTTGTGAAGGAAACGGTTTATAAATATCA  635
      |||||||||||||| ||||||||||||||||||||
seq2  AAAGCATTTGTGAATGAAACGGTTTATAAATATCA  635

seq1: chr2_97327161_97328231
seq2: B6Ng01-141F24.g_67_1115 (reverse)

seq1  AAACCTCAGAATCACACCTGTTTCCCACGATATTAAACAGATTAAAAAAC  50
      |||||||||| ||||||  ||   |||||| ||| |||| ||  ||||||
seq2  AAACCTCAGATTCACACTGGT---CCACGA-ATT-AACAAAT--AAAAAC  43

seq1  TGGCCTTTTCCCCAACTTTACTGAGTAATTTTTGACAGTAAATAATATTA  100
      ||| |||||||||||| ||||||||||  |||||||||||||||||| ||
seq2  TGG-CTTTTCCCCAAC-TTACTGAGTA--TTTTGACAGTAAATAATA-TA  88

seq1  CGTATACTTTAAATTTTCCACCACATGTTATTACCTGACCCAATAAATAC  150
      |||||||||  || ||||||||||||| |||   ||||||  ||||||||
seq2  CGTATACTT--AAATTTCCACCACATG-TAT--ACTGACC--ATAAATAC  131

seq1  CAGAAACTGATGATGAACATGAGCCACGTCTAACACTCTTTGTTGAAAAT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGATGATG-ACATGAGCCACGTCTAACACTCTTTGTTGAAAAT  180

seq1  GTTGAGCAGGTAGGTGTGAGTAAAACAGGAAGTGTGAGCTTATTTCTTCC  250
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  G-TGAGCAGGTAGGTGTGAGT-AAACAGGAAGTGTGAGCTTATTTCTTCC  228

seq1  AAGCTTCCTTAGTAGCCTGGCTACAGCAGCCATTTCCTGATGCTGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTTAGTAGCCTGGCTACAGCAGCCATTTCCTGATGCTGAATTT  278

seq1  TGTTGTCACATGGAGCTTAGAATATTGCTGCTGGCTGCCCACAAGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCACATGGAGCTTAGAATATTGCTGCTGGCTGCCCACAAGACTCT  328

seq1  AAGCAAGTTGCCATTCTTTCTTAGAGCCTTTGTTTCTGTAAAATGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTTGCCATTCTTTCTTAGAGCCTTTGTTTCTGTAAAATGAAGAA  378

seq1  TTTGATTCAGAGTATTGCTCTCCAATATTCCCTTTAGCTCTCTCAGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCAGAGTATTGCTCTCCAATATTCCCTTTAGCTCTCTCAGAGTC  428

seq1  AGAGGCATTTCATAGACCTATTTTCAGATAATGGGTCTATCTTGGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATTTCATAGACCTATTTTCAGATAATGGGTCTATCTTGGCCATG  478

seq1  GAGAATGGAAATTCATTCTCTTGCTCGCCTTCTCGTAAATTCCAGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGAAATTCATTCTCTTGCTCGCCTTCTCGTAAATTCCAGATGGC  528

seq1  TTATTTCTTTTCTTTACATCTCTGGCCTTTCCTCTGTCTCTCTATCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTTTCTTTACATCTCTGGCCTTTCCTCTGTCTCTCTATCATGC  578

seq1  TTATAAAATATATTCATTCTCTCTTCTGTCTATGTCTGGCTAAGTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATATATTCATTCTCTCTTCTGTCTATGTCTGGCTAAGTCTTTG  628

seq1  GCCATTTCACAGTTGCCTTTGTGTGTGTGCATGTGAGGCTATTCCGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCACAGTTGCCTTTGTGTGTGTGCATGTGAGGCTATTCCGCAGG  678

seq1  GTAAGCACTTAATTTTAGACTCGCTTCCACTAATTAACTACGAAATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACTTAATTTTAGACTCGCTTCCACTAATTAACTACGAAATTAAG  728

seq1  TAGGTGAATTCATTGATTCGGCACTTGGTTTGATGTTTATATTAACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAATTCATTGATTCGGCACTTGGTTTGATGTTTATATTAACTCAT  778

seq1  TAAAGGGGAAGCCCTGGATGTGGCCAGAGGCTTGACGGGAATCCCCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGAAGCCCTGGATGTGGCCAGAGGCTTGACGGGAATCCCCCCTC  828

seq1  ACTTGTTATGCCCCTGAACACTCCTCTGACTTCCCACACTGCATATCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTATGCCCCTGAACACTCCTCTGACTTCCCACACTGCATATCTAT  878

seq1  CTTGCTATTTCTCAGAAGTATTCATGTGTCTGGGGAGCAGCCAAATGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATTTCTCAGAAGTATTCATGTGTCTGGGGAGCAGCCAAATGAGC  928

seq1  AAGCTGCATCCTCCAGGAACTGTATCCTTTGTGACCACAGAAACAATCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATCCTCCAGGAACTGTATCCTTTGTGACCACAGAAACAATCAT  978

seq1  TCCTTGCTCTGCTCCTTCCCAGGCATTCTGAACACAACTCCAGTTTTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTCTGCTCCTTCCCAGGCATTCTGAACACAACTCCAGTTTTATT  1028

seq1  TTTGATACACCTGAAGAATTC  1071
      |||||||||||||||||||||
seq2  TTTGATACACCTGAAGAATTC  1049