BAC Information

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BAC

Clone NameB6Ng01-141G20
Chromosome2 (Build37)
Map Location 9,906,444 - 9,907,502
singlet/doubletsinglet
Overlap geneTaf3
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik
Downstream geneAtp5c1, Kin, Itih2, Itih5, Sfmbt2, LOC100040690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141G20.bB6Ng01-141G20.g
ACCDH939889DH939890
length1,032947
definitionDH939889|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G20, 5' end.DH939890|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctatttgaaaagcatagcctgtgtactggcctatcttcctcaa
aaaaattaggaaaaaaaagaaaaaatatatacatatatatattcataaca
gattcaataattgcagtgaacttccaacattgaaaacattaaaatgcaaa
cattttgaagtcaaatcccttctcatttatcccttttgtgtatgtgatgt
tgtatgctgtatgtgatgaatacatgtgaacgtgtgaacatgcgtgccca
tgtgtacacacatgcgagtcatggtaagtggtgagcctgaagacaggagg
ccagccactcttctcttatttctttttctttctggttttctgagacaggg
tttctctgtgtaaccctgaatgtcctagacttgcttgtagaccaggctgg
ccttgaactcacaaagatccacctgcttcagcctcccaagtgctgggatt
aaaggcatgggccatcagcctggctcttcaactgcatttttagcatgaac
ctcagatgcaacatgaaactcccagacaccttaaagaaacatatacttaa
caccagtgtcagaccaatcaaaattaataacaatttgaataactactcca
tatgtaaattcataagaaaattcacccccctcccacaatgatatgtttta
attgagtcttcaagtaaggaattaatcttgaactgcacacatgaatctca
tttggacaatctctgttctcagcctcaattgttttataacattgtttgct
aaaggaactaagtcacatttgcactcagctttgaggtttttacagatgtt
tattagctacatcagcagacactgcctgctacttccgtgaagtcagactc
ctcagtggttgagagagacttgaggactggcctggcacagggatatggac
atgtgtgctagatacgtctactatagatgacgacaaaggaaactgcacct
tcatcttgagatgcaaactgggtggcgagtttctatttaagagatttaaa
gtaagcctaaatgatggcctgaaagtctaatt
gaattcttcccgagcatgcatgaagccctgggttcagtcaccaataaggg
aggatgggagggtggaaggaaggagggatgatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcgtggatgtggagaaagaggaacactcctccattgttggtga
gattgcaggcttgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggacatagtactaccggaggatccagcaatatctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatggtccactatg
ttcatagcggccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatag
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataaggttttgggtatccaaaacct
aggatacccaagatataagatacaatttgctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgccccttccttagaagtgggaa
caaacaccctttggaagggagttacagagacaaagtttggagctgagatg
aaaaggatggtccatgtagagacttccatatccaggggattcaccccata
atcagcatccaaacgctgacaccattgcattcactagcaagattttataa
aggacccagatgtagctgtctcttgtgagactatgcccgggtcctaacaa
catcagaagtggatgtctcacgtcatctatgtgatggattcacaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9906444_9907502
seq2: B6Ng01-141G20.b_43_1074

seq1  GAATTCTCTATTTGAAAAGCATAGCCTGTGTACTGGCCTATCTTCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTGAAAAGCATAGCCTGTGTACTGGCCTATCTTCCTCAA  50

seq1  AAAAATTAGGAAAAAAAAGAAAAAATATATACATATATATATTCATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGGAAAAAAAAGAAAAAATATATACATATATATATTCATAACA  100

seq1  GATTCAATAATTGCAGTGAACTTCCAACATTGAAAACATTAAAATGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATAATTGCAGTGAACTTCCAACATTGAAAACATTAAAATGCAAA  150

seq1  CATTTTGAAGTCAAATCCCTTCTCATTTATCCCTTTTGTGTATGTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAGTCAAATCCCTTCTCATTTATCCCTTTTGTGTATGTGATGT  200

seq1  TGTATGCTGTATGTGATGAATACATGTGAACGTGTGAACATGCGTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTGTATGTGATGAATACATGTGAACGTGTGAACATGCGTGCCCA  250

seq1  TGTGTACACACATGCGAGTCATGGTAAGTGGTGAGCCTGAAGACAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACACATGCGAGTCATGGTAAGTGGTGAGCCTGAAGACAGGAGG  300

seq1  CCAGCCACTCTTCTCTTATTTCTTTTTCTTTCTGGTTTTCTGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACTCTTCTCTTATTTCTTTTTCTTTCTGGTTTTCTGAGACAGGG  350

seq1  TTTCTCTGTGTAACCCTGAATGTCCTAGACTTGCTTGTAGACCAGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAACCCTGAATGTCCTAGACTTGCTTGTAGACCAGGCTGG  400

seq1  CCTTGAACTCACAGAGATCCACCTGCTTCAGCCTCCCAAGTGCTGGGATT  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCACAAAGATCCACCTGCTTCAGCCTCCCAAGTGCTGGGATT  450

seq1  AAAGGCATGGGCCATCAGCCTGGCTCTTCAACTGCATTTTTAGCATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGGGCCATCAGCCTGGCTCTTCAACTGCATTTTTAGCATGAAC  500

seq1  CTCAGATGCAACATGAAACTCCCAGACACCTTAAAGAAACATATACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGCAACATGAAACTCCCAGACACCTTAAAGAAACATATACTTAA  550

seq1  CACCAGTGTCAGACCAATCAAAATTAATAACAATTTGAATAACTACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTCAGACCAATCAAAATTAATAACAATTTGAATAACTACTCCA  600

seq1  TATGTAAATTCATAAGAAAATTCACCCCCCTCCCACAATGATATGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATTCATAAGAAAATTCACCCCCCTCCCACAATGATATGTTTTA  650

seq1  ATTGAGTCTTCAAGTAAGGAATTAATCTTGAACTGCACACATGAATCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCTTCAAGTAAGGAATTAATCTTGAACTGCACACATGAATCTCA  700

seq1  TTTGGACAATCTCTGTTCTCAGCCTCAATTGTTTTATAACATTTGTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTGGACAATCTCTGTTCTCAGCCTCAATTGTTTTATAACA-TTGTTTGC  749

seq1  TAAAGGAACTAAGTCACATTTGCACTCAGCTTTGAGGTTTTTTACAGATG  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAAGGAACTAAGTCACATTTGCACTCAGCTTTGAGG-TTTTTACAGATG  798

seq1  TTTATTAGGCTACATCAGCAGACACTGCCTGCTACTTACAGTGAAGTCAA  850
      ||||||| ||||||||||||||||||||||||||||| | |||||||| |
seq2  TTTATTA-GCTACATCAGCAGACACTGCCTGCTACTT-CCGTGAAGTC-A  845

seq1  GACTCCTCAGTGGTTGAAGAGAGACTTGAGGACTGGCCCTGGCACAGGGG  900
      |||||||||||||||| ||||||||||||||||||| ||||||||| |||
seq2  GACTCCTCAGTGGTTG-AGAGAGACTTGAGGACTGG-CCTGGCACA-GGG  892

seq1  ATATGGACATGTGTGCTAGGATAAGGTCTACTAAGAGATGACAGACAAAA  950
      |||||||||||||||||| ||| | ||||||| | ||||||| |||||| 
seq2  ATATGGACATGTGTGCTA-GAT-ACGTCTACT-ATAGATGAC-GACAAA-  937

seq1  GGGAAACTGCAGCACTCATCTTTGAAGATGCAAAACTGGGTGGCGAGTTT  1000
       |||||||||| |  |||||||   |||||| ||||||||||||||||||
seq2  -GGAAACTGCA-CCTTCATCTT--GAGATGC-AAACTGGGTGGCGAGTTT  982

seq1  CCTATCTAAAGAGATTTTTAAAAGTAAGCCCAAAACATGATGGCATGAAA  1050
       |||| | |||||||||   |||||||||| ||   |||||||| |||||
seq2  -CTAT-TTAAGAGATTT---AAAGTAAGCCTAA---ATGATGGCCTGAAA  1024

seq1  GGTCTAATT  1059
       ||||||||
seq2  -GTCTAATT  1032