BAC Information

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BAC

Clone NameB6Ng01-141I11
Chromosome2 (Build37)
Map Location 30,424,265 - 30,559,184
singlet/doubletdoublet
Overlap geneCstad
Upstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l
Downstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I11.bB6Ng01-141I11.g
ACCDH939966DH939967
length1,045288
definitionDH939966|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I11, 5' end.DH939967|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,424,265 - 30,425,317)(30,558,897 - 30,559,184)
sequence
gaattcagccactgtcctagtcagacttccatcaggtactggtacagaga
ccagcacaactctgggagtctgtaatccaatctgggaccaatgcattttg
ttagattttaattgggcaccagttgcttacttgacacaagtcctgtatta
ctgtctaggtaggaaagagtgaaggagaaagacactttgcctttcccacc
tctcctcaggaggtgtcaccagagccatccctgcctgagggttatctcct
cccactcctcctcccccctcttccttctcctcctcttcttcttctccctt
ttcctctattttttgtttgtttgtttgttgttgttgttgttgttttgaga
cagggtttctctgtgtagccctggctgtcctggaactcactctgtagacc
aggctggccttgaactcagaaattcgcctgcctctgcctcccaagtgctg
ggattaaaggcgtgcaccaccacgcctggctccttttcctcttcttcctc
ttcttcctcttcttcctcttcctctctgtgctatgaaatgaacccagggc
catggatatgctaaacaagccctttaccctacctcctttatttttgtctt
taaactaggctctccctatatagcccagtctaggctggaattcatggatt
ctcttgcctctgcctaagtgctgggattatagatggaaaccaccccagaa
ggtgtctctgtattgaaaactttgagaatctgaagtgattttaaatttaa
aactcataaaataagagaaaggaaagtaagtcagctcaagaattttatac
tcagcaacaatatcctatcagaacaagtgcacaaaaataaccatttttca
gagtttgttttctttttctctttaaacagaatcacttttttatgaaaatt
tgtatgccacaaggaaggcttcattgtttcatcagtgggatgtcatatta
ctgcttcacccatggaaggtaataaagttgcttccagttaagtattacaa
tataggtcctcctaccagtgaagacttggttttaaactgaaaatg
cccgttgcttgcatagggtcagtttaagactgagcctgactgggcagtgg
tggtgcatgcctttaatcccagcactcaggaggtagaagcaagcagatct
ctatgagttcaaggccagcctggtctatagagttccaggacatccagaac
ttcacaggggaatcctgtgtcaaaaacaaacaaacaaacaaaacccccca
aatcctaaaacattctgccagatgtgggaggggctctgggatgtgggagg
ggctctgggatgtgggaggggctctgggatgtgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30424265_30425317
seq2: B6Ng01-141I11.b_49_1093

seq1  GAATTCAGCCACTGTCCTAGTCAGACTTCCATCAGGTACTGGTACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCACTGTCCTAGTCAGACTTCCATCAGGTACTGGTACAGAGA  50

seq1  CCAGCACAACTCTGGGAGTCTGTAATCCAATCTGGGACCAATGCATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAACTCTGGGAGTCTGTAATCCAATCTGGGACCAATGCATTTTG  100

seq1  TTAGATTTTAATTGGGCACCAGTTGCTTACTTGACACAAGTCCTGTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTAATTGGGCACCAGTTGCTTACTTGACACAAGTCCTGTATTA  150

seq1  CTGTCTAGGTAGGAAAGAGTGAAGGAGAAAGACACTTTGCCTTTCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGGTAGGAAAGAGTGAAGGAGAAAGACACTTTGCCTTTCCCACC  200

seq1  TCTCCTCAGGAGGTGTCACCAGAGCCATCCCTGCCTGAGGGTTATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGGAGGTGTCACCAGAGCCATCCCTGCCTGAGGGTTATCTCCT  250

seq1  CCCACTCCTCCTCCCCCCTCTTCCTTCTCCTCCTCTTCTTCTTCTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTCCTCCCCCCTCTTCCTTCTCCTCCTCTTCTTCTTCTCCCTT  300

seq1  TTCCTCTATTTTTTGTTTGTTTGTTTGTTGTTGTTGTTGTTGTTTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTATTTTTTGTTTGTTTGTTTGTTGTTGTTGTTGTTGTTTTGAGA  350

seq1  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  400

seq1  AGGCTGGCCTTGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTG  450

seq1  GGATTAAAGGCGTGCACCACCACGCCTGGCTCCTTTTCCTCTTCTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGCACCACCACGCCTGGCTCCTTTTCCTCTTCTTCCTC  500

seq1  TTCTTCCTCTTCTTCCTCTTCCTCTCTGTGCTATGAAATGAACCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCTTCTTCCTCTTCCTCTCTGTGCTATGAAATGAACCCAGGGC  550

seq1  CATGGATATGCTAAACAAGCCCTTTACCCTACCTCCTTTATTTTTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATATGCTAAACAAGCCCTTTACCCTACCTCCTTTATTTTTGTCTT  600

seq1  TAAACTAGGCTCTCCCTATATAGCCCAGTCTAGGCTGGAATTCATGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGGCTCTCCCTATATAGCCCAGTCTAGGCTGGAATTCATGGATT  650

seq1  CTCTTGCCTCTGCCTAAGTGCTGGGATTATAGATGGAAACCACCCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTCTGCCTAAGTGCTGGGATTATAGATGGAAACCACCCCAGAA  700

seq1  GGTGTCTCTGTATTG-AAACTTTGAGAATCTGAAGTGATTTTAAATTTAA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCTGTATTGAAAACTTTGAGAATCTGAAGTGATTTTAAATTTAA  750

seq1  AACTCATAAAATAAGAGAAAGGAAAAGTAAGTCAGCTCAAGAATTTTATA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACTCATAAAATAAGAGAAAGG-AAAGTAAGTCAGCTCAAGAATTTTATA  799

seq1  CCCAGCAACAATATCCTATCAGAACAAGTGCAACAAAAATAACCA-TTTT  848
      | ||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CTCAGCAACAATATCCTATCAGAACAAGTGC-ACAAAAATAACCATTTTT  848

seq1  CAGAGTTTGTTTTCTTTTTCCCCTTAAACAGAACCACTTTTTTATGAAAA  898
      |||||||||||||||||||| | |||||||||| ||||||||||||||||
seq2  CAGAGTTTGTTTTCTTTTTCTCTTTAAACAGAATCACTTTTTTATGAAAA  898

seq1  GTTGTATGCCACAAGGAAGGCTCCATTGTTTCATCAGTGGGATGTTCATA  948
       ||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TTTGTATGCCACAAGGAAGGCTTCATTGTTTCATCAGTGGGATG-TCATA  947

seq1  TTTAACTGC-TCACCCATGGGAGGACATTAAAGTTGCTTCCAGTTTAGGT  997
      ||  ||||| |||||||||| |||  | ||||||||||||||||| ||  
seq2  TT--ACTGCTTCACCCATGGAAGG-TAATAAAGTTGCTTCCAGTTAAG--  992

seq1  TATTACAAATATAGTTCCTCTATACAGTGAAGATCTTGTTTTTTAAACTG  1047
      |||||| ||||||| |||||    ||||||||| ||||  ||||||||||
seq2  TATTAC-AATATAGGTCCTCCTACCAGTGAAGA-CTTG-GTTTTAAACTG  1039

seq1  AAAATG  1053
      ||||||
seq2  AAAATG  1045

seq1: chr2_30558897_30559184
seq2: B6Ng01-141I11.g_75_362 (reverse)

seq1  CCTCCCACATCCCAGAGCCCCTCCCACATCCCAGAGCCCCTCCCACATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACATCCCAGAGCCCCTCCCACATCCCAGAGCCCCTCCCACATCC  50

seq1  CAGAGCCCCTCCCACATCTGGCAGAATGTTTTAGGATTTGGGGGGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCCTCCCACATCTGGCAGAATGTTTTAGGATTTGGGGGGTTTTG  100

seq1  TTTGTTTGTTTGTTTTTGACACAGGATTCCCCTGTGAAGTTCTGGATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTTGACACAGGATTCCCCTGTGAAGTTCTGGATGTC  150

seq1  CTGGAACTCTATAGACCAGGCTGGCCTTGAACTCATAGAGATCTGCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCTATAGACCAGGCTGGCCTTGAACTCATAGAGATCTGCTTGC  200

seq1  TTCTACCTCCTGAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCCTGAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCAGT  250

seq1  CAGGCTCAGTCTTAAACTGACCCTATGCAAGCAACGGG  288
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGTCTTAAACTGACCCTATGCAAGCAACGGG  288