BAC Information

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BAC

Clone NameB6Ng01-141I18
Chromosome2 (Build37)
Map Location 145,837,081 - 145,970,457
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I18.bB6Ng01-141I18.g
ACCDH939978DH939979
length1,1161,014
definitionDH939978|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I18, 5' end.DH939979|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,837,081 - 145,838,186)(145,969,448 - 145,970,457)
sequence
gaattccctctggtctcagcacacactgagcctcagactgtaggtggaag
ttttatttcttctgcaaaatctaggagagactctgttcctttgctctgac
aatgtctagaacgcacgtgccctcttcctcttctgggccacaacagtgca
cctccctattcctatctgggctccctacctcccttgtgatttcatcctat
ctgtttgtataagccagaaaaatcttcaattctcaaaatcttcaagttag
tggcatcttcaaagtccccttcccctgaaggagaaatgtcctcaggttcc
agggaaacacacacacacacacacacacacacacacacacacacttcttg
agggccactgtgtgcctcccacagtctctcctgcaggatgtagactggga
gagctttggattagtaacttcattcaaatcttcattcaaagaactgcctg
agcgttccaaaggttcagaaattctagtaccacaaaatcttaacaaaacc
agctttcaagagcgaacattaccatactgatctttacctaatttgttttc
tggcctttgtgtgagactttcgaatatcattaagagggtcttcaaatgga
ccttcccagggtggttgatttcagccgagacagtcaaccacaatcacaga
gacaggccatgtggagacagtgcaaccactaacccactggaacccagtgg
tccccatgggctacctctctctctttcttctaggacatggaaaagaatct
aagcattcctttccttagttgacgaagaagatgttgccagcagcctgagc
tcctctcctcctgttgtctgtggaatcctcccactttccgccctcttcta
cctgggagaccctattgcgttttgtattcagctctttttgtattgatgag
agatacgaaggcaaggcaagtactgatctccattgtttctctgttgcact
aagaagtttctttcgggcacgcttttttctgagatgtgatctttaagcca
ggcctcatatcacattcttctaggtatttaaaacagactcagaacttctt
ggactcaatctagaggattctagtcctataatttggggaggactccaaaa
ggaataaaaaatatct
gaattctgtaaatatgtggggtttttctggtggtaaggtctacaacatct
aaagacatggttttaaaatatctcttctcctatttcttttcactctcaac
ataaaacctgttttcctcttcctgtgggcagttcaaggtgacctgtgaaa
atggtttactcctctcttgactcagaaaactctagaaaatcaggcagatc
aagaggttcatacgcttacatttgcttcagaatacccatgaaactgccca
ggccatcagaggtctgcaaatcctagaagctaccaagtatctgaaggatg
taattttgaaggagttatgtgcaccattctggtggcataataatagagtc
tgtaaatatgcccaaaccaaatagtagggctggacacagaattgatggcc
cccaaagagagcttaattcctggtgtacaaaaatctgaacttaaagtgtt
ggatatagattctgtagtcactgaacatatccaagccaacaaggaaccaa
ggcatgtctttgaacttaaagagctcatggttacattaaccgatacgctg
cttccctctgccacatgaagaggatcaccataaaaagggaacaaattgtt
tctaaagattgtatagaagaaaaagatatacctgaagaaaatgaataaac
agaagtttgggactcaggaatacgttaagcctgaaatacatgcaaaaaaa
aacaaaccctgccttacatatgaaattatcttcttaggggtcaacaagcc
ttagggagtgaaaatgggctatttctcagctgtaaatgggctgaaccaat
ctgtgaagagagcaggctaaggaaggctggaaagacggcttcacggtaaa
ggttgcttgcttctttgcaggtggactgggggttggttttcaggcactca
tatggtgactaacaactgtttacagttccacttcaggtatttctatgccc
ttttccagcattctcatacatgtggtcaccagacttaggcagcacaaccc
tacttcagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145837081_145838186
seq2: B6Ng01-141I18.b_47_1162

seq1  GAATTCCCTCTGGTCTCAGCACACACTGAGCCTCAGACTGTAGGTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGGTCTCAGCACACACTGAGCCTCAGACTGTAGGTGGAAG  50

seq1  TTTTATTTCTTCTGCAAAATCTAGGAGAGACTCTGTTCCTTTGCTCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTTCTGCAAAATCTAGGAGAGACTCTGTTCCTTTGCTCTGAC  100

seq1  AATGTCTAGAACGCACGTGCCCTCTTCCTCTTCTGGGCCACAACAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAGAACGCACGTGCCCTCTTCCTCTTCTGGGCCACAACAGTGCA  150

seq1  CCTCCCTATTCCTATCTGGGCTCCCTACCTCCCTTGTGATTTCATCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTATTCCTATCTGGGCTCCCTACCTCCCTTGTGATTTCATCCTAT  200

seq1  CTGTTTGTATAAGCCAGAAAAATCTTCAATTCTCAAAATCTTCAAGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTATAAGCCAGAAAAATCTTCAATTCTCAAAATCTTCAAGTTAG  250

seq1  TGGCATCTTCAAAGTCCCCTTCCCCTGAAGGAGAAATGTCCTCAGGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTCAAAGTCCCCTTCCCCTGAAGGAGAAATGTCCTCAGGTTCC  300

seq1  AGGGAAACACACACACACACACACACACACACACACACACACACTTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACACACACACACACACACACACACACACACACACACACTTCTTG  350

seq1  AGGGCCACTGTGTGCCTCCCACAGTCTCTCCTGCAGGATGTAGACTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCACTGTGTGCCTCCCACAGTCTCTCCTGCAGGATGTAGACTGGGA  400

seq1  GAGCTTTGGATTAGTAACTTCATTCAAATCTTCATTCAAAGAACTGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGGATTAGTAACTTCATTCAAATCTTCATTCAAAGAACTGCCTG  450

seq1  AGCGTTCCAAAGGTTCAGAAATTCTAGTACCACAAAATCTTAACAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTCCAAAGGTTCAGAAATTCTAGTACCACAAAATCTTAACAAAACC  500

seq1  AGCTTTCAAGAGCGAACATTACCATACTGATCTTTACCTAATTTGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAAGAGCGAACATTACCATACTGATCTTTACCTAATTTGTTTTC  550

seq1  TGGCCTTTGTGTGAGACTTTCGAATATCATTAAGAGGGTCTTCAAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTGTGTGAGACTTTCGAATATCATTAAGAGGGTCTTCAAATGGA  600

seq1  CCTTCCCAGGGTGGTTGATTTCAGCCGAGACAGTCAACCACAATCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGGGTGGTTGATTTCAGCCGAGACAGTCAACCACAATCACAGA  650

seq1  GACAGGCCATGTGGAGACAGTGCAACCACTAACCCACTGGAACCCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCCATGTGGAGACAGTGCAACCACTAACCCACTGGAACCCAGTGG  700

seq1  TCCCCATGGGCTACCTCTCTCTCTTTCTTCTAGGACATGGAAAAGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGGGCTACCTCTCTCTCTTTCTTCTAGGACATGGAAAAGAATCT  750

seq1  AAGCA-TCCTTTCCTTAGTTGACGAAGAAGATGTTGCCAGCAGCCTGAGC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCCTTTCCTTAGTTGACGAAGAAGATGTTGCCAGCAGCCTGAGC  800

seq1  TCCTC-CCTCCTGTTGTCTGTGGAATCCTCCCAC-TTCCGCCC-CCTCTA  846
      ||||| |||||||||||||||||||||||||||| |||||||| | ||||
seq2  TCCTCTCCTCCTGTTGTCTGTGGAATCCTCCCACTTTCCGCCCTCTTCTA  850

seq1  CCTGGGAGACCCTATTGCGTTTTGTATTCAGCTC-TTTTGTATTGATGAG  895
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGGGAGACCCTATTGCGTTTTGTATTCAGCTCTTTTTGTATTGATGAG  900

seq1  AGATACG-AGGCAAGGCAAGTACTGATCTCCAATGTCTCTCTGTTGCACT  944
      ||||||| |||||||||||||||||||||||| ||| |||||||||||||
seq2  AGATACGAAGGCAAGGCAAGTACTGATCTCCATTGTTTCTCTGTTGCACT  950

seq1  AAGAAG-TTCTTCCGGCAACGC-TTTTTCTGAGAATGTGATCTTTAAGCC  992
      |||||| ||||| |||  |||| |||||||||| ||||||||||||||||
seq2  AAGAAGTTTCTTTCGGGCACGCTTTTTTCTGAG-ATGTGATCTTTAAGCC  999

seq1  A-GCCCCATATCACATTCTTCTAGGTACCTTAAAACAGAC-CAGA--CTC  1038
      | ||| |||||||||||||||||||||  ||||||||||| ||||   ||
seq2  AGGCCTCATATCACATTCTTCTAGGTA-TTTAAAACAGACTCAGAACTTC  1048

seq1  CTGGACCCCATCTAGA-GATTCTAGTCCATAAAATTTGGGGAAGACCTAC  1087
       ||||| | ||||||| ||||||||||| || |||||||||| || || |
seq2  TTGGACTCAATCTAGAGGATTCTAGTCC-TATAATTTGGGGAGGA-CTCC  1096

seq1  AAAAGGAAT-AAAAATATCT  1106
      ||||||||| ||||||||||
seq2  AAAAGGAATAAAAAATATCT  1116

seq1: chr2_145969448_145970457
seq2: B6Ng01-141I18.g_68_1081 (reverse)

seq1  TTTTTTCTG-TGTATGGTTGTGCTGCCTTAAGTCTGTGTACCACATGTAT  49
      |||||||||  ||| |||||||||||| ||||||||   |||||||||||
seq2  TTTTTTCTGAAGTAGGGTTGTGCTGCC-TAAGTCTGGTGACCACATGTAT  49

seq1  GTGGATGCTGGAAAAGGGCATAGAATACCCTGAAGTTGGAGTTGTAGACA  99
      | | |||||||||||||||||||||   ||||||| ||||  |||| |||
seq2  GAGAATGCTGGAAAAGGGCATAGAAATACCTGAAG-TGGAACTGTAAACA  98

seq1  GTTGTTAGTCACCATATGGGTG-CTGGAAACCAAACCCCAGT-CACCTGC  147
      |||||||||||||||||| ||| ||| ||||||| ||||||| |||||||
seq2  GTTGTTAGTCACCATATGAGTGCCTGAAAACCAACCCCCAGTCCACCTGC  148

seq1  AAAGTAGCAAGCAACCTTTACCATG-AGCCGTCTTTCCAGCC-TCCTTAG  195
      |||| ||||||||||||||||| || |||||||||||||||| |||||||
seq2  AAAGAAGCAAGCAACCTTTACCGTGAAGCCGTCTTTCCAGCCTTCCTTAG  198

seq1  CCTGCTCTCTTCACAGATTGGTTCAG-CCATTTACAGCTGAGAAATAGCC  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTGCTCTCTTCACAGATTGGTTCAGCCCATTTACAGCTGAGAAATAGCC  248

seq1  CATTTTCACTCCCTAAGGCTTGTTGACCCCTAAGAAGATAATTTCATATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCACTCCCTAAGGCTTGTTGACCCCTAAGAAGATAATTTCATATG  298

seq1  TAAGGCAGGGTTTGTTTTTTTTTGCATGTATTTCAGGCTTAACGTATTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGGGTTTGTTTTTTTTTGCATGTATTTCAGGCTTAACGTATTCC  348

seq1  TGAGTCCCAAACTTCTGTTTATTCATTTTCTTCAGGTATATCTTTTTCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCAAACTTCTGTTTATTCATTTTCTTCAGGTATATCTTTTTCTT  398

seq1  CTATACAATCTTTAGAAACAATTTGTTCCCTTTTTATGGTGATCCTCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAATCTTTAGAAACAATTTGTTCCCTTTTTATGGTGATCCTCTTC  448

seq1  ATGTGGCAGAGGGAAGCAGCGTATCGGTTAATGTAACCATGAGCTCTTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAGAGGGAAGCAGCGTATCGGTTAATGTAACCATGAGCTCTTTA  498

seq1  AGTTCAAAGACATGCCTTGGTTCCTTGTTGGCTTGGATATGTTCAGTGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAAGACATGCCTTGGTTCCTTGTTGGCTTGGATATGTTCAGTGAC  548

seq1  TACAGAATCTATATCCAACACTTTAAGTTCAGATTTTTGTACACCAGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATCTATATCCAACACTTTAAGTTCAGATTTTTGTACACCAGGAA  598

seq1  TTAAGCTCTCTTTGGGGGCCATCAATTCTGTGTCCAGCCCTACTATTTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTCTTTGGGGGCCATCAATTCTGTGTCCAGCCCTACTATTTGG  648

seq1  TTTGGGCATATTTACAGACTCTATTATTATGCCACCAGAATGGTGCACAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCATATTTACAGACTCTATTATTATGCCACCAGAATGGTGCACAT  698

seq1  AACTCCTTCAAAATTACATCCTTCAGATACTTGGTAGCTTCTAGGATTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTCAAAATTACATCCTTCAGATACTTGGTAGCTTCTAGGATTTG  748

seq1  CAGACCTCTGATGGCCTGGGCAGTTTCATGGGTATTCTGAAGCAAATGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCTGATGGCCTGGGCAGTTTCATGGGTATTCTGAAGCAAATGTA  798

seq1  AGCGTATGAACCTCTTGATCTGCCTGATTTTCTAGAGTTTTCTGAGTCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTATGAACCTCTTGATCTGCCTGATTTTCTAGAGTTTTCTGAGTCAA  848

seq1  GAGAGGAGTAAACCATTTTCACAGGTCACCTTGAACTGCCCACAGGAAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGTAAACCATTTTCACAGGTCACCTTGAACTGCCCACAGGAAGA  898

seq1  GGAAAACAGGTTTTATGTTGAGAGTGAAAAGAAATAGGAGAAGAGATATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAGGTTTTATGTTGAGAGTGAAAAGAAATAGGAGAAGAGATATT  948

seq1  TTAAAACCATGTCTTTAGATGTTGTAGACCTTACCACCAGAAAAACCCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCATGTCTTTAGATGTTGTAGACCTTACCACCAGAAAAACCCCA  998

seq1  CATATTTACAGAATTC  1010
      ||||||||||||||||
seq2  CATATTTACAGAATTC  1014