BAC Information

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BAC

Clone NameB6Ng01-141J11
Chromosome2 (Build37)
Map Location 110,601,127 - 110,753,597
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J11.bB6Ng01-141J11.g
ACCDH940012DH940013
length1,0591,102
definitionDH940012|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J11, 5' end.DH940013|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,601,127 - 110,602,206)(110,752,467 - 110,753,597)
sequence
gaattctcttccagtacccttcggtgttttgcttcctgctgccacaatga
gtgaaacaaatgtgaactactttatatttatattctataaacagataaaa
atattaacacatatactctaatagtatgaatgtgtttttcttttattcta
tacatatgaaacactagccagagaatcataagagtactatgtatttcata
ctgtgtaataacttcatttccatgttgccattaaatgtactagtctttta
tgctgttaacaatttctgatagacttaaaggctactcacatctactctac
aactctgtagccacttccacacactgagtttcttcccttgaagaatcatg
tagtgatttcttttctgaggatggtttcctaactgatagcactgtgataa
gaagtaattccaaggctagaaaaatgacgaagatcagtttgctgcttatt
acccaccagcccatctgcagtacctgattaagtccagaggctgatgcttg
taccacattccccagcgtgcccagcgctcatacaacagatgcctgttatt
ctgaggtccatgggttttgatcggaaggctactcttgtaggctccctgcg
agagatacaataacattgattgtagtccaccttcttgccaaagtttgaag
taaataaagactagtgtttacttaagaagataatttatcaacttaatgaa
aacaatagagattatctattcaagctcaccactagaatggtgaatgccat
tgtcaacggaaatatgattgttatgtgaaaataatgttttaagtaatctt
ttcaaataatttggggccatttttatttaagtaaatgtgagtatatattt
taccttttggaattctggaatcctaactgaaaaattactatcaatgacaa
attcttgtaatctttgactgagaaactgaagatcattctgttttagagta
aactagatttacaaattcttacttacaggtgtaagagataaatgtttatt
taagcatgtgtatacttggagctactttgtgtttgattctaggtctgaat
ttctatctg
gaattcagacaaagaagttcaagaaaaaacaaacaaaaaaccaaggaggt
cagacaggtcagtataaataaagagaaacaaaggtgactttgatcagacg
acaaaacaggccaaggacattcattctaaaactgtatgcatgtacaacag
aactctcttcagtgctggtcctcggtccttctgagttggttagtcaagtg
tgaatcttgtttttcttttcactatgttgaaaaatgatataacatgttgt
gggggaaaagattagattttagattgaggatttgtttgtatgaacaaatg
aatagtttttagtgaagtagtatcaatctttgtaccaatcttaatttcct
gcatggatatgtgtatatttacataataaaacgaatgtgtgcttatatgt
acatgtatagtcaaacatatttacctatatatggtttacacacacataaa
agatcatacatatatacagtatatacattcagtaaaaataaagctgttaa
ttatggttaatgatgaataaaagtaacagcagaagaaacattgtagcacc
acttataaaataaactcatttgcactgtgtatttatgtataattcattac
atagcaatactagtatttttgtgggcaacatgatgggtaaactgatgagc
gagttctcctatgataattcttttgatagattgaatataaaatttaaaga
catagataatgatagaattacaataaggtcaaaagtaaacaagatggctg
aaatgggcaccaaatgctgtgagcacagagaggaagaaattatcttcatc
tgaaattttattggaatgctagtataatactttcagccctgatttaaact
gagaagtaggatacattgcaaagccaatgatcggctttctttggcttttc
tggtattcaaacttttctttgtaaagtatacatagttacaaaatttaaat
aaagtaagacaaaatacatgatggattctactgaaattgggagtctagac
attctttcttcagcatgtctagagtgaggaatctgaggtggcattgtcta
gtggcttgccattaatattactagaattcattactagggcccctcagaga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110601127_110602206
seq2: B6Ng01-141J11.b_48_1106

seq1  GAATTCTCTTCCAGTACCCTTCGGTGTTTTGCTTCCTGCTGCCACAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGTACCCTTCGGTGTTTTGCTTCCTGCTGCCACAATGA  50

seq1  GTGAAACAAATGTGAACTACTTTATATTTATATTCTATAAACAGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACAAATGTGAACTACTTTATATTTATATTCTATAAACAGATAAAA  100

seq1  ATATTAACACATATACTCTAATAGTATGAATGTGTTTTTCTTTTATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACACATATACTCTAATAGTATGAATGTGTTTTTCTTTTATTCTA  150

seq1  TACATATGAAACACTAGCCAGAGAATCATAAGAGTACTATGTATTTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGAAACACTAGCCAGAGAATCATAAGAGTACTATGTATTTCATA  200

seq1  CTGTGTAATAACTTCATTTCCATGTTGCCATTAAATGTACTAGTCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATAACTTCATTTCCATGTTGCCATTAAATGTACTAGTCTTTTA  250

seq1  TGCTGTTAACAATTTCTGATAGACTTAAAGGCTACTCACATCTACTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTAACAATTTCTGATAGACTTAAAGGCTACTCACATCTACTCTAC  300

seq1  AACTCTGTAGCCACTTCCACACACTGAGTTTCTTCCCTTGAAGAATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTAGCCACTTCCACACACTGAGTTTCTTCCCTTGAAGAATCATG  350

seq1  TAGTGATTTCTTTTCTGAGGATGGTTTCCTAACTGATAGCACTGTGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTTCTTTTCTGAGGATGGTTTCCTAACTGATAGCACTGTGATAA  400

seq1  GAAGTAATTCCAAGGCTAGAAAAATGACGAAGATCAGTTTGCTGCTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATTCCAAGGCTAGAAAAATGACGAAGATCAGTTTGCTGCTTATT  450

seq1  ACCCACCAGCCCATCTGCAGTACCTGATTAAGTCCAGAGGCTGATGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAGCCCATCTGCAGTACCTGATTAAGTCCAGAGGCTGATGCTTG  500

seq1  TACCACATTCCCCAGCGTGCCCAGCGCTCATACAACAGATGCCTGTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATTCCCCAGCGTGCCCAGCGCTCATACAACAGATGCCTGTTATT  550

seq1  CTGAGGTCCATGGGTTTTGATCGGAAGGCTACTCTTGTAGGCTCCCTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCATGGGTTTTGATCGGAAGGCTACTCTTGTAGGCTCCCTGCG  600

seq1  AGAGATACAATAACATTGATTGTAGTCCACCTTCTTGCCAAAGTTTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACAATAACATTGATTGTAGTCCACCTTCTTGCCAAAGTTTGAAG  650

seq1  TAAATAAAGACTAGTGTTTACTTAAGAAGATAATTTATCAACTTAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGACTAGTGTTTACTTAAGAAGATAATTTATCAACTTAATGAA  700

seq1  AACAATAGAGATTATCTATTCAAGCTCACCACTAGAATGGTGAATGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAGATTATCTATTCAAGCTCACCACTAGAATGGTGAATGCCAT  750

seq1  TGTCAACGGAAATATGATTGTTATGTGAAAATAATGTTTTAAGTAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACGGAAATATGATTGTTATGTGAAAATAATGTTTTAAGTAATCTT  800

seq1  TTCAAATAATTT-GGGCCATTTTTATTTAAGTAAATGTGAGTATATATTT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAATTTGGGGCCATTTTTATTTAAGTAAATGTGAGTATATATTT  850

seq1  TACCTTTTGGAATTCTGGAATCCTAACTGAAAAATTACTATCAATGACAA  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACCTTTTGGAATTCTGGAATCCTAACTGAAAAATTACTATCAATGAC-A  899

seq1  AATTCTTGTAATCTTTGACTGAGAAACTGAAGATCATTCTGTTTTAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  AATTCTTGTAATCTTTGACTGAGAAACTGAAGATCATTCTGTTTTA--GA  947

seq1  GTAAACTAGATTTACAAAATTTTCTTTTACTTACAGGTGTAAAGAGAATA  999
      ||||||||||||||||||   |||  |||||||||||||| ||||| |||
seq2  GTAAACTAGATTTACAAA---TTC--TTACTTACAGGTGT-AAGAG-ATA  990

seq1  AATGTTTATTTTAAAGCATGGTGTTATAACCTTTGGAGCTACCTCTGTGT  1049
      |||||||||||  |||||| ||| ||||    ||||||||| || |||||
seq2  AATGTTTATTT--AAGCAT-GTG-TATA---CTTGGAGCTA-CTTTGTGT  1032

seq1  TTGATTCTAGGGTTCTGAAATTTTCTATCTG  1080
      |||||||||||  ||||||  ||||||||||
seq2  TTGATTCTAGG--TCTGAA--TTTCTATCTG  1059

seq1: chr2_110752467_110753597
seq2: B6Ng01-141J11.g_69_1170 (reverse)

seq1  TCTCTCTTGAGAGGCCCTAAGTAATTGAATTCTAAGTAAATATTAATGAC  50
      |||||| |||| |||||| ||||| |||||||| ||| |||||||||| |
seq2  TCTCTC-TGAGGGGCCCT-AGTAA-TGAATTCT-AGT-AATATTAATGGC  45

seq1  AAGACAACTAGACATGTGCACCTCAGATTTCCTCACTTCTAGACAATTGC  100
      ||| | ||||||||    ||||||||| |||||||| ||||||||  |||
seq2  AAG-CCACTAGACAATGCCACCTCAGA-TTCCTCAC-TCTAGACA--TGC  90

seq1  TGGAAGAAAAGATGGTTCTAGACCTCCCAAATTTTCAGTAGAATCCATCA  150
      | |||||||  |||  |||||| |||||||  ||||||||||||||||||
seq2  T-GAAGAAAGAATG--TCTAGA-CTCCCAA--TTTCAGTAGAATCCATCA  134

seq1  TTGTATTTTTGTCCTTACTTTATTTTAAATTTTTGTAACTAATGTATAAC  200
       |||| |||||| ||||||||||||  || |||||||||| |||||| ||
seq2  -TGTA-TTTTGT-CTTACTTTATTT--AAATTTTGTAACT-ATGTAT-AC  177

seq1  TTTACAAAGAAAAAGTTTTGAATACCAAGAAAAAGCCAAAGAAAGCCGAT  250
      |||||||||||||   |||||||||||   ||||||||||||||||||||
seq2  TTTACAAAGAAAA--GTTTGAATACCA--GAAAAGCCAAAGAAAGCCGAT  223

seq1  CATTTGGCTTTGCAATGTATCCTACTTCTCAGTTTTACATCAGGGCTGAA  300
      || ||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CA-TTGGCTTTGCAATGTATCCTACTTCTCAG-TTTAAATCAGGGCTGAA  271

seq1  AGTATTATACTAGCATTCCAATAAAATTTCAGATGAAGATAATTTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATACTAGCATTCCAATAAAATTTCAGATGAAGATAATTTCTTCC  321

seq1  TCTCTGTGCTCACAGCATTTGGTGCCCATTTCAGCCATCTTGTTTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGCTCACAGCATTTGGTGCCCATTTCAGCCATCTTGTTTACTTT  371

seq1  TGACCTTATTGTAATTCTATCATTATCTATGTCTTTAAATTTTATATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTATTGTAATTCTATCATTATCTATGTCTTTAAATTTTATATTCA  421

seq1  ATCTATCAAAAGAATTATCATAGGAGAACTCGCTCATCAGTTTACCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAAAAGAATTATCATAGGAGAACTCGCTCATCAGTTTACCCATC  471

seq1  ATGTTGCCCACAAAAATACTAGTATTGCTATGTAATGAATTATACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCCACAAAAATACTAGTATTGCTATGTAATGAATTATACATAAA  521

seq1  TACACAGTGCAAATGAGTTTATTTTATAAGTGGTGCTACAATGTTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGCAAATGAGTTTATTTTATAAGTGGTGCTACAATGTTTCTTC  571

seq1  TGCTGTTACTTTTATTCATCATTAACCATAATTAACAGCTTTATTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTACTTTTATTCATCATTAACCATAATTAACAGCTTTATTTTTAC  621

seq1  TGAATGTATATACTGTATATATGTATGATCTTTTATGTGTGTGTAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATATACTGTATATATGTATGATCTTTTATGTGTGTGTAAACCA  671

seq1  TATATAGGTAAATATGTTTGACTATACATGTACATATAAGCACACATTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGTAAATATGTTTGACTATACATGTACATATAAGCACACATTCG  721

seq1  TTTTATTATGTAAATATACACATATCCATGCAGGAAATTAAGATTGGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATGTAAATATACACATATCCATGCAGGAAATTAAGATTGGTAC  771

seq1  AAAGATTGATACTACTTCACTAAAAACTATTCATTTGTTCATACAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGATACTACTTCACTAAAAACTATTCATTTGTTCATACAAACAA  821

seq1  ATCCTCAATCTAAAATCTAATCTTTTCCCCCACAACATGTTATATCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAATCTAAAATCTAATCTTTTCCCCCACAACATGTTATATCATTT  871

seq1  TTCAACATAGTGAAAAGAAAAACAAGATTCACACTTGACTAACCAACTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATAGTGAAAAGAAAAACAAGATTCACACTTGACTAACCAACTCA  921

seq1  GAAGGACCGAGGACCAGCACTGAAGAGAGTTCTGTTGTACATGCATACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACCGAGGACCAGCACTGAAGAGAGTTCTGTTGTACATGCATACAG  971

seq1  TTTTAGAATGAATGTCCTTGGCCTGTTTTGTCGTCTGATCAAAGTCACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATGAATGTCCTTGGCCTGTTTTGTCGTCTGATCAAAGTCACCT  1021

seq1  TTGTTTCTCTTTATTTATACTGACCTGTCTGACCTCCTTGGTTTTTTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCTTTATTTATACTGACCTGTCTGACCTCCTTGGTTTTTTGTT  1071

seq1  TGTTTTTTCTTGAACTTCTTTGTCTGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  TGTTTTTTCTTGAACTTCTTTGTCTGAATTC  1102