BAC Information

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BAC

Clone NameB6Ng01-141J17
Chromosome2 (Build37)
Map Location 76,687,884 - 76,866,340
singlet/doubletdoublet
Overlap geneTtn
Upstream geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993, LOC667920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J17.bB6Ng01-141J17.g
ACCDH940024DH940025
length1,1601,104
definitionDH940024|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J17, 5' end.DH940025|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,687,884 - 76,689,068)(76,865,203 - 76,866,340)
sequence
gaattcaaacaaaagtattctatttgagaatatcataggcctggggcaat
gcacagccactggatacaagactatagagagagtttgaagtcatgttaga
gctgatgctagagaccagtagtgtgagaggcaggtaaaaggctccgttct
aggaagaggtggttatacctttggcgaccggttcagtcacctgctgcttt
tcacgtttggtaattgaaatctgtattttttcttcaacaactttctttgg
ttcttcgggagctttaaagatattgattatggaagaatatcacaatgaat
cccacaaacatcatagaataaatatcaacaaagcacaaagacctggcatt
aagaaatggaaccagacaatataattagcaacaacagagagcagaagaca
tggtggtgggtcaaggtcgacacggtcacagcacagaggtgacgacactg
cttggaacagttactgctctatcatgtacctttgggtggcagaggtttga
gtttcttttgaatgggcaggggtgctttttcttcagggacagctttcttt
agcactttaaaagaccaatagtaagagatttacaaacctgaactagactc
ttaagggtgagaacaaaatcttaagacatatacaatacaacagtcccaaa
cacacaatttatacacatccactacaacacatatccacagtggacagatg
gggaaaacaaaagactccatcacggctaatgttctcactctaccttttgg
tgggggagccttgggtttagcaggcaccggttcttgggcaggttcactgg
gacaggcttcttgggttctttaaaagcacaaagtgtttaatgttagactg
gaaggcacaagtcaagaaatactcattaggatactgatcctctatgttcg
cagtgcaaccacaatctctagaataaaattagagtgagagaataggtccc
gagagctgtagcaagctatgtctgatttccttgtggccattccttcagta
gcatgggagctcacagattctcatttcacttaagatagcacatgtgacac
aaagttttcattctgggacatgtgtttaggcttcatgaaacatgcgagat
ctctctcaagagtaacaaaactctttaagaatggaaagggtagcatcctt
cacatttctg
gaattctgttctttggatgatagttctttggcccatatctaaatttcatt
catatgtatatatatatcattagaaaacttgttcttgtagactaatagca
gtgtttgttgattatactaaattttgagtattatctacccaatgtttcta
ttctttttagtgagcaaataattttgctgcttgctcttaaaagtatacaa
cagtgtcttaagaactgtattttaggcaaatctaggaaggcaagagaatc
aaagctatgtctatacttttgccttctaacttttcttgtgtgtattcttt
aattatacttttaaaatatgtgccctggtacacatgaaaatatatatgac
tgtgtgctgatattttctttaatatgacttggaaagtttaaagactatat
gaacataaactctgagaaaatcaaaacctgaagcatccttggtcagtgtg
atgaacttcaaaaggacacatacgtctcttgactctgctttcttccattt
gaatatagtgtaacttttggtatgaagatgcaagtgccaccgttgtgaga
gttgggaagtattccatggagtgccaaacaagggaagctgtggacatcct
ccacaggcagttcaataagtttattactccctcggtgccccagcaagaag
aaaggattcaggaggtcattgaccttgctcagcgcttatatggtgagctc
atgtgtgatagtgatttgccaatgaacaaatctgttctgaatctgatcca
gcaggaaacagatcaaagccctcactatcctcacctaggctgagaaaagt
ctgttctacagccagcagaagtaacagtagggaataactgctctactgtt
cttccacagtaggagatgaagcttgttttaaactctctggtatcagccct
tcttccctagtactctgtagtgatcctttctattctagaacagacacact
ctataagacacagagtgtaatgtccctaagtgattctgtgagcataagaa
gattcgtgatgctgatcaaacttccctaagattcatcgtctcgtcatgaa
atggatttgatggaaaagactaagaaacttcccggctccactcacttgaa
acac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76687884_76689068
seq2: B6Ng01-141J17.b_43_1202

seq1  GAATTCAAACAAAAGTATTCTATTTGAGAATATCATAGGCCTGGGGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAAAGTATTCTATTTGAGAATATCATAGGCCTGGGGCAAT  50

seq1  GCACAGCCACTGGATACAAGACTATAGAGAGAGTTTGAAGTCATGTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCACTGGATACAAGACTATAGAGAGAGTTTGAAGTCATGTTAGA  100

seq1  GCTGATGCTAGAGACCAGTAGTGTGAGAGGCAGGTAAAAGGCTCCGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCTAGAGACCAGTAGTGTGAGAGGCAGGTAAAAGGCTCCGTTCT  150

seq1  AGGAAGAGGTGGTTATACCTTTGGCGACCGGTTCAGTCACCTGCTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGTGGTTATACCTTTGGCGACCGGTTCAGTCACCTGCTGCTTT  200

seq1  TCACGTTTGGTAATTGAAATCTGTATTTTTTCTTCAACAACTTTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTTGGTAATTGAAATCTGTATTTTTTCTTCAACAACTTTCTTTGG  250

seq1  TTCTTCGGGAGCTTTAAAGATATTGATTATGGAAGAATATCACAATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGGGAGCTTTAAAGATATTGATTATGGAAGAATATCACAATGAAT  300

seq1  CCCACAAACATCATAGAATAAATATCAACAAAGCACAAAGACCTGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAACATCATAGAATAAATATCAACAAAGCACAAAGACCTGGCATT  350

seq1  AAGAAATGGAACCAGACAATATAATTAGCAACAACAGAGAGCAGAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGAACCAGACAATATAATTAGCAACAACAGAGAGCAGAAGACA  400

seq1  TGGTGGTGGGTCAAGGTCGACACGGTCACAGCACAGAGGTGACGACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGGTCAAGGTCGACACGGTCACAGCACAGAGGTGACGACACTG  450

seq1  CTTGGAACAGTTACTGCTCTATCATGTACCTTTGGGTGGCAGAGGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACAGTTACTGCTCTATCATGTACCTTTGGGTGGCAGAGGTTTGA  500

seq1  GTTTCTTTTGAATGGGCAGGGGTGCTTTTTCTTCAGGGACAGCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTGAATGGGCAGGGGTGCTTTTTCTTCAGGGACAGCTTTCTTT  550

seq1  AGCACTTTAAAAGACCAATAGTAAGAGATTTACAAACCTGAACTAGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTAAAAGACCAATAGTAAGAGATTTACAAACCTGAACTAGACTC  600

seq1  TTAAGGGTGAGAACAAAATCTTAAGACATATACAATACAACAGTCCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTGAGAACAAAATCTTAAGACATATACAATACAACAGTCCCAAA  650

seq1  CACACAATTTATACACATCCACTACAACACATATCCACAGTGGACAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATTTATACACATCCACTACAACACATATCCACAGTGGACAGATG  700

seq1  GGGAAAACAAAAGACTCCATCACGGCTAATGTTCTCACTCTACCTTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACAAAAGACTCCATCACGGCTAATGTTCTCACTCTACCTTTTGG  750

seq1  TGGGGGAGCCTTGGGTTTAGCAGGCACCGGTTCTTGGGCAGGTTTCACTG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGGGAGCCTTGGGTTTAGCAGGCACCGGTTCTTGGGCAGG-TTCACTG  799

seq1  GGACAGGCTTCTTGGGTTCTTTAAAAGCACAAAGTGTTTAATGTTAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTTCTTGGGTTCTTTAAAAGCACAAAGTGTTTAATGTTAGACT  849

seq1  GGAAGGCACAAGTCAAGAAATACTCATTAGGATAACTGATCCTCTATGTT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAAGGCACAAGTCAAGAAATACTCATTAGGAT-ACTGATCCTCTATGTT  898

seq1  CGCAGTGCAACCACAATCTCTAGAATAAAAATTAGAGGTGAGAAGAATAG  950
      |||||||||||||||||||||||||| ||||||||| ||||| |||||||
seq2  CGCAGTGCAACCACAATCTCTAGAAT-AAAATTAGA-GTGAG-AGAATAG  945

seq1  GTCCCGAGAGCTGTAAGCAAGCTATGTCTGATTTCCTTGTGGCCATTCCT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  GTCCCGAGAGCTGT-AGCAAGCTATGTCTGATTTCCTTGTGGCCATTCC-  993

seq1  TTCAGTTAGGCCATGGGAAGGCTCACAGATTCTCATTTCACTTAAGATAG  1050
      ||||| |||  |||||||  ||||||||||||||||||||||||||||||
seq2  TTCAG-TAG--CATGGGA--GCTCACAGATTCTCATTTCACTTAAGATAG  1038

seq1  GCAACATGTGACACAAAGTTTTCTATCTTGGACATTGGTGTTTAAGGGCC  1100
         ||||||||||||||||||||  ||| ||||||  |||||||  ||| 
seq2  --CACATGTGACACAAAGTTTTCATTCTGGGACAT--GTGTTTA--GGCT  1082

seq1  TCAATGAAACCATGC-AGAATCCTCTCAAAGAAGTAAACAAAAACTC-TT  1148
      || |||||| ||||| |||   |||||||   |||||   ||||||| ||
seq2  TC-ATGAAA-CATGCGAGATCTCTCTCAA--GAGTAA--CAAAACTCTTT  1126

seq1  AAGAAGTGAGAGGGTATGGATTCATTTCACATTTCTG  1185
      |||||  || |||||| | || |  ||||||||||||
seq2  AAGAATGGAAAGGGTA-GCATCC--TTCACATTTCTG  1160

seq1: chr2_76865203_76866340
seq2: B6Ng01-141J17.g_67_1170 (reverse)

seq1  GTGTTTACAAGTGAGTGGAAGACGCGGGAGAGTTCTCTAGTCATTTCTCC  50
      |||||| ||||||||||||    || ||  ||||   ||||| ||||   
seq2  GTGTTT-CAAGTGAGTGGA----GCCGGGAAGTTTCTTAGTCTTTTC---  42

seq1  AATCCACAAATCAAATTTCATGGGAACGAGACGATGGAAATCCTTAGGGG  100
         |  ||||||  ||||||||   |||||||||||  ||| |||| |||
seq2  ---CATCAAATC-CATTTCATG---ACGAGACGATG--AAT-CTTA-GGG  81

seq1  AAGTTTTGAAACCAGCATCACGGAATCTTCTTATGCTCACAGAATCACTT  150
      ||||||    | ||||||||| ||||||||||||||||||||||||||||
seq2  AAGTTT---GATCAGCATCAC-GAATCTTCTTATGCTCACAGAATCACTT  127

seq1  AGGGGACATTACACTCTGTGTCTTTATAGAGTGTGGTTCTGGTTCTAAGA  200
      | |||||||||||||||||||| ||||||||||||  ||| ||||| |||
seq2  A-GGGACATTACACTCTGTGTC-TTATAGAGTGTG--TCT-GTTCT-AGA  171

seq1  ATAGAAAGGATCCACTACAGAGTTACTAGGGAAGAAGGGCTGATACCAGA  250
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  ATAGAAAGGAT-CACTACAGAG-TACTAGGGAAGAAGGGCTGATACCAGA  219

seq1  GAGTTTAAAACCAAGCTTCATCTCCTACTGTGGGAAGAACAGTAGGGCAG  300
      |||||||||| |||||||||||||||||||| ||||||||||||| ||||
seq2  GAGTTTAAAA-CAAGCTTCATCTCCTACTGT-GGAAGAACAGTAGAGCAG  267

seq1  TTATTCCCTACTGCTTACTTCTGCTGGCTGTAGAACAGACTTTTCTCAGC  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCTACTG-TTACTTCTGCTGGCTGTAGAACAGACTTTTCTCAGC  316

seq1  CTAGGTGGGGATAGTGAGGGCTTTGATCTGTTTCCTGCTGGATCAGATTC  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAGGATAGTGAGGGCTTTGATCTGTTTCCTGCTGGATCAGATTC  366

seq1  AGAACAGATTTGTTCATTGGCAAATCACTATCACACATGAGCTCACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATTTGTTCATTGGCAAATCACTATCACACATGAGCTCACCATA  416

seq1  TAAGCGCTGAGCAAGGTCAATGACCTCCTGAATCCTTTCTTCTTGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGCTGAGCAAGGTCAATGACCTCCTGAATCCTTTCTTCTTGCTGGG  466

seq1  GCACCGAGGGAGTAATAAACTTATTGAACTGCCTGTGGAGGATGTCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGAGGGAGTAATAAACTTATTGAACTGCCTGTGGAGGATGTCCACA  516

seq1  GCTTCCCTTGTTTGGCACTCCATGGAATACTTCCCAACTCTCACAACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTTGTTTGGCACTCCATGGAATACTTCCCAACTCTCACAACGGT  566

seq1  GGCACTTGCATCTTCATACCAAAAGTTACACTATATTCAAATGGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGCATCTTCATACCAAAAGTTACACTATATTCAAATGGAAGAAA  616

seq1  GCAGAGTCAAGAGACGTATGTGTCCTTTTGAAGTTCATCACACTGACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCAAGAGACGTATGTGTCCTTTTGAAGTTCATCACACTGACCAA  666

seq1  GGATGCTTCAGGTTTTGATTTTCTCAGAGTTTATGTTCATATAGTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTCAGGTTTTGATTTTCTCAGAGTTTATGTTCATATAGTCTTTA  716

seq1  AACTTTCCAAGTCATATTAAAGAAAATATCAGCACACAGTCATATATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCAAGTCATATTAAAGAAAATATCAGCACACAGTCATATATATT  766

seq1  TTCATGTGTACCAGGGCACATATTTTAAAAGTATAATTAAAGAATACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTACCAGGGCACATATTTTAAAAGTATAATTAAAGAATACACA  816

seq1  CAAGAAAAGTTAGAAGGCAAAAGTATAGACATAGCTTTGATTCTCTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGTTAGAAGGCAAAAGTATAGACATAGCTTTGATTCTCTTGCC  866

seq1  TTCCTAGATTTGCCTAAAATACAGTTCTTAAGACACTGTTGTATACTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGATTTGCCTAAAATACAGTTCTTAAGACACTGTTGTATACTTTT  916

seq1  AAGAGCAAGCAGCAAAATTATTTGCTCACTAAAAAGAATAGAAACATTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAGCAGCAAAATTATTTGCTCACTAAAAAGAATAGAAACATTGG  966

seq1  GTAGATAATACTCAAAATTTAGTATAATCAACAAACACTGCTATTAGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAATACTCAAAATTTAGTATAATCAACAAACACTGCTATTAGTCT  1016

seq1  ACAAGAACAAGTTTTCTAATGATATATATATACATATGAATGAAATTTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACAAGTTTTCTAATGATATATATATACATATGAATGAAATTTAG  1066

seq1  ATATGGGCCAAAGAACTATCATCCAAAGAACAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCCAAAGAACTATCATCCAAAGAACAGAATTC  1104