BAC Information

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BAC

Clone NameB6Ng01-141K04
Chromosome2 (Build37)
Map Location 114,932,509 - 115,062,582
singlet/doubletdoublet
Overlap genenone
Upstream geneAqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141K04.bB6Ng01-141K04.g
ACCDH940042DH940043
length4091,029
definitionDH940042|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K04, 5' end.DH940043|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,932,509 - 114,932,923)(115,061,555 - 115,062,582)
sequence
tggtaatctcgctctctgtcactcttagtaacacatttgaagtaaaaaag
aacgttgcagaggtttgtcattagcctctccaactaccctgactcctgaa
agtgtgggcaggagagagatctgttgctccaagtgactggcagaattctc
acagaggtttattttctcctgcctggttctcttctctgctgctttactgc
ccaggcactgggcttcatttgtttaagctgtccccactgctaatccaacc
tctgtagtctctccatgggtgctccctcagatccacagttcataaagcaa
gaagcctctttccaagccaaatatccttaggtgtctcttgctttcagttt
taaattttcattctctctctctctctctctctctctctctctctctctct
ctctctctc
gaattctgtgaattaagtaggaagtctatcttgttaccatattttgagcc
tactaaattatgttaccttgtagcatatgtacttctgcatatttcaaatt
tctaagcaataaaaaaggactctacagagatggcatttattaaaacgata
ttggaacatactaatctgacttatttacaaatgttttaggttggactaga
gggatggatcagtgagtaagatgcttgcctcacatgtctgaggaccacaa
ttcaagtcttcagtacccaggaaaatgccaggaaggcattgcagttcact
cctaatcccagtgtttggaaggtagacacaagggctcctctgaggagcct
ggatagctagagtagctgaataaattgtcctgggttcaagtagaagacct
tacctcaatatataaggtagagaaaattgagggagatattcagatgtcaa
cctctggtacacacagacacacagacacacacacacacacactcgcacat
gcatgaatacatgcatgcatgtatacacacacacaagtcatgtattggga
tattcactagctttgaagcactgagcatgataacaaaattagccatctta
gaaatctactggatctacctaaaataactttcattttatgatagttacat
aatgttctcctagttaattatgactatcttttctggttagcatagtagtc
cttaatatttttccactttctttttggcacaagaaattggtggaatatat
taaatacacggaacagatatgggtatttgtaggacattcagtgtacagag
gcacaaagcctctaaaacaatagagctaaagccaattggtatgagtagca
ttgatatggtcaccaaacatatgtagccttgtcagccatttcttaggagc
ttgaaatccaaaggtatcttaggcttgaaaaagatggggagttgcaaatt
gtctcagtaggtaaaaggtgcttatatgtatcaagaaatcggagttgatc
taaactcaggtaatgggtgaaaggagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114932509_114932923
seq2: B6Ng01-141K04.b_48_462

seq1  GAATTCTGGTAATCTCGCTCTCTGTCACTCTTAGTAACACATTTGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTAATCTCGCTCTCTGTCACTCTTAGTAACACATTTGAAGTA  50

seq1  AAAAAGAACGTTGCAGAGGTTTGTCATTAGCCTCTCCAACTACCCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACGTTGCAGAGGTTTGTCATTAGCCTCTCCAACTACCCTGACT  100

seq1  CCTGAAAGTGTGGGCAGGAGAGAGATCTGTTGCTCCAAGTGACTGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTGTGGGCAGGAGAGAGATCTGTTGCTCCAAGTGACTGGCAGA  150

seq1  ATTCTCACAGAGGTTTATTTTCTCCTGCCTGGTTCTCTTCTCTGCTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACAGAGGTTTATTTTCTCCTGCCTGGTTCTCTTCTCTGCTGCTT  200

seq1  TACTGCCCAGGCACTGGGCTTCATTTGTTTAAGCTGTCCCCACTGCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCAGGCACTGGGCTTCATTTGTTTAAGCTGTCCCCACTGCTAAT  250

seq1  CCAACCTCTGTAGTCTCTCCATGGGTGCTCCCTCAGATCCACAGTTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCTGTAGTCTCTCCATGGGTGCTCCCTCAGATCCACAGTTCATA  300

seq1  AAGCAAGAAGCCTCTTTCCAAGCCAAATATCCTTAGGTGTCTCTTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAAGCCTCTTTCCAAGCCAAATATCCTTAGGTGTCTCTTGCTTT  350

seq1  CAGTTTTAAATTTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAAATTTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTC  415
      |||||||||||||||
seq2  CTCTCTCTCTCTCTC  415

seq1: chr2_115061555_115062582
seq2: B6Ng01-141K04.g_69_1097 (reverse)

seq1  ACTCTCCTTCCA-CCATTACCTGAGTTTTAGATCAAACTCCGGTTTCTAT  49
      ||||||||| || |||||||||||| |||||||| ||||||| ||||| |
seq2  ACTCTCCTTTCACCCATTACCTGAG-TTTAGATC-AACTCCGATTTCT-T  47

seq1  GATTACATGGTAAGCA-CTTTTACCTACTGAGACAATTTGCAACTCCCAC  98
      || |||||  |||||| |||||||||||||||||||||||||||||||  
seq2  GA-TACAT-ATAAGCACCTTTTACCTACTGAGACAATTTGCAACTCCCCA  95

seq1  TC-TTTTCAAGCCTAGATTACCTTTGGAATTTCAAGCTCCTAAG-AATGG  146
      || ||||||||||||   ||||||||| |||||||||||||||| |||||
seq2  TCTTTTTCAAGCCTAAGATACCTTTGG-ATTTCAAGCTCCTAAGAAATGG  144

seq1  CTGACAAGGCTACATATGGTCTTGGTGACCATATCAATGCTACTCATACC  196
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  CTGACAAGGCTACATATG--TTTGGTGACCATATCAATGCTACTCATACC  192

seq1  AATTGGCTTTAGCTCTATTGTTTTAGAGGCTTTGTGCCTCTGTACACTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTTTAGCTCTATTGTTTTAGAGGCTTTGTGCCTCTGTACACTGA  242

seq1  GTGTCCTACAAATA-CCATATCTGTTCCGTGTATTTAATATATTCCACCA  295
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGTCCTACAAATACCCATATCTGTTCCGTGTATTTAATATATTCCACCA  292

seq1  ATTTCTTGTGCCAAAAAG-AAGTGG-AAAATATTAAGGACTACTATGCTA  343
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  ATTTCTTGTGCCAAAAAGAAAGTGGAAAAATATTAAGGACTACTATGCTA  342

seq1  ACCAG-AAAGATAGTCATAATTAACTAGGGGAACATTATGTAACTATCAT  392
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCAGAAAAGATAGTCATAATTAACTAGGAGAACATTATGTAACTATCAT  392

seq1  AAAATGAAAGTTA-TTTAGGTAGATCCAGTAGATTTCTAAGATGGCTAAT  441
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGTTATTTTAGGTAGATCCAGTAGATTTCTAAGATGGCTAAT  442

seq1  TTTGTTATCATGCTCAGTGCTTCAAAGCTAGTGAATATCCCAATACATGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATCATGCTCAGTGCTTCAAAGCTAGTGAATATCCCAATACATGA  492

seq1  CTTGTGTGTGTGTATACATGCATGCATGTATTCATGCATGTGCGAGTGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTGTGTATACATGCATGCATGTATTCATGCATGTGCGAGTGTG  542

seq1  TGTGTGTGTGTGTCTGTGTGTCTGTGTGTACCAGAGGTTGACATCTGAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTCTGTGTGTCTGTGTGTACCAGAGGTTGACATCTGAAT  592

seq1  ATCTCCCTCAATTTTCTCTACCTTATATATTGAGGTAAGGTCTTCTACTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTCAATTTTCTCTACCTTATATATTGAGGTAAGGTCTTCTACTT  642

seq1  GAACCCAGGACAATTTATTCAGCTACTCTAGCTATCCAGGCTCCTCAGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGGACAATTTATTCAGCTACTCTAGCTATCCAGGCTCCTCAGAG  692

seq1  GAGCCCTTGTGTCTACCTTCCAAACACTGGGATTAGGAGTGAACTGCAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTGTGTCTACCTTCCAAACACTGGGATTAGGAGTGAACTGCAAT  742

seq1  GCCTTCCTGGCATTTTCCTGGGTACTGAAGACTTGAATTGTGGTCCTCAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTGGCATTTTCCTGGGTACTGAAGACTTGAATTGTGGTCCTCAG  792

seq1  ACATGTGAGGCAAGCATCTTACTCACTGATCCATCCCTCTAGTCCAACCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAGGCAAGCATCTTACTCACTGATCCATCCCTCTAGTCCAACCT  842

seq1  AAAACATTTGTAAATAAGTCAGATTAGTATGTTCCAATATCGTTTTAATA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGTAAATAAGTCAGATTAGTATGTTCCAATATCGTTTTAATA  892

seq1  AATGCCATCTCTGTAGAGTCCTTTTTTATTGCTTAGAAATTTGAAATATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCTCTGTAGAGTCCTTTTTTATTGCTTAGAAATTTGAAATATG  942

seq1  CAGAAGTACATATGCTACAAGGTAACATAATTTAGTAGGCTCAAAATATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACATATGCTACAAGGTAACATAATTTAGTAGGCTCAAAATATG  992

seq1  GTAACAAGATAGACTTCCTACTTAATTCACAGAATTC  1028
      |||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGATAGACTTCCTACTTAATTCACAGAATTC  1029