BAC Information

Click to search

BAC

Clone NameB6Ng01-141O05
Chromosome2 (Build37)
Map Location 139,330,141 - 139,330,533
singlet/doubletsinglet
Overlap geneC130053K05Rik
Upstream geneLOC628103
Downstream geneLOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141O05.bB6Ng01-141O05.g
ACCDH940226DH940227
length1,2451,029
definitionDH940226|Mus musculus domesticus DNA, BAC clone: B6Ng01-141O05, 5' end.DH940227|Mus musculus domesticus DNA, BAC clone: B6Ng01-141O05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctaatgtgctttaaatcaggcctgcaagcttgcttggatattt
ctctatcttggaaatgggggacctaagcatgttgaatttctgcagaataa
aatactttgtgtttatatactatttgattctggggaatcattctccagcc
aatcatggagccttacagaagcagtacctgtaacttccctgcttctccca
acagtctctttatggtttagatttctctaatacaagttatttgaatcctg
tacattctctgctgccaatgaaaacacgagaccctccagccagggaagca
gacagaataagtaccaagcttcaccttttctttcctcttctcttctaaat
ctaaacccaagcctcacccctaactctgaggcagaccacctactgaggtc
tcttctctgtccacacctccaaccaatcaggcaaatctttctctccacct
tggctccctactcagagtgttatcaagggccctaaaacagaaagcatgcc
ctgggtcctccaggaaagcctgccagagaagcagacagtactgcaaagca
ggtaggtgagctttagatcttcattgtccctcctctcctccatatctaac
cccacaggctcatccatagctatgtagtagactacctgttgtggcctctc
cacacactctgtccccattcccatgtgactagacagatcctaatgcaaaa
ccttcctttcctaccttctgtggacccattcaacccccacaccagcacaa
atgctaaatgtgagttcccagttcctaggaatacatgcttttctagaaac
cacagtaatccacacatagtacaatctcaaagaatttcctacgagaaaca
catgggtatcatactcttctaagactagaggagaaaagcagaaaggagag
aacaaacactccacccccaaaagataaggccaaatcaatgtgtcttgatg
tcactataactcctaaaatccaatcagtatagaacaatatgttttctact
agagcaaaggagccctactacagggttcagtattccaaataactgaagca
aataaaaggcctttaaacgccttatgaaatggtagagggtcctgaactag
gtcgggataaccttagtgaacttggaaacaaccgaaaaagaattggataa
cttttcgactctagtggaatctagtcatgaataaaataatgtagtaactc
tgtaccaaattagaatccttatgtggacacctttgaagagactcg
gaattctcacctgaggaatacagaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacatcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtgaagaaagaggaacactcccccattgttggtg
ggattgcaagcttgtacaaccactttggaaatcagtctggtggttcctca
gaaaactggacattgtactaccggaggatcccgcaatacctctcctgggc
atatatccaggtgatgtcccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaaaacccagat
gcccctcaacagagaaatggatatagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggaaa
atggttggacctggagggcattatcctgagtgaggtaacccaatcacaaa
aaacttacatgatatgtactcacttataagtggatattagtccagaaact
tagaatacccaagatataaggtacaatttgcaaaacacatgaaactcaag
aagaacgaagaccaaagtgtggacatgttgccccttcttagaattgggaa
caaaacacccatggaaaggagttacagagaaaaagtttggagctcagaca
aaaggatggaccatctagagattgccatatccagggatccatcccattat
cagcctccaaacgctgaccctcattacttacactagcaagattttgctga
aggagcctgatatagctgtctctttcgagactatgctggggtctagcaaa
cacagaagtggttgctcacagtcagccattggatggatcacagagccccc
aatggaggagctagagaaagtactcaggtagctaagggatctgcacctat
agtgatcaacattatgactacagtacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_139330141_139330533
seq2: B6Ng01-141O05.g_714_1099 (reverse)

seq1  GGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGAGTTGCAGATCC  50
      | |||||||  ||| ||||||||||| | |||   || || |||||||||
seq2  GAGGTACTG--TAG-TCATAATGTTGAT-CAC---TATAGGTGCAGATCC  43

seq1  CTTTAGCTCCTTGGGTATTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGA  100
      | |||||| | || ||| |||||||||||||||||||||| || ||||||
seq2  C-TTAGCTACCTGAGTACTTTCTCTAGCTCCTCCATTGGGGGCTCTGTGA  92

seq1  TGCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCT  150
      | |||||||| |||||||||||||| ||||||||||||||||||| ||| 
seq2  TCCATCCAATGGCTGACTGTGAGCAACCACTTCTGTGTTTGCTAGACCCC  142

seq1  GGCATAGTCTCACAAGAGACAGCTATATAAGGGTCCTTTCAGCAAAATCT  200
       ||||||||||  ||||||||||||||| ||| ||| |||||||||||||
seq2  AGCATAGTCTCGAAAGAGACAGCTATATCAGGCTCC-TTCAGCAAAATCT  191

seq1  TGCTAATGTATGCAATG-GTGTCAGCATTTGGAGGCTGATTATGGGATGG  249
      ||||| |||| | |||| | |||||| ||||||||||||| |||||||||
seq2  TGCTAGTGTAAGTAATGAGGGTCAGCGTTTGGAGGCTGATAATGGGATGG  241

seq1  ATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTCATCTCAGCTCC  299
      |||||||||||||||| |||||||||||||||||||||  ||| ||||||
seq2  ATCCCTGGATATGGCAATCTCTAGATGGTCCATCCTTTTGTCTGAGCTCC  291

seq1  AAACTTTGTCTCTGTAACTCC-TTCCATGGGTGTTTTGTTCCCAATTCTA  348
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  AAACTTTTTCTCTGTAACTCCTTTCCATGGGTGTTTTGTTCCCAATTCTA  341

seq1  AGAAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAGT  393
      |||||||||||  ||||||||||||||||||||||||||||||||
seq2  AGAAGGGGCAACATGTCCACACTTTGGTCTTCGTTCTTCTTGAGT  386