BAC Information

Click to search

BAC

Clone NameB6Ng01-142C10
Chromosome2 (Build37)
Map Location 47,515,826 - 47,633,943
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142C10.bB6Ng01-142C10.g
ACCDH940420DH940421
length1,2421,040
definitionDH940420|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C10, 5' end.DH940421|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,632,673 - 47,633,943)(47,515,826 - 47,516,885)
sequence
gaattccattcatttcatacagctgagcaaaatttcattgtgtaaagaga
attgtttatacatactatggacactaagtaagaaaaagatgtcagtgggg
aaacatgtctgggaaaaatttgctctgagagcagagcaaaatctaaagac
aaaatttgaataacttttccaagttagtaacatataagtttctcatcatt
tggggaaatgacatatttagtgttgggataataaatctggaagattcatc
aggttagcccactaagaccaaggacctttggagtgttccaagtgtggaga
aataaggttgtaaaataaaaacagctctgtgtaccctttctgacaattta
cctaacggaatagcaaaggtttccagttatttattgtgatttgcttcgtt
caaaaatattcatttttatgcattttctgcatccataactttgtgttctt
ccttaaagtgttctccagttgatataaatcagatttcacaaggctaggtt
cacccttgtttggcaggcaatcattcagtctgccctgtgaagcttatttc
atgtagttccctctgatcacatggatcaacttgactcatagttggtagta
gtggggccaagaacaaagcttagacctctttattccagctctgaaactct
gttacacagcaaatttttcataggaatcactttcaagtattcttcaattg
gctcatccaactcatccagatctgatctaataaaatatgacaaggaatta
tgtcatcgataaagccagtgcttacaatctgctacatgagatggctctgg
caatatccacctttcctctgcagagactagcttcttaattactacacagc
tgaatgcctggtgcttagaaactggaatgagttcatataagcacttacat
tatcagaaaatataatagctcatttattcatggtggcattactgtgttcc
taatatagttttattgatggacacttgaactgtatcaatccccttaaatt
caaaatggttcttttgtgcatgacattatggcagagagtataatttattt
atattatctcttaaaacatgatgtttgtttcataaatgaaaaatttattg
ttggttattaaattaaactatgccactgattttggaaaaccaaaacagaa
ctggagtctaattttggagtgacgcaattgcaggcacacttacttgttta
tgaaccgctgcttatctgtcagattgcagtcaattattgctg
gaattcaggttgacaaccaagattaggtaacacagagagcatgggctagt
tgaagaaaaaagtatatccagtgtctagacccacccaaatcctgggaata
aagaggcagataagggagagcacaaactcgactctggctgtaaagaccaa
agatcaatgagcagaatgaaaaatagacagcaagatacatagaatagaca
gaattatatggctatagagtgagaatttatctcgaaggaaacaaggaaaa
aaaataggattgggccagagtcgtgctttttggaagatattattttgtca
tttttcataagaaaatagtagttatggcaagagttgctgatagtgaggaa
ggaccatatggcacctgcaaaatagccctcacccttctacactcttccta
tctttgtatgccttttttatctttgctctttgaatttagaggactttaat
gcactagtgatagtccagttacccttcttacaacatctgcattgtggaaa
cttattttagtccataaagtacaatagttaaggggtgctatttgcaagtc
tagtcctcagaaaggttagtctgcctatgttcaatgaaaatctagtaaat
caccctgagaactggacttacagaatgataacaaacacatgaccaagagg
tgtggccccagctggatactttaggaaccaacaacttccaagctgaatgg
actgctgcgagcaggtgcagtgcagctgaaggcagcctatattaatggcc
aagaggaataggaactaagatgtaaaatacattgtcaagttttaagatac
taaatttgatgcttttctttttctgtggcaaaagctaactgatgcagaat
aattggtttctagaactgaggtgctgccacaacagaaatctaaatagtgc
cattggcagtgtgctcagagcagagatgagaatggcaacaaatcttcaca
atgctagagaaatacagcaaattgttatggaggtagaaaatgtgaattga
gtgtttagagtaattattagtaacatgatgctgcacaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47632673_47633943
seq2: B6Ng01-142C10.b_44_1285 (reverse)

seq1  CAGCAATAAAATGACTGCAATCTGTACAAGTAATAGCAAGCGTGTCTCAT  50
      ||||||| || ||||||||||||| |||  ||  ||| |||| || ||||
seq2  CAGCAAT-AATTGACTGCAATCTG-ACAGATA--AGC-AGCG-GT-TCAT  43

seq1  AAACAAGATAAGTTGTGCCTTGCCAATATTGCTGCACTTCATAAATATGA  100
      ||||||| |||| |||||| |||    |||||  |||| || || ||   
seq2  AAACAAG-TAAG-TGTGCC-TGC---AATTGCGTCACTCCAAAATTA--G  85

seq1  ACTCAAG-TCTGTTTTGTGTTTTCAAGATCAGTGGCATAGTTTTATTTTA  149
      |||| || |||||||||  ||| ||| ||||||||||||| |||| ||||
seq2  ACTCCAGTTCTGTTTTGGTTTTCCAAAATCAGTGGCATAG-TTTAATTTA  134

seq1  ATTAAACACAACATATAAAATATTCATTTATGAAACAAACATCATTGTTT  199
      ||  ||| ||||| ||||| | |||||||||||||||||||||||   ||
seq2  AT--AAC-CAACA-ATAAATTTTTCATTTATGAAACAAACATCAT--GTT  178

seq1  TTAAGAGATTATATTAAATTAAATTATACTCTTCTTGCCATAATGTCATG  249
      ||||||||| ||||  || |||||||||||||   |||||||||||||||
seq2  TTAAGAGATAATAT--AAATAAATTATACTCT--CTGCCATAATGTCATG  224

seq1  CACAAAAGAACCATTTTGAATTTTAAGGGGATTGATACAGTTCAAGTGTC  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACAAAAGAACCATTTTGAA-TTTAAGGGGATTGATACAGTTCAAGTGTC  273

seq1  CATCAATAAAAACTATATTAGGAACACAGTAATGCCACCATGAATAAATG  349
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAT-AAAACTATATTAGGAACACAGTAATGCCACCATGAATAAATG  322

seq1  AGCTATTTATATTTTCTGATAATGTAAGTGCTTATATGAACTCATTCCAG  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTA-TTATATTTTCTGATAATGTAAGTGCTTATATGAACTCATTCCAG  371

seq1  TTTCTAAGCACCAGGCATTTCAGCTGTGTAGTAATTAAGAAGCTAGTCTC  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCACCAGGCA-TTCAGCTGTGTAGTAATTAAGAAGCTAGTCTC  420

seq1  TGCAGAGGAAAGGTGGATATTGCCAGAGCCATCTCATGTAGCAGATTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGAAAGGTGGATATTGCCAGAGCCATCTCATGTAGCAGATTGTA  470

seq1  AGCACTGGCTTTATCGATGACATAATTCCTTGTCATATTTTATTAGATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTTTATCGATGACATAATTCCTTGTCATATTTTATTAGATCA  520

seq1  GATCTGGATGAGTTGGATGAGCCAATTGAAGAATACTTGAAAGTGATTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGATGAGTTGGATGAGCCAATTGAAGAATACTTGAAAGTGATTCC  570

seq1  TATGAAAAATTTGCTGTGTAACAGAGTTTCAGAGCTGGAATAAAGAGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAATTTGCTGTGTAACAGAGTTTCAGAGCTGGAATAAAGAGGTC  620

seq1  TAAGCTTTGTTCTTGGCCCCACTACTACCAACTATGAGTCAAGTTGATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGTTCTTGGCCCCACTACTACCAACTATGAGTCAAGTTGATCC  670

seq1  ATGTGATCAGAGGGAACTACATGAAATAAGCTTCACAGGGCAGACTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCAGAGGGAACTACATGAAATAAGCTTCACAGGGCAGACTGAAT  720

seq1  GATTGCCTGCCAAACAAGGGTGAACCTAGCCTTGTGAAATCTGATTTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTGCCAAACAAGGGTGAACCTAGCCTTGTGAAATCTGATTTATA  770

seq1  TCAACTGGAGAACACTTTAAGGAAGAACACAAAGTTATGGATGCAGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGAGAACACTTTAAGGAAGAACACAAAGTTATGGATGCAGAAAA  820

seq1  TGCATAAAAATGAATATTTTTGAACGAAGCAAATCACAATAAATAACTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAAATGAATATTTTTGAACGAAGCAAATCACAATAAATAACTGG  870

seq1  AAACCTTTGCTATTCCGTTAGGTAAATTGTCAGAAAGGGTACACAGAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTGCTATTCCGTTAGGTAAATTGTCAGAAAGGGTACACAGAGCT  920

seq1  GTTTTTATTTTACAACCTTATTTCTCCACACTTGGAACACTCCAAAGGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTTTACAACCTTATTTCTCCACACTTGGAACACTCCAAAGGTC  970

seq1  CTTGGTCTTAGTGGGCTAACCTGATGAATCTTCCAGATTTATTATCCCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTAGTGGGCTAACCTGATGAATCTTCCAGATTTATTATCCCAA  1020

seq1  CACTAAATATGTCATTTCCCCAAATGATGAGAAACTTATATGTTACTAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATATGTCATTTCCCCAAATGATGAGAAACTTATATGTTACTAAC  1070

seq1  TTGGAAAAGTTATTCAAATTTTGTCTTTAGATTTTGCTCTGCTCTCAGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGTTATTCAAATTTTGTCTTTAGATTTTGCTCTGCTCTCAGAG  1120

seq1  CAAATTTTTCCCAGACATGTTTCCCCACTGACATCTTTTTCTTACTTAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTCCCAGACATGTTTCCCCACTGACATCTTTTTCTTACTTAGT  1170

seq1  GTCCATAGTATGTATAAACAATTCTCTTTACACAATGAAATTTTGCTCAG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAGTATGTATAAACAATTCTCTTTACACAATGAAATTTTGCTCAG  1220

seq1  CTGTATGAAATGAATGGAATTC  1271
      ||||||||||||||||||||||
seq2  CTGTATGAAATGAATGGAATTC  1242

seq1: chr2_47515826_47516885
seq2: B6Ng01-142C10.g_69_1108

seq1  GAATTCAGGTTGACAACCAAGATTAGGTAACACAGAGAGCATGGGCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGACAACCAAGATTAGGTAACACAGAGAGCATGGGCTAGT  50

seq1  TGAAGAAAAAAGTATATCCAGTGTCTAGACCCACCCAAATCCTGGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAAAGTATATCCAGTGTCTAGACCCACCCAAATCCTGGGAATA  100

seq1  AAGAGGCAGATAAGGGAGAGCACAAACTCGACTCTGGCTGTAAAGACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAGATAAGGGAGAGCACAAACTCGACTCTGGCTGTAAAGACCAA  150

seq1  AGATCAATGAGCAGAATGAAAAATAGACAGCAAGATACATAGAATAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATGAGCAGAATGAAAAATAGACAGCAAGATACATAGAATAGACA  200

seq1  GAATTATATGGCTATAGAGTGAGAATTTATCTCGAAGGAAACAAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATGGCTATAGAGTGAGAATTTATCTCGAAGGAAACAAGGAAAA  250

seq1  AAAATAGGATTGGGCCAGAGTCGTGCTTTTTGGAAGATATTATTTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGATTGGGCCAGAGTCGTGCTTTTTGGAAGATATTATTTTGTCA  300

seq1  TTTTTCATAAGAAAATAGTAGTTATGGCAAGAGTTGCTGATAGTGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAAGAAAATAGTAGTTATGGCAAGAGTTGCTGATAGTGAGGAA  350

seq1  GGACCATATGGCACCTGCAAAATAGCCCTCACCCTTCTACACTCTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATATGGCACCTGCAAAATAGCCCTCACCCTTCTACACTCTTCCTA  400

seq1  TCTTTGTATGCCTTTTTTATCTTTGCTCTTTGAATTTAGAGGACTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATGCCTTTTTTATCTTTGCTCTTTGAATTTAGAGGACTTTAAT  450

seq1  GCACTAGTGATAGTCCAGTTACCCTTCTTACAACATCTGCATTGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGTGATAGTCCAGTTACCCTTCTTACAACATCTGCATTGTGGAAA  500

seq1  CTTATTTTAGTCCATAAAGTACAATAGTTAAGGGGTGCTATTTGCAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTAGTCCATAAAGTACAATAGTTAAGGGGTGCTATTTGCAAGTC  550

seq1  TAGTCCTCAGAAAGGTTAGTCTGCCTATGTTCAATGAAAATCTAGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCAGAAAGGTTAGTCTGCCTATGTTCAATGAAAATCTAGTAAAT  600

seq1  CACCCTGAGAACTGGACTTACAGAATGATAACAAACACATGACCAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAGAACTGGACTTACAGAATGATAACAAACACATGACCAAGAGG  650

seq1  TGTGGCCCCAGCTGGATACTTTAGGAACCAACAACTTCCAAGCTGAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCCAGCTGGATACTTTAGGAACCAACAACTTCCAAGCTGAATGG  700

seq1  ACTGCTGCGAGCAGGTGCAGTGCAGCTGAAGGCAGCCTATATTAATGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCGAGCAGGTGCAGTGCAGCTGAAGGCAGCCTATATTAATGGCC  750

seq1  AAGAGGAATAGGAACTAAGATGTAAAATACATTGTCAAGTTTTAAGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATAGGAACTAAGATGTAAAATACATTGTCAAGTTTTAAGATAC  800

seq1  TAAATTTGATGCTTTTCTTTTTCTGTGGCAAAAGCTAACTGATGCAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAATTTGATGCTTTTCTTTTTCTGTGGCAAAAGCTAACTGATGCAG-AA  849

seq1  TAATTGGTTTCTAGAACTGAGGTGCTGCCACAACAGAAATCTAAAATAAG  900
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  TAATTGGTTTCTAGAACTGAGGTGCTGCCACAACAGAAATCTAAA--TAG  897

seq1  TGCCATTGGCAGTGTGCTCAGAGCAGAGAATGAGAAATGGCAAACAAAAT  950
      |||||||||||||||||||||||||||| ||||| ||||||||   ||||
seq2  TGCCATTGGCAGTGTGCTCAGAGCAGAG-ATGAG-AATGGCAA--CAAAT  943

seq1  CTTCACAAATGCTAGGAGAAAATACAGCAAATTGTTATTGGAGGTTAGAA  1000
      |||||| ||||||| ||| |||||||||||||||||| |||||| |||||
seq2  CTTCAC-AATGCTA-GAG-AAATACAGCAAATTGTTA-TGGAGG-TAGAA  988

seq1  AAATGGTGATATGAGTGTTTTAGAGTAAAATAATTAGTAAACATGATGCC  1050
      ||   ||||  |||||| ||||||||  ||| |||||| ||||||||| |
seq2  AA--TGTGAATTGAGTG-TTTAGAGT--AATTATTAGT-AACATGATG-C  1031

seq1  TGCAACAATA  1060
      ||| ||||||
seq2  TGC-ACAATA  1040