BAC Information

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BAC

Clone NameB6Ng01-142F17
Chromosome2 (Build37)
Map Location 11,163,027 - 11,283,323
singlet/doubletdoublet
Overlap genePrkcq, LOC100040733
Upstream geneItih5, Sfmbt2, LOC100040690, LOC100040703, LOC667192
Downstream geneLOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F17.bB6Ng01-142F17.g
ACCDH940574DH940575
length1,16785
definitionDH940574|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F17, 5' end.DH940575|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,163,027 - 11,164,215)(11,283,239 - 11,283,323)
sequence
gaattctcctcggggttctgtaagaatgctcaacacagaaatttcctcag
agatgttcagaaaacatcaatgtttgattaactgaaaagaagtcagttaa
agaaaagattgaattaaataattgatctagacctgtttatacaaaagaca
tggccaaataaatcacttcagaagtaagcacagaaaagccaacagaattc
aagaaagtctatgttctgacataagtattccctggggtgactgaaaagtt
gagaggctaaaggcaggcaggggatggagcaaggaaaagttcatttctgg
aatatgctaatgttttttaagtttttctataatctaatgtatgcaaggtt
ataatcatagatatgtaaatgatataggtatagacttagatgacaggggt
gtatatatgtatttataataataagtttagggttctagaatatacatttt
tattccacaaattgcatgtatacttttgttcattccatttcattgcatct
gaactaaagcagaaatgtctggttttattaagaattgacatatgtgggtc
acaatttatagatttatctgtatagttatcccatacattgagggagaaaa
tgattaacttgatgacagtctttcacccacactcaccaagtgtttatccc
catcataattccaaataaaataatcggactactctatcctgaaagtagtg
ggcaaagcatcctggcccatctggggaattataagaaaagtattgggaat
accctgcacccaggagcttgagatttcttcagaattgtcttagtcagggt
ttctattcctgcacaaacatcatgaccaagaagcacttgggggaggaaag
gatttattcggcttacacttccatactgctgttcatcacaaaggatgtag
gactggaactcaagcaggtcagaagcaggagctgatgcagaggccatgga
ggatgttctttactgcttgcttcccctggctgctcagctgctctcttata
gaccaagactacacccaaagatgtcccacccacaaggggcctttccctga
tcactattgagaaatgcctaagttggttcctatggaggcatttcctcact
gaggttcttttccttggatactcagctggtcagttgaaccaaacctaggc
tagtacaatgacccctt
attttttaaaatggctcaaaatgaggcctataaaccatcataggctaatc
agatgaaatggggtgtgggttattgggggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11163027_11164215
seq2: B6Ng01-142F17.b_45_1211

seq1  GAATTCTCCTCGGGGTTCTGTAAGAATGCTCAACACAGAAATTTCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCGGGGTTCTGTAAGAATGCTCAACACAGAAATTTCCTCAG  50

seq1  AGATGTTCAGAAAACATCAATGTTTGATTAACTGAAAAGAAGTCAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCAGAAAACATCAATGTTTGATTAACTGAAAAGAAGTCAGTTAA  100

seq1  AGAAAAGATTGAATTAAATAATTGATCTAGACCTGTTTATACAAAAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATTGAATTAAATAATTGATCTAGACCTGTTTATACAAAAGACA  150

seq1  TGGCCAAATAAATCACTTCAGAAGTAAGCACAGAAAAGCCAACAGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAATAAATCACTTCAGAAGTAAGCACAGAAAAGCCAACAGAATTC  200

seq1  AAGAAAGTCTATGTTCTGACATAAGTATTCCCTGGGGTGACTGAAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCTATGTTCTGACATAAGTATTCCCTGGGGTGACTGAAAAGTT  250

seq1  GAGAGGCTAAAGGCAGGCAGGGGATGGAGCAAGGAAAAGTTCATTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTAAAGGCAGGCAGGGGATGGAGCAAGGAAAAGTTCATTTCTGG  300

seq1  AATATGCTAATGTTTTTTAAGTTTTTCTATAATCTAATGTATGCAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTAATGTTTTTTAAGTTTTTCTATAATCTAATGTATGCAAGGTT  350

seq1  ATAATCATAGATATGTAAATGATATAGGTATAGACTTAGATGACAGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATAGATATGTAAATGATATAGGTATAGACTTAGATGACAGGGGT  400

seq1  GTATATATGTATTTATAATAATAAGTTTAGGGTTCTAGAATATACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGTATTTATAATAATAAGTTTAGGGTTCTAGAATATACATTTT  450

seq1  TATTCCACAAATTGCATGTATACTTTTGTTCATTCCATTTCATTGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACAAATTGCATGTATACTTTTGTTCATTCCATTTCATTGCATCT  500

seq1  GAACTAAAGCAGAAATGTCTGGTTTTATTAAGAATTGACATATGTGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAGCAGAAATGTCTGGTTTTATTAAGAATTGACATATGTGGGTC  550

seq1  ACAATTTATAGATTTATCTGTATAGTTATCCCATACATTGAGGGAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTATAGATTTATCTGTATAGTTATCCCATACATTGAGGGAGAAAA  600

seq1  TGATTAACTTGATGACAGTCTTTCACCCACACTCACCAAGTGTTTATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACTTGATGACAGTCTTTCACCCACACTCACCAAGTGTTTATCCC  650

seq1  CATCATAATTCCAAATAAAATAATCGGACTACTCTATCCTGAAAGTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAATTCCAAATAAAATAATCGGACTACTCTATCCTGAAAGTAGTG  700

seq1  GGCAAAGCATCCTGGCCCATCTGGGGAATTATAAGAAAAGTATTGGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCATCCTGGCCCATCTGGGGAATTATAAGAAAAGTATTGGGAAT  750

seq1  ACCCTGCACCCAGGAGCTTGAGATTTCTTCAGAATTGTCTTAGTCAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCACCCAGGAGCTTGAGATTTCTTCAGAATTGTCTTAGTCAGGGT  800

seq1  TTCTATTCCTGCACAAACATCATGACCAAGAAGCACTT-GGGGAGGAAAG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTATTCCTGCACAAACATCATGACCAAGAAGCACTTGGGGGAGGAAAG  850

seq1  GATTTATTCGGCTTACACTTCCATACTGCTGTTCATCACCAAAGGATGTA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATTTATTCGGCTTACACTTCCATACTGCTGTTCATCA-CAAAGGATGTA  899

seq1  GGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATG  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGACTGGAACTCAAGCAGGTCAG-AAGCAGGAGCTGATGCAGAGGCCATG  948

seq1  GAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCT  999
      || |||||||||||||| |||||||||||||||| ||||||| |||||||
seq2  GA-GGATGTTCTTTACT-GCTTGCTTCCCCTGGC-TGCTCAG-CTGCTCT  994

seq1  CTTATAGAACCAAGACTACCAACCCAGAGATGGTCCCACCCACAAGGGGC  1049
      ||||||| |||||||||||  ||||| |||| ||||||||||||||||||
seq2  CTTATAG-ACCAAGACTAC--ACCCAAAGAT-GTCCCACCCACAAGGGGC  1040

seq1  CTTTTCCCCTTGATCACTAATTGAGAAAATGCCTTAAAGTTGGTTCTCAT  1099
      ||||   || |||||||| |||||| ||||||||  ||||||||||  ||
seq2  CTTT---CCCTGATCACT-ATTGAG-AAATGCCT--AAGTTGGTTCCTAT  1083

seq1  GGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGT  1149
      |||||||||||||| ||||| | || |||| ||  ||| ||| |||||| 
seq2  GGAGGCATTTCCTC-ACTGAGGTTCTTTTC-CTTGGAT-ACT-CAGCTG-  1128

seq1  GTCAAGTTGACACAAAACTA-GCTAGTACAATTGACCCCTT  1189
      ||| ||||||  |||| ||| |||||||||| |||||||||
seq2  GTC-AGTTGAACCAAACCTAGGCTAGTACAA-TGACCCCTT  1167

seq1: chr2_11283239_11283323
seq2: B6Ng01-142F17.g_72_156 (reverse)

seq1  CCTCCTCCCCCAATAACCCACACCCCATTTCATCTGATTAGCCTATGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCCCAATAACCCACACCCCATTTCATCTGATTAGCCTATGATG  50

seq1  GTTTATAGGCCTCATTTTGAGCCATTTTAAAAAAT  85
      |||||||||||||||||||||||||||||||||||
seq2  GTTTATAGGCCTCATTTTGAGCCATTTTAAAAAAT  85