BAC Information

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BAC

Clone NameB6Ng01-142K03
Chromosome2 (Build37)
Map Location 98,988,258 - 99,046,534
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K03.bB6Ng01-142K03.g
ACCDH940777DH940778
length1,1411,112
definitionDH940777|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K03, 5' end.DH940778|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,988,258 - 98,989,401)(99,045,398 - 99,046,534)
sequence
gaattcctaaaatgatttataaggagtcagaatttcatatttcaaacttg
taccagtcatgtttcataggcttcattgaaaatatcatcttcaactttaa
agttatgtgacagaataaatacaaaagctacttctaatactagaataatt
gagtaaacagagactacgatgatgatctttggagcatttacttgttagtt
ttctatatttttaaatgcctaattccattaaaatggaaaatgatagggta
aagtgaaatatacatgcaaggtgaaaattagcaattgtgttttttacttg
aatggataaaggtcataagcaacacaggagccatgagtatgtatacaggt
gagtgatttcttaaaaggtttaaatgactagtaattaacatcagaacatt
ttagtgggagaagagtttgagtttttagaactgctcaatctgtagacata
gggaattcatgtttacagagaaatgtgaacaaacatagatttggtaagca
taaaaagaaaagcaaaaccttaaaaatttagtgtttagaaataaggttat
tataaattatattaatcaaaattatatgtaagttgtgtatattactatga
ttcatataagaaaattatctccagtatttaatcactggcacatcaatctg
ttcatacatgagattttatgagttatctactttttctacttattaattta
caattttgctctttacttcttgagctataaatatacttcaagctataaga
gaaaatcaaaattatataactaatatccagatttataaaagcatctcttt
ttcatgatattttactgaaatttcaaaacaatgtttgtagaatagtgtat
gttaaaaagtacatttgtatagaaacatgtagggatggtagagtatgcct
agagtttagacagacatgtacatgactaaaaataagtcaaatgctagaaa
ggcagaatttattgcctggatgtacctggggattttacatcacaccacct
aatttcaaaatatagtttagcagtgaaacagaataaaattatggagctga
aaatgtggcaaggatttagcttttccttcacaagttaacattgtaaaaat
tcataaggaatctagtcatgttcagaaagctctattctgca
gaattctatgtagatttactaaggtttggagtctttgtggctgaaacaca
tttctgaaggggaaaaaaatcaatattaaactacatttgatatatttctt
tgctaaaagccacaactttcagaattctagaaagggatgatttatagcta
ttacatcctacaaaatgttctttttggccctgaaatctgataatttggtt
ttacatggtgactctgcttccagaaataaaactcctgtccatcaccatta
ttagtatcaaggagaggttgtgaagtgctatggaaagcacagcacatttc
tctgcctcactcctgtgataattgcaaaattttggaaatgtattagctgc
agcagaagaggaatgaagatcttaaagcggtgttaggtataaacgagcat
ggaaccttggctttctatttggggagcacttacttctcttggcatactct
gtataatatattcccgcttggccttgctgatgcatttttaaatttatcag
cctggaaacattttcactgggttacaaatgttttatcagcccgcctttct
cactggaccagaatatgatgcagattgtaagtgaaagctggagaagggga
gcacagtacacattatattttttatttatttattttttttcttaaggaag
agcagtctctttagatagtcttgatcatgtagaagttaatagatgcctgc
aggcagtggatgtattcttatttacagagcttatttactctttattttat
tttagtccttaacaggaactatcaacaaattagaagtggctagaaaataa
ggataatgataatcctatttatagtgtaatagtagacatgctgaaccact
tgatgacaacttgtgccttccaagagaaaaaataataatttcataaccaa
acaataattgcccatacatacttttaatagcatgaaatatgtcaattcat
atatcagtatgatacttactctttaaataatgcagtaataatgtcataac
actacctattcacacagaaagatgtcatatttgagaaagagtatgggaac
aactgacatgtaggagcaatgcaagaatatacagttattactgactaatt
ttggatgataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_98988258_98989401
seq2: B6Ng01-142K03.b_50_1190

seq1  GAATTCCTAAAATGATTTATAAGGAGTCAGAATTTCATATTTCAAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAATGATTTATAAGGAGTCAGAATTTCATATTTCAAACTTG  50

seq1  TACCAGTCATGTTTCATAGGCTTCATTGAAAATATCATCTTCAACTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCATGTTTCATAGGCTTCATTGAAAATATCATCTTCAACTTTAA  100

seq1  AGTTATGTGACAGAATAAATACAAAAGCTACTTCTAATACTAGAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTGACAGAATAAATACAAAAGCTACTTCTAATACTAGAATAATT  150

seq1  GAGTAAACAGAGACTACGATGATGATCTTTGGAGCATTTACTTGTTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAACAGAGACTACGATGATGATCTTTGGAGCATTTACTTGTTAGTT  200

seq1  TTCTATATTTTTAAATGCCTAATTCCATTAAAATGGAAAATGATAGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATTTTTAAATGCCTAATTCCATTAAAATGGAAAATGATAGGGTA  250

seq1  AAGTGAAATATACATGCAAGGTGAAAATTAGCAATTGTGTTTTTTACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATATACATGCAAGGTGAAAATTAGCAATTGTGTTTTTTACTTG  300

seq1  AATGGATAAAGGTCATAAGCAACACAGGAGCCATGAGTATGTATACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAAGGTCATAAGCAACACAGGAGCCATGAGTATGTATACAGGT  350

seq1  GAGTGATTTCTTAAAAGGTTTAAATGACTAGTAATTAACATCAGAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTTCTTAAAAGGTTTAAATGACTAGTAATTAACATCAGAACATT  400

seq1  TTAGTGGGAGAAGAGTTTGAGTTTTTAGAACTGCTCAATCTGTAGACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGGAGAAGAGTTTGAGTTTTTAGAACTGCTCAATCTGTAGACATA  450

seq1  GGGAATTCATGTTTACAGAGAAATGTGAACAAACATAGATTTGGTAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCATGTTTACAGAGAAATGTGAACAAACATAGATTTGGTAAGCA  500

seq1  TAAAAAGAAAAGCAAAACCTTAAAAATTTAGTGTTTAGAAATAAGGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAAGCAAAACCTTAAAAATTTAGTGTTTAGAAATAAGGTTAT  550

seq1  TATAAATTATATTAATCAAAATTATATGTAAGTTGTGTATATTACTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTATATTAATCAAAATTATATGTAAGTTGTGTATATTACTATGA  600

seq1  TTCATATAAGAAAATTATCTCCAGTATTTAATCACTGGCACATCAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAAGAAAATTATCTCCAGTATTTAATCACTGGCACATCAATCTG  650

seq1  TTCATACATGAGATTTTATGAGTTATCTACTTTTTCTACTTATTAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACATGAGATTTTATGAGTTATCTACTTTTTCTACTTATTAATTTA  700

seq1  CAATTTTGCTCTTTACTTCTTGAGCTATAAATATACTTCAAGCTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCTCTTTACTTCTTGAGCTATAAATATACTTCAAGCTATAAGA  750

seq1  GAAAATCAAAATTATATAACTAATATCCAGATTTATAAAAGCATCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAAAATTATATAACTAATATCCAGATTTATAAAAGCATCTCTTT  800

seq1  TTCATGATATTTTACTGAAATTTCAAAACAATGTTTGTAGAATAGTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATATTTTACTGAAATTTCAAAACAATGTTTGTAGAATAGTGTAT  850

seq1  GTTAAAAAGTACATTTGTATAGAAACATGTAGGGATGGTAGAGTATGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAGTACATTTGTATAGAAACATGTAGGGATGGTAGAGTATGCCT  900

seq1  AGAGTTTAGACAGACATGTACATGACTAAAAATAAGTCAAATGCTAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTAGACAGACATGTACATGACTAAAAATAAGTCAAATGCTAGAAA  950

seq1  GGCAGAATTTATTGCCTGGATGTACCTGGGGATTTTACATCACA-CACCT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCAGAATTTATTGCCTGGATGTACCTGGGGATTTTACATCACACCACCT  1000

seq1  AATTTCAAAATATAGTTTAGCAGTGAAACAG-ATAACATTAT-GAGCTGA  1047
      ||||||||||||||||||||||||||||||| |||| ||||| |||||||
seq2  AATTTCAAAATATAGTTTAGCAGTGAAACAGAATAAAATTATGGAGCTGA  1050

seq1  ACAATGT-GCAGGGATTTAGGCTTTTCTCTCACAAG-TAACATTTGTAAA  1095
      | ||||| ||| ||||||| |||||||  ||||||| ||||| |||||||
seq2  A-AATGTGGCAAGGATTTA-GCTTTTCCTTCACAAGTTAACA-TTGTAAA  1097

seq1  AATATTCATTAGGAAATCTAGTCATGTTCACAGAAAGCTCAATTCTGCA  1144
      |  |||||| ||| ||||||||||||||  |||||||||| ||||||||
seq2  A--ATTCATAAGG-AATCTAGTCATGTT--CAGAAAGCTCTATTCTGCA  1141

seq1: chr2_99045398_99046534
seq2: B6Ng01-142K03.g_68_1179 (reverse)

seq1  GTTATCATCAATAATTTAGTCATGTAATAAACTGTATATTCTTGCATTTG  50
      ||||||||| | || ||||||| ||||| ||||||||||||||||| |||
seq2  GTTATCATCCA-AAATTAGTCA-GTAAT-AACTGTATATTCTTGCA-TTG  46

seq1  CTTCTTACATTGTCAGGTTTGTTCCCATACTCTGTCTCCAAATTATGACT  100
      | || |||| ||||||  ||||||||||||||| ||||  || |||||| 
seq2  C-TCCTACA-TGTCAG--TTGTTCCCATACTCTTTCTC--AAATATGAC-  89

seq1  ATTCTCTCTGTGTGAAATAGGGTAGGTGTTATGACATTATTACCTGCATT  150
        ||| |||||||| |||| |||| ||||||||||||||||| ||||| |
seq2  -ATCTTTCTGTGTG-AATA-GGTA-GTGTTATGACATTATTA-CTGCA-T  133

seq1  TATTTTAAAAGAGGTAAGTATCAATTACTGATAATATGAATTGAACATAT  200
      |||||  ||||| ||||||||||  ||||||| |||||||||| ||||||
seq2  TATTT--AAAGA-GTAAGTATCA--TACTGAT-ATATGAATTG-ACATAT  176

seq1  TTCATGCTATTAAAAGTATTGTATGGGCAATTATTGTTTGGTTATGAAAT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCATGCTATTAAAAGTA-TGTATGGGCAATTATTGTTTGGTTATGAAAT  225

seq1  TATTATTTTTTCTCTTGGAAGGCACAAGTTGTCATCAAGTGGTTCAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTTCTCTTGGAAGGCACAAGTTGTCATCAAGTGGTTCAGCAT  275

seq1  GTCTACTATTACACTATAAATAGGATTATCATTATCCTTATTTTCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTATTACACTATAAATAGGATTATCATTATCCTTATTTTCTAGCC  325

seq1  ACTTCTAATTTGTTGATAGTTCCTGTTAAGGACTAAAATAAAATAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAATTTGTTGATAGTTCCTGTTAAGGACTAAAATAAAATAAAGAG  375

seq1  TAAATAAGCTCTGTAAATAAGAATACATCCACTGCCTGCAGGCATCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGCTCTGTAAATAAGAATACATCCACTGCCTGCAGGCATCTATT  425

seq1  AACTTCTACATGATCAAGACTATCTAAAGAGACTGCTCTTCCTTAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACATGATCAAGACTATCTAAAGAGACTGCTCTTCCTTAAGAAA  475

seq1  AAAAATAAATAAATAAAAAATATAATGTGTACTGTGCTCCCCTTCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAAAAATATAATGTGTACTGTGCTCCCCTTCTCCAG  525

seq1  CTTTCACTTACAATCTGCATCATATTCTGGTCCAGTGAGAAAGGCGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTTACAATCTGCATCATATTCTGGTCCAGTGAGAAAGGCGGGCT  575

seq1  GATAAAACATTTGTAACCCAGTGAAAATGTTTCCAGGCTGATAAATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACATTTGTAACCCAGTGAAAATGTTTCCAGGCTGATAAATTTAA  625

seq1  AAATGCATCAGCAAGGCCAAGCGGGAATATATTATACAGAGTATGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCAGCAAGGCCAAGCGGGAATATATTATACAGAGTATGCCAAG  675

seq1  AGAAGTAAGTGCTCCCCAAATAGAAAGCCAAGGTTCCATGCTCGTTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGTGCTCCCCAAATAGAAAGCCAAGGTTCCATGCTCGTTTATA  725

seq1  CCTAACACCGCTTTAAGATCTTCATTCCTCTTCTGCTGCAGCTAATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACCGCTTTAAGATCTTCATTCCTCTTCTGCTGCAGCTAATACAT  775

seq1  TTCCAAAATTTTGCAATTATCACAGGAGTGAGGCAGAGAAATGTGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATTTTGCAATTATCACAGGAGTGAGGCAGAGAAATGTGCTGTG  825

seq1  CTTTCCATAGCACTTCACAACCTCTCCTTGATACTAATAATGGTGATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATAGCACTTCACAACCTCTCCTTGATACTAATAATGGTGATGGA  875

seq1  CAGGAGTTTTATTTCTGGAAGCAGAGTCACCATGTAAAACCAAATTATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTTATTTCTGGAAGCAGAGTCACCATGTAAAACCAAATTATCA  925

seq1  GATTTCAGGGCCAAAAAGAACATTTTGTAGGATGTAATAGCTATAAATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGGGCCAAAAAGAACATTTTGTAGGATGTAATAGCTATAAATCA  975

seq1  TCCCTTTCTAGAATTCTGAAAGTTGTGGCTTTTAGCAAAGAAATATATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTAGAATTCTGAAAGTTGTGGCTTTTAGCAAAGAAATATATCA  1025

seq1  AATGTAGTTTAATATTGATTTTTTTCCCCTTCAGAAATGTGTTTCAGCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTTTAATATTGATTTTTTTCCCCTTCAGAAATGTGTTTCAGCCA  1075

seq1  CAAAGACTCCAAACCTTAGTAAATCTACATAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCCAAACCTTAGTAAATCTACATAGAATTC  1112